2025-12-10 REL PDBe PDBe PDBe 2025-04-11 2025-12-10 2025-12-10 2025-12-10 European Research Council (ERC) 740329 European Union European Research Council (ERC) 101054447 European Union German Research Foundation (DFG) SFB1035 Germany Novo Nordisk Foundation 31199 Denmark German Federal Ministry for Education and Research DZD Germany human PAN2-PAN3 bound to a 90Ai/PABPC1 RNP Albrecht JC Reitinger T Basquin J Schuessler S Schaefer IB Conti E complex, mammalian, deadenylase, mRNA poly(A) tail, RNA processing, mRNA, RNA BINDING PROTEIN Albrecht JC Reitinger T Basquin J Schussler S Riggi M Schafer IB Conti E Mechanisms governing poly(A)-tail-length specificity of the human PAN2-PAN3 deadenylase complex. Cell Rep US 44 116609 116609 2025 41275497 doi:10.1016/j.celrep.2025.116609 2211-1247 EMD-53362 other EM volume
comes from same dataset
 EMDB EMD-53362 other EM volume
comes from same dataset
 EMDB EMD-53392 associated EM volume PDB 9QTU unspecified
model for EMD-53362
 heterotrimeric PAN2-PAN3 mRNA deadenylase complex composed of the regulatory PAN3 homodimer bound to the catalytic PAN2 in complex with an inhibitory 90Ai/PABPC1 RNP heterotrimeric PAN2-PAN3 mRNA deadenylase complex composed of the regulatory PAN3 homodimer bound to the catalytic PAN2 in complex with an inhibitory 90Ai/PABPC1 RNP 0 1 Homo sapiens human PAN2 Homo sapiens Homo sapiens LEVO MHSALDPVLDAHLNPSLLQN VELDPEGVALEALPVQESVH IMEGVYSELHSVVAEVGVPV SVSHFDLHEEMLWVGSHGGH ATSFFGPALERYSSFQVNGS DDIRQIQSLENGILFLTKNN LKYMARGGLIIFDYLLDENE DMHSLLLTDSSTLLVGGLQN HILEIDLNTVQETQKYAVET PGVTIMRQTNRFFFCGHTSG KVSLRDLRTFKVEHEFDAFS GSLSDFDVHGNLLAACGFSS RLTGLACDRFLKVYDLRMMR AITPLQVHVDPAFLRFIPTY TSRLAIISQSGQCQFCEPTG LANPADIFHVNPVGPLLMTF DVSASKQALAFGDSEGCVHL WTDSPEPSFNPYSRETEFAL PCLVDSLPPLDWSQDLLPLS LIPVPLTTDTLLSDWPAANS APAPRRAPPVDAEILRTMKK VGFIGYAPNPRTRLRNQIPY RLKESDSEFDSFSQVTESPV GREEEPHLHMVSKKYRKVTI KYSKLGLEDFDFKHYNKTLF AGLEPHIPNAYCNCMIQVLY FLEPVRCLIQNHLCQKEFCL ACELGFLFHMLDLSRGDPCQ GNNFLRAFRTIPEASALGLI LADSDEASGKGNLARLIQRW NRFILTQLHQDMQELEIPQA YRGAGGSSFCSSGDSVIGQL FSCEMENCSLCRCGSETVRA SSTLLFTLSYPDGSKSDKTG KNYDFAQVLKRSICLDQNTQ AWCDTCEKYQPTIQTRNIRH LPDILVINCEVNSSKEADFW RMQAEVAFKMAVKKHGGEIS KNKEFALADWKELGSPEGVL VCPSIEELKNVWLPFSIRMK MTKNKGLDVCNWTDGDEMQW GPARAEEEHGVYVYDLMATV VHILDSRTGGSLVAHIKVGE TYHQRKEGVTHQQWYLFNDF LIEPIDKHEAVQFDMNWKVP AILYYVKRNLNSRYNLNIKN PIEASVLLAEASLARKQRKT HTTFIPLMLNEMPQIGDLVG LDAEFVTLNEEEAELRSDGT KSTIKPSQMSVARITCVRGQ GPNEGIPFIDDYISTQEQVV DYLTQYSGIKPGDLDAKISS KHLTTLKSTYLKLRFLIDIG VKFVGHGLQKDFRVINLMVP KDQVLDTVYLFHMPRKRMIS LRFLAWYFLDLKIQGETHDS IEDARTALQLYRKYLELSKN GTEPESFHKVLKGLYEKGRK MDWKVPEPEGQTSPKNAAVF SSVLAL Q504Q3 human PAN3 short isoform Homo sapiens Homo sapiens LEVO MNSGGGLPPPSAAASPSSSS LAAAVAVVAPPGVGGVPGGA AVGVKLKYCRYYAKDKTCFY GEECQFLHEDPAAGAAPGLG LHSNSVPLALAGAPVAGFPP GAVAGGGAGPPPGPKKPDLG DPGTGAAAGGGGSSGGLDGP