2026-06-24 REL PDBe INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY PDBe PDBe 2025-06-23 2026-06-24 2026-06-24 2026-06-24 European Research Council (ERC) 101043452 European Union Ministry of Education, Youth and Sports of the Czech Republic LX22NPO5103 Czech Republic Ministry of Education, Youth and Sports of the Czech Republic CZ.02.01.01/00/22_008/0004607 Czech Republic European Research Council (ERC) 1233487 European Union Bacteriophage 812 prohead II with minor capsid proteins with partial occupancy Zlatohurska M Prochazkova M Cienikova Z Fuzik T Plevka P Bacterophage, phage cycle, capsid assembly, single particle analysis, the HK97 fold, Herelleviridae, VIRUS Zlatohurska M Plevka P Asymmetric unit of bacteriophage 812 prohead II with minor capsid proteins with partial occupancy To be published 0353 9roz FULLOVERLAP EMDB EMD-54135 associated EM volume
Asymmetric unit of bacteriophage 812 prehead with minor capsid proteins with partial occupancy
 Staphylococcus phage 812K1/420 Staphylococcus phage 812K1/420 0 1 2 3
Single particle analysis of capsid-like structures from the infected S. aureus cells
Staphylococcus phage 812K1/420 Staphylococcus aureus 1137 capsid 1040.0 16 VIRION STRAIN false true The asymmetric unit of bacteriophage 812 prohead II with minor capsid proteins with partial occupancy 1 1 2 3 Staphylococcus phage 812K1/420 Putative Ig-like protein Staphylococcus phage 812K1/420 0.019624799 5 LEVO AKKNVNDVLQQESVTVADKYLQVKVNRDGYTRTHEGQYAYKVVSEGEELFLYPVQTDGKGTLNVMKKSPIAYTDGDNIHF VVNTVVDPYNHSFIRTEDIKGLDKGKQLIQAFLAFVEDRFKFGVYNVFVANNKEDVLSIVDPTDNDADEVKDSLEHAHED VIADFPASPARKDV A0A0U1UYD0 Major capsid protein Staphylococcus phage 812K1/420 0.048446559 16 LEVO SFQTGYGITPDTQIDAGALRREILDDQITMLTWTNEDLIFYRDISRRPAQSTVVKYDQYLRHGNVGHSRFVKEIGVAPVS DPNIRQKTVSMKYVSDTKNMSIASGLVNNIADPSQILTEDAIAVVAKTIEWASFYGDASLTSEVEGEGLEFDGLAKLIDK NNVINAKGNQLTEKHLNEAAVRIGKGFGTATDAYMPIGVHADFVNSILGRQMQLMQDNSGNVNTGYSVNGFYSSRGFIKL HGSTVMENELILDESLQPLPNAPQPAKVTATVETKQKGAFENEEDRAGLSYKVVVNSDDAQSAPSEEVTATVSNVDDGVK LSINVNAMYQQQPQFVSIYRQGKETGMYFLIKRVPVKDAQEDGTIVFVDKNETLPETADVFVGEMSPQVVHLFELLPMMK LPLAQINASITFAVLWYGALALRAPKKWARIKNVRYIAV A1YTN4 Virion component Staphylococcus phage 812K1/420 0.007896915 1 LEVO SKHIEITMSSGAKYFLVSTDEKSYNRQDIDYMLRGMDETSIKVYTESAITSPQVYINPNRIESFKIVF A0A0U1WYT8 singleParticle particle 7.5 10.0 NaCl sodium chloride 10.0 CaCl2 calcium chloride 50.0 Tris-HCl Tris(hydroxymethyl)aminomethane hydrochloride
Phage buffer, adjusted by Tris-HCl (pH 8) to a final pH of approx. 7.5
 Quantifoil R2/1 GOLD 300 GRAPHENE HOLEY PLASMA CLEANING OTHER ETHANE 100 283.15 FEI VITROBOT MARK IV
One-side blotting.
TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 0.8 2.8000000000000003 81000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN FEI FALCON III (4k x 4k) COUNTING 1 21755 40.0 1 68779 PHASE FLIPPING AND AMPLITUDE CORRECTION EMD-8304 1 3.2 FSC 0.143 CUT-OFF RELION 5.0beta 8100 MAXIMUM LIKELIHOOD RELION 5.0beta MAXIMUM LIKELIHOOD RELION 5.0beta 3 RELION 5.0beta emd_54135.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 1000 1000 1000 0 0 0 1000 1000 1000 1283.5 1283.5 1283.5 90.0 90.0 90.0 X Y Z -0.035419133 0.06524326 0.00012476686 0.0023772002 1.2835 1.2835 1.2835 0.01 AUTHOR The I4 reconstruction of the phage 812 prehead with minor capsid proteins with partial occupancy was computed using RELION 5. This file is the unmasked output of the post-processing. 5LII PDB experimental model AB INITIO MODEL REAL emd_54135_msk_1.map emd_54135_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 1000 1000 1000 0 0 0 1000 1000 1000 1283.5 1283.5 1283.5 90.0 90.0 90.0 X Y Z -0.0138168605 0.028622344 -0.00004249517 0.0016958003 1.2835 1.2835 1.2835 AUTHOR Half map was calculated in RELION with the Ewald sphere curvature correction. emd_54135_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 1000 1000 1000 0 0 0 1000 1000 1000 1283.5 1283.5 1283.5 90.0 90.0 90.0 X Y Z -0.014534569 0.028314209 -0.00004432258 0.0016764702 1.2835 1.2835 1.2835 AUTHOR Half map was calculated in RELION with the Ewald sphere curvature correction.