REL RCSB RCSB RCSB 2011-07-05 2011-07-13 2011-08-31 2011-09-07 Three-dimensional structure of bovine respirasome by single particle cryo-electron tomography Dudkina NV Kudryashev M Stahlberg H Boekema EJ Oxidative phosphorylation, mitochondria Dudkina NV Kudryashev M Stahlberg H Boekema EJ Interaction of complexes I, III, and IV within the bovine respirasome by single particle cryoelectron tomography. PROC.NAT.ACAD.SCI.USA 108 15196 15200 2011 21876144 doi:10.1073/pnas.1107819108 Respirasome from bovine mitochondria Respirasome from bovine mitochondria
The sample was thawed from storage at -80 degrees Celcius before being loaded onto the grid.
One monomer of NADH dehydrogenase binds to one dimer of cytochrome bc1 and one monomer of cytochrome c oxidase 1 1.7 1.7 blue-native gel electrophoresis respirasome Bos taurus wild type bovine heart heart muscle cells mitochondrion inner mitochondrial membrane 1.7 1.7
Solubilized with digitonin
1 monomer false subtomogramAveraging particle 0.5 7.0
25 mM Tricine, 7.5 mM Bis-Tris, 0.1 mM PMSF, 0.01% digitonin
 NEGATIVE
2.5 microliters were mixed with 10-nm gold particles as fiducial markers and applied on glow-discharged 200 mesh Quantifoil support grids with an additional carbon support film. Grids were blotted at 100% humidity for 4-6 seconds at a blot offset (the longitudinal grid positioning) setting of -3.5, using a Vitrobot Mk3 (FEI).
200 mesh copper Quantifoil grids with an additional carbon support film
 ETHANE 100 89 FEI VITROBOT MARK III
Vitrification instrument: Vitrobot Mk3 (FEI)
Blot for 4-6 seconds before plunging FEI POLARA 300 SPOT SCAN BRIGHT FIELD FIELD EMISSION GUN 200 2.0 2.0 2.0 34000.0 SIDE ENTRY, EUCENTRIC 15 77 objective lens astigmatism was corrected at 34,000 times magnification 0 FEI 0.0 20.0 2010-03-01 GENERIC GATAN (2k x 2k) 0.38 21 80 Multispecimen holder -70 70
The particles were selected from the tomograms by cross-correlation to an artificial globular reference followed by manual selection of particle volumes. Average number of projections used in the 3D reconstructions: 2466. Average number of class averages: 1.
OTHER 22.0 OTHER IMOD, XMIPP, AV3 emd_5319.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 128 128 128 0 0 0 128 128 128 486.4 486.4 486.4 90 90 90 X Y Z -0.230164 0.38968 0.000151277 0.0353204 3.8 3.8 3.8 0.1 AUTHOR EM map of respirasome from bovine mitochondria
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 1BGY RIGID BODY FIT UCSF Chimera
Protocol: Rigid Body
cross correlation REAL 1OCC RIGID BODY FIT UCSF Chimera
Protocol: Rigid Body
cross correlation REAL 3M9S RIGID BODY FIT UCSF Chimera
Protocol: Rigid Body
cross correlation REAL