RLAIPGMDGGALTDTSLTDS YFSTSFIGVNGFGSPVETKY PLMQRMTNSSSSPSLLNDSA KPYSAHDPLTSPASSLFNDF GALNISQRRKTPNPTASEFI PKGGSTSRLSNVSQSNMSAF SQVFSHPSMGSPATAGLAPG MSLSAGSSPLHSPKITPHTS PAPRRRSHTPNPASYMVPSS ASTSVNNPVSQTPSSGQVIQ KETVGGTTYFYTDTTPAPLT GMVFPNYHIYPPTAPHVAYM QPKANAPSFFMADELRQELI NRHLITMAQIDQADMPAVPT EVDSYHSLFPLEPLPPPNRI QKSSNFGYITSCYKAVNSKD DLPYCLRRIHGFRLVNTKCM VLVDMWKKIQHSNIVTLREV FTTKAFAEPSLVFAYDFHAG GETMMSRHFNDPNADAYFTK RKWGQHEGPLPRQHAGLLPE SLIWAYIVQLSSALRTIHTA GLACRVMDPTKILITGKTRL RVNCVGVFDVLTFDNSQNNN PLALMAQYQQADLISLGKVV LALACNSLAGIQRENLQKAM ELVTINYSSDLKNLILYLLT DQNRMRSVNDIMPMIGARFY TQLDAAQMRNDVIEEDLAKE VQNGRLFRLLAKLGTINERP EFQKDPTWSETGDRYLLKLF RDHLFHQVTEAGAPWIDLSH IISCLNKLDAGVPEKISLIS RDEKSVLVVTYSDLKRCFEN TFQELIAAANGQLSAWSHPQ FEKGGGSGGGSGGSAWSHPQ FEK Q58A45 human PABPC1 Homo sapiens Escherichia coli LEVO MNPSAPSYPMASLYVGDLHP DVTEAMLYEKFSPAGPILSI RVCRDMITRRSLGYAYVNFQ QPADAERALDTMNFDVIKGK PVRIMWSQRDPSLRKSGVGN IFIKNLDKSIDNKALYDTFS AFGNILSCKVVCDENGSKGY GFVHFETQEAAERAIEKMNG MLLNDRKVFVGRFKSRKERE AELGARAKEFTNVYIKNFGE DMDDERLKDLFGKFGPALSV KVMTDESGKSKGFGFVSFER HEDAQKAVDEMNGKELNGKQ IYVGRAQKKVERQTELKRKF EQMKQDRITRYQGVNLYVKN LDDGIDDERLRKEFSPFGTI TSAKVMMEGGRSKGFGFVCF SSPEEATKAVTEMNGRIVAT KPLYVALAQRKEERQAHLTN QYMQRMASVRAVPNPVINPY QPAPPSGYFMAAIPQTQNRA AYYPPSQIAQLRPSPRWTAQ GARPHPFQNMPGAIRPAAPR PPFSTMRPASSQVPRVMSTQ RVANTSTQTMGPRPAAAAAA ATPAVRTVPQYKYAAGVRNP QQHLNAQPQVTMQQPAVHVQ GQEPLTASMLASAPPQEQKQ MLGERLFPLIQAMHPTLAGK ITGMLLEIDNSELLHMLESP ESLRSKVDEAVAVLQAHQAK EAAQKAVNSATGVPTVSAWSHPQFE K 90Ai RNA Homo sapiens
85A-GGG-AA RNA oligo
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGAA singleParticle particle 0.12 7.5 ETHANE-PROPANE 95 277 FEI VITROBOT MARK IV TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 100.0 2.62 0.5 2.8000000000000003 NITROGEN GATAN K3 BIOQUANTUM (6k x 4k) 1 3.5 70.0 1 cryoSPARC 4 PHASE FLIPPING AND AMPLITUDE CORRECTION 7.0 FSC 0.143 CUT-OFF cryoSPARC 4 16132 MAXIMUM LIKELIHOOD cryoSPARC 4 MAXIMUM LIKELIHOOD cryoSPARC 4 3 cryoSPARC 4 emd_53392.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 220 220 220 0 0 0 220 220 220 374.0 374.0 374.0 90.0 90.0 90.0 X Y Z -0.9091213 2.3995857 0.00079705333 0.073507115 1.7 1.7 1.7 0.28 AUTHOR human PAN2-PAN3 bound to the 90Ai/PABPC1 RNP, sharpened map AlphaFold in silico model RIGID BODY FIT emd_53392_msk_2.map emd_53392_msk_1.map emd_53392_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 220 220 220 0 0 0 220 220 220 374.0 374.0 374.0 90.0 90.0 90.0 X Y Z -0.941908 2.350122 0.0027590988 0.08195067 1.7 1.7 1.7 AUTHOR human PAN2-PAN3 bound to the 90Ai/PABPC1 RNP, half map A emd_53392_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 220 220 220 0 0 0 220 220 220 374.0 374.0 374.0 90.0 90.0 90.0 X Y Z -1.0086935 2.4192033 0.0028694242 0.082075365 1.7 1.7 1.7 AUTHOR human PAN2-PAN3 bound to the 90Ai/PABPC1 RNP, half map B