<emd emdb_id="EMD-5314" version="3.0.1.1" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
    <admin>
        <current_status>
            <code>REL</code>
            <processing_site>RCSB</processing_site>
        </current_status>
        <sites>
            <deposition>RCSB</deposition>
            <last_processing>RCSB</last_processing>
        </sites>
        <key_dates>
            <deposition>2011-06-09</deposition>
            <header_release>2011-06-13</header_release>
            <map_release>2011-09-12</map_release>
            <update>2013-07-17</update>
        </key_dates>
        <title>Structures of the RNA-guided surveillance complex from a bacterial immune system</title>
        <authors_list>
            <author>Wiedenheft B</author>
            <author>Lander GC</author>
            <author>Zhou K</author>
            <author>Jore MM</author>
            <author>Brouns SJJ</author>
            <author>van der Oost J</author>
            <author>Doudna JA</author>
            <author>Nogales E</author>
        </authors_list>
        <keywords>Cascade, bacterial immune system, CRISPR, RNA-guided, ribo-nucleoprotein, ssRNA</keywords>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Wiedenheft B</author>
                    <author order="2">Lander GC</author>
                    <author order="3">Zhou K</author>
                    <author order="4">Jore MM</author>
                    <author order="5">Brouns SJ</author>
                    <author order="6">van der Oost J</author>
                    <author order="7">Doudna JA</author>
                    <author order="8">Nogales E</author>
                    <title>Structures of the RNA-guided surveillance complex from a bacterial immune system.</title>
                    <journal>NATURE</journal>
                    <volume>477</volume>
                    <first_page>486</first_page>
                    <last_page>489</last_page>
                    <year>2011</year>
                    <external_references type="PUBMED">21938068</external_references>
                    <external_references type="DOI">doi:10.1038/nature10402</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
    </crossreferences>
    <sample>
        <name>E. coli Cascade complex</name>
        <supramolecule_list>
            <sample_supramolecule supramolecule_id="1000">
                <name>E. coli Cascade complex</name>
                <details>The sample was monodisperse.</details>
                <oligomeric_state>one asymmetric complex</oligomeric_state>
                <number_unique_components>1</number_unique_components>
                <molecular_weight>
                    <experimental units="MDa">0.405</experimental>
                    <theoretical units="MDa">0.405</theoretical>
                    <method>Theoretical</method>
                </molecular_weight>
            </sample_supramolecule>
            <organelle_or_cellular_component_supramolecule supramolecule_id="1">
                <name synonym="Cascade">Cascade</name>
                <number_of_copies>1</number_of_copies>
                <oligomeric_state>Monomer</oligomeric_state>
                <external_references type="GO">GO:0051607</external_references>
                <recombinant_exp_flag>true</recombinant_exp_flag>
                <natural_source database="NCBI">
                    <organism ncbi="562">Escherichia coli</organism>
                    <strain>K12</strain>
                    <synonym_organism>Escherichia coli</synonym_organism>
                </natural_source>
                <molecular_weight>
                    <experimental units="MDa">0.405</experimental>
                    <theoretical units="MDa">0.405</theoretical>
                </molecular_weight>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
                </recombinant_expression>
            </organelle_or_cellular_component_supramolecule>
        </supramolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <concentration units="mg/mL">1.2</concentration>
                    <buffer>
                        <ph>7.5</ph>
                        <details>25 mM HEPES, 100 mM KCl, 1 mM TCEP</details>
                    </buffer>
                    <grid>
                        <details>200 mesh Cu grid</details>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <chamber_humidity units="percentage">95</chamber_humidity>
                        <chamber_temperature units="K">78</chamber_temperature>
                        <instrument>OTHER</instrument>
                        <details>Vitrification instrument: Vitrobot. blotting at 4 degrees C</details>
                        <method>4 microliter aliquot of purified sample placed onto C-flat that had been glow-discharged in a nitrogen atmosphere for 60 sec using an Edwards Carbon Evaporator. The grids were blotted for 3 seconds using a blotting offset of -1.</method>
                    </vitrification>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI TECNAI F20</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">120</acceleration_voltage>
                    <nominal_cs units="mm">2.2</nominal_cs>
                    <nominal_defocus_min units="&#181;m">0.8</nominal_defocus_min>
                    <nominal_defocus_max units="&#181;m">2.5</nominal_defocus_max>
                    <nominal_magnification>100000.0</nominal_magnification>
                    <specimen_holder_model>GATAN LIQUID NITROGEN</specimen_holder_model>
                    <temperature>
                        <temperature_min units="K">78</temperature_min>
                        <temperature_max units="K">78</temperature_max>
                        <temperature_average units="K">78</temperature_average>
                    </temperature>
                    <date>2010-09-17</date>
                    <image_recording_list>
                        <image_recording>
                            <film_or_detector_model category="CCD">GENERIC GATAN (4k x 4k)</film_or_detector_model>
                            <number_real_images>2370</number_real_images>
                            <average_electron_dose_per_image units="e/&#8491;^2">20</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                    <specimen_holder>Side entry liquid nitrogen-cooled cryo specimen holder</specimen_holder>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <details>From an initial set of 498137 automatically selected particles.  Pre-processed with Appion.</details>
                <ctf_correction>
                    <details>whole micrograph</details>
                </ctf_correction>
                <final_reconstruction>
                    <algorithm>OTHER</algorithm>
                    <resolution res_type="BY AUTHOR" units="&#8491;">8.8</resolution>
                    <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>EMAN2 SPARX</name>
                        </software>
                    </software_list>
                    <number_images_used>275573</number_images_used>
                </final_reconstruction>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="11665">
        <file>emd_5314.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>144</col>
            <row>144</row>
            <sec>144</sec>
        </dimensions>
        <origin>
            <col>-72</col>
            <row>-72</row>
            <sec>-72</sec>
        </origin>
        <spacing>
            <x>144</x>
            <y>144</y>
            <z>144</z>
        </spacing>
        <cell>
            <a units="&#8491;">331.19998</a>
            <b units="&#8491;">331.19998</b>
            <c units="&#8491;">331.19998</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-13.261092189999999</minimum>
            <maximum>19.555309300000001</maximum>
            <average>0.03946149</average>
            <std>0.45303169</std>
        </statistics>
        <pixel_spacing>
            <x units="&#8491;">2.3</x>
            <y units="&#8491;">2.3</y>
            <z units="&#8491;">2.3</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>2.0</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <annotation_details>reconstructed density of the E. coli cascade complex at 8 Angstroms resolution</annotation_details>
        <details>::::EMDATABANK.org::::EMD-5314::::</details>
    </map>
</emd>