2026-05-13 REL PDBe INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY DATABASE_REFERENCES citation citation_author em_admin _em_admin.last_update EXPERIMENTAL_SUMMARY citation citation_author em_admin _em_admin.last_update PDBe PDBe 2025-05-14 2025-12-17 2025-12-17 2026-05-13 Medical Research Council (MRC, United Kingdom) United Kingdom Human Adenovirus D 10 Capsid Structure Waraich K Mundy RM Bates EA da Fonseca P Morris E Rizkallah PJ Baker AT Young MT Parker AL Bhella D virus, adenovirus, capsid, conjunctivitis Mundy RM Waraich K Bates EA Rizkallah PJ Baker AT Young MT Morris E da Fonseca PCA Bliss CM Matthews D Bhella D Parker AL Identification of a novel fiber shaft structural motif and overexpression of key transcripts elucidated in human adenovirus D 10. Plos Pathog. US 22 e1014182 e1014182 2026 42048387 doi:10.1371/journal.ppat.1014182 1553-7374 Mundy RM Waraich K Bates EA Rizkallah PJ Baker AT Young MT Morris E da Fonseca PCA Bliss CM Matthews D Bhella D Parker AL Identification of a novel structural motif and overexpression of key transcripts elucidated in Adenovirus 10 Biorxiv US 2025 doi:10.1101/2025.09.20.677498 2692-8205 EMD-53655 other EM volume 9r78 FULLOVERLAP EMDB EMD-53655 other EM volume EMDB EMD-53736 associated EM volume
Human Adenovirus D 10 Capsid Structure
 Human adenovirus D10 Human adenovirus D10 0 1 2 3 4 5 6
Propagation of viral stock in immortalised human cell line and purification by Caesium chloride density gradients.
Human adenovirus D10 VIRION SPECIES false true Pre-protein VI Human adenovirus D10 0.025546086 8 Homo sapiens LEVO MEDINFASLAPRHGTRPFMGTWNEIGTSQLNGGAFNWSSVWSGLKNFGSTLRTYGNKAWNSSTGQLLREKLKDQNFQQKV VDGLASGINGVVDIANQAVQREINSRLDPRPPTVVEMEDATLPPPKGEKRPRPDAEETILQVDEPPSYEEAVKAGMPTTR IIAPLATGVMKPATLDLPPPPAPAPPKATPVVQAPPVATAVRRVPARRQAQNWQSTLHSIVGLGVKSLKRRRCY K7ZRR7 Hexon protein Human adenovirus D10 0.10626842999999998 12 Homo sapiens LEVO MMPQWAYMHIAGQDASEYLSPGLVQFARATDTYFSLGNKFRNPTVAPTHDVTTDRSQRLTLRFVPVDREDTTYSYKARFT LAVGDNRVLDMASTYFDIRGVLDRGPSFKPYSGTAYNSLAPKSAPNPSQWTANEKQTGGQPKSVTQTFGSAPMGGSNITI EGLVIGTKEEEGNATEEIFADKTFQPEPQVGEENWQETEAFYGGRALKKDTKMKPCYGSFARPTNEKGGQAKLKLNDQGQ PTKDYDIDLAFFDTPGGTPPTGSGQQEEYKADIVMYTENVNLETPDTHVVYKPGKEDESSETNLTQQSMPNRPNYIGFRD NFVGLMYYNSTGNMGVLAGQASQLNAVVDLQDRNTELSYQLLLDSLGDRTRYFSMWNSAVDSYDPDVRIIENHGVEDELP NYCFPLNGTGTNSTYQGVKVKTGQDGAEETEWDKDETVARQNQIAKGNVYAMEINLQANLWKSFLYSNVALYLPDSYKYT PANVTLPANTNTYEYMNGRVVAPSLVDAYINIGARWSLDPMDNVNPFNHHRNAGLRYRSMLLGNGRYVPFHIQVPQKFFA IKNLLLLPGSYTYEWNFRKDVNMILQSSLGNDLRVDGASVRFDSVNLYATFFPMAHNTASTLEAMLRNDTNDQSFNDYLS AANMLYPIPAKATNVPISIPSRNWAAFRGWSFTRLKTKETPSLGSGFDPYFVYSGSIPYLDGTFYLNHTFKKVSIMFDSS VSWPGNDRLLTPNEFEIKRSVDGEGYNVAQCNMTKDWFLVQMLSHYNIGYQGFHVPEGYKDRMYSFFRNFQPMSRQVVDE INYKDYKAVTLPFQHNNSGFTGYLAPTMRQGQPYPANFPYPLIGQTAVPSVTQKKFLCDRVMWRIPFSSNFMSMGALTDL GQNMLYANSAHALDMTFEVDPMDEPTLLYLLFEVFDVVRVHQPHRGVIEAVYLRTPFSAGN K7ZJY8 Penton protein Human adenovirus D10 0.058631703 1 Homo sapiens LEVO MRRAVVSSSPPPSYESVMAQATLEVPFVPPRYMAPTEGRNSIRYSELAPQYDTTRVYLVDNKSADIASLNYQNDHSNFLT TVVQNNDFTPAEASTQTINFDERSRWGGDLKTILHTNMPNVNEYMFTSKFKARVMVARKHPEGVVETDLSQDKLEYEWFE FTLPEGNFSETMTIDLMNNAILENYLQVGRQNGVLESDIGVKFDSRNFKLGWDPVTKLVMPGVYTYEAFHPDVVLLPGCG VDFTESRLSNLLGIRKKQPFQEGFRIMYEDLEGGNIPALLDVPKYLESKKKVEDETKNAAAATADTTTRGDTFATPAQET