2025-11-12 REL PDBe INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY DATABASE_REFERENCES citation citation_author em_admin _citation.country _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.page_first _citation.page_last _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _citation.year _citation_author.identifier_ORCID _citation_author.name _em_admin.last_update DATABASE_REFERENCES citation em_admin _citation.journal_volume _citation.title _em_admin.last_update PDBe PDBe 2025-04-11 2025-04-23 2025-04-23 2025-11-12 Biotechnology and Biological Sciences Research Council (BBSRC) BB/X01097X/1 United Kingdom Biotechnology and Biological Sciences Research Council (BBSRC) BB/Y005732/1 United Kingdom Turnip Crinkle Virus: virions (TCV-M) Saunders K Shah S Peyret H Meshcheriakova Y Richardson J Eltschkner S Lawson DM Lomonossoff G ssRNA plant virus, icosahedral, RNA packaging, VIRUS LIKE PARTICLE Saunders K Shah SN Peyret H Meshcheriakova Y Richardson J Eltschkner S Lawson DM Lomonossoff GP The Specificity of RNA Packaging in Isometric RNA Plant Viruses is Principally Determined by Replication. J.Mol.Biol. UK 437 169352 169352 2025 40706701 doi:10.1016/j.jmb.2025.169352 1089-8638 0070 JMOBAK EMD-53396 other EM volume 9qvg FULLOVERLAP EMDB EMD-53396 other EM volume EMDB EMD-53397 associated EM volume
Turnip Crinkle Virus: virions (TCV-M)
 PDB 9QVF unspecified Turnip crinkle virus Turnip crinkle virus 0 1
In the manuscript, this sample is designated TCV-M. The complete P38 coat protein gene was inserted into the pBin61 vector. Expression was initiated by infiltrating leaves of Nicotiana benthamiana with suspensions of Agrobacterium tumefaciens strain LBA4404 harbouring this vector.
Turnip crinkle virus M Brassica rapa subsp. rapa 6.86 capsid 340.0 3 VIRION STRAIN false false Capsid protein Turnip crinkle virus M 0.038170941 3 Nicotiana benthamiana LEVO MENDPRVRKFASDGAQWAIKWQKKGWSTLTSRQKQTARAAMGIKLSPVAQPVQKVTRLSAPVALAYREVSTQPRVSTARD GITRSGSELITTLKKNTDTEPKYTTAVLNPSEPGTFNQLIKEAAQYEKYRFTSLRFRYSPMSPSTTGGKVALAFDRDAAK PPPNDLASLYNIEGCVSSVPWTGFILTVPTDSTDRFVADGISDPKLVDFGKLIMATYGQGANDAAQLGEVRVEYTVQLKN RTGSTSDAQIGDFAGVKDGPRLVSWSKTKGTAGWEHDCHFLGTGNFSLTLFYEKAPVSGLENADASDFSVLGEAAAGSVQ WAGVKVAERGQGVKMVTTEEQPKGKWQALRI P06663 singleParticle particle 4.0 7.4
1 mM MgSO4 1mM NaPO4 and pH7.4
 Quantifoil R2/2 COPPER 300 CARBON HOLEY GLOW DISCHARGE
glow discharged for 60 seconds at 8 mA using an ACE 200 (Leica Microsystems)
 ETHANE 100 277 FEI VITROBOT MARK IV TFS TALOS F200C FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 50.0 2.7 0.7000000000000001 2.1 150000.0 GATAN ELSA 698 SINGLE TILT LIQUID NITROGEN CRYO TRANSFER HOLDER NITROGEN TFS FALCON 4i (4k x 4k) 4096 4096 1 2384 3.46 30.0 1 22567 cryoSPARC 4.5.3 PHASE FLIPPING AND AMPLITUDE CORRECTION 9QVF 1 I FOURIER SPACE 3.43 FSC 0.143 CUT-OFF cryoSPARC 4.5.3 9981 MAXIMUM LIKELIHOOD cryoSPARC 4.5.3 MAXIMUM LIKELIHOOD cryoSPARC 4.5.3 3 cryoSPARC 4.5.3
3 ab initio classes fed directly into heterogeneous refinement
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