REL RCSB RCSB RCSB 2012-04-30 2012-08-22 2012-08-22 2012-10-24 Structure of AAV-DJ, a Retargeted Gene Therapy Vector: Cryo-Electron Microscopy at 4.5A resolution Lerch TF O'Donnell JK Meyer NL Xie Q Taylor KA Stagg SC Chapman MS Gene therapy, adeno-associated virus, vector, cryo-electron microscopy, directed evolution, AAV Lerch TF O'Donnell JK Meyer NL Xie Q Taylor KA Stagg SM Chapman MS Structure of AAV-DJ, a Retargeted Gene Therapy Vector: Cryo-Electron Microscopy at 4.5A Resolution STRUCTURE 20 1310 1320 2012 22727812 doi:10.1016/j.str.2012.05.004 3j1q FULLOVERLAP AAV-DJ AAV-DJ 60 viral subunits form the icosahedral capsid 1 3.75 Adeno-associated virus Adeno-associated virus Homo sapiens VERTEBRATES 3.75 VP3 250 1 VIRUS-LIKE PARTICLE SEROTYPE false true singleParticle particle 1.5 7.5
125mM NaCl, 10mM Tris, 1mM MgCl2, pH 7.5
C-flat grid CF-2/1-2C (2um hole, 1 um spacing, 200 mesh copper), glow discharged
 ETHANE FEI VITROBOT MARK I FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 FEI TITAN KRIOS AUTOGRID HOLDER 2011-02-25 4773
Images were collected automatically using Leginon software. Particles were manually selected for single particle reconstruction.
CTF was estimated using Appion software
 4.5 FSC 0.143 CUT-OFF FREALIGN 27312 emd_5415.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 -180 -180 -180 360 360 360 475.81198 475.81198 475.81198 90.0 90.0 90.0 X Y Z -0.1243183 0.17182954 -0.02058947 0.01350072 1.3217 1.3217 1.3217 0.035 AUTHOR Reconstruction of AAV-DJ, a re-targeted gene therapy vector
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 1LP3 A FLEXIBLE FIT RSRef, CNS
Protocol: Refinement of reconstruction magnification relative to homolog crystal structure, manual rebuilding, simulated annealing torsion angle dynamics, isotropic B-factors. Iterative refinement in RSRef and model building in Coot
Correlation coefficient REAL 30.0