AADKKVEVLPIEKDESGRSYNLIQGTHDTLYRSWYLSYTYGDPEKGVQSWTLLTTPDVTCGAEQVYWSLPDLMQDPVTFR STQQVSNYPVVGAELMPFRAKSFYNDLAVYSQLIRSYTSLTHVFNRFPDNQILCRPPAPTITTVSENVPALTDHGTLPLR SSIRGVQRVTVTDARRRTCPYVYKALGIVAPRVLSSRTF K7ZQ23 Pre-hexon-linking protein IIIa Human adenovirus D10 0.062170394999999996 1 Homo sapiens LEVO MQQAPDPAIRAALQSQPSGIASDDWEAAMQRIMALTTRNPESFRQQPQANRLSAILEAVVPSRTNPTHEKVLAIVNALAE NKAIRPDEAGLVYNALLERVGRYNSTNVQSNLDRLVTDVREAVAQRERFKNEGLGSLVALNAFLATQPANVPRGQDDYTN FISALRLMVTEVPQSEVYQSGPDYFFQTSRQGLQTVNLSQAFKNLRGLWGVQAPVGDRSTVSSLLTPNSRLLLLLIAPFT DSGSVNRNSYLGHLLTLYREAIGQAQVDEQTFQEITSVSRALGQNDTDSLRATLNFLLTNRQQKIPAQYALSAEEERILR YVQQSVGLFLMQEGATPSAALDMTARNMEPSMYAANRPFINKLMDYLHRAAVMNTDYFTNAILNPHWLPPPGFYTGEYDM PDPNDGFLWDDVDSVVFSPTFQKRQEAPPSEGAVGRSPFPSLGSLHSLPGSVNSGRVSRPRLLGEDEYLNDSLLQPPRAK NAMANNGIESLVDKLNRWKTYAQDHRDAPAPRRQRHDRQRGLVWDDEDSADDSSVLDLGGSGGVNPFAHLQPKLGRRMF K7ZMX4 Pre-hexon-linking protein VIII Human adenovirus D10 0.024660668 2 Homo sapiens LEVO MSKEIPTPYMWSYQPQMGLAAGASQDYSTRMNWLSAGPSMISRVNGVRNHRNQILLEQAAVTSTPRAKLNPRNWPSTLVY QEIPGPTTVLLPRDALAEVRMTNSGVQLAGGASRCPLRPQSGIKTLVIRGRGTQLNDELVSSSIGLRPDGVFQLAGAGRS SFTPNQAYLTLQSSSSEPRSGGIGTLQFVEEFVPSVYFNPFSGSPGLYPDEFIPNFDAVREAVDGYD K7ZJY9 Hexon-interlacing protein Human adenovirus D10 0.013773352 4 Homo sapiens LEVO MNGTGGAFEGGLFSPYLTTRLPGWAGVRQNVMGSTVDGRPVLPANSSTMTYATVGSSSLDSTAAAAAAAAAMTATRLASS YMPSSGSSPSVPSSIIAEEKLLALLAELEALSRQLAALTQQVSELREQQQQQNK K7ZLM2 singleParticle particle 7.4
Phosphate Buffered Saline (PBS) 137 mM NaCl, 2.7 mM KCl, 10 mM Na2HPO4, and 1.8 mM KH2PO4
 Quantifoil R2/2 COPPER 300 CARBON CONTINUOUS 3.0 GLOW DISCHARGE ETHANE TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 0.2 2.2 105000.0 GATAN K3 (6k x 4k) 1 40.0 1 CTFFIND 4.1.14 PHASE FLIPPING AND AMPLITUDE CORRECTION I 3.3 FSC 0.143 CUT-OFF RELION 3.1 5524 MAXIMUM LIKELIHOOD RELION 3.1 MAXIMUM LIKELIHOOD RELION 3.1 RELION 3.1 emd_53736.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 720 720 720 0 0 0 720 720 720 1193.76 1193.76 1193.76 90.0 90.0 90.0 X Y Z -0.09941467 0.11087721 0.0027774307 0.008876976 1.658 1.658 1.658 0.0216 AUTHOR Additional map of asymmetric unit of adenovirus capsid. Sharpened using phenix autosharpen and used for model building. Note this map does not share Cartesian coordinates with the primary or raw maps. RIGID BODY FIT REAL emd_53736_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 250 252 300 0 0 0 250 252 300 414.5 417.816 497.4 90.0 90.0 90.0 X Y Z -0.032192063 0.09239143 0.011154239 0.0110383835 1.658 1.658 1.658 AUTHOR Additional map of asymmetric unit of adenovirus capsid. Sharpened using phenix autosharpen and used for model building. Note this map does not share Cartesian coordinates with the primary or raw maps. emd_53736_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 720 720 720 0 0 0 720 720 720 1193.76 1193.76 1193.76 90.0 90.0 90.0 X Y Z -0.019904232 0.05737125 0.0027755168 0.0066899047 1.658 1.658 1.658 AUTHOR Half Map 1 from RELION Refine3D emd_53736_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 720 720 720 0 0 0 720 720 720 1193.76 1193.76 1193.76 90.0 90.0 90.0 X Y Z -0.019346712 0.05779407 0.0027793422 0.006672469 1.658 1.658 1.658 AUTHOR Half Map 2 from RELION Refine3D