2025-12-10 REL PDBe INITIAL_RELEASE REPOSITORY DATABASE_REFERENCES citation em_admin _citation.journal_volume _citation.page_first _em_admin.last_update PDBe PDBe 2025-03-11 2025-11-05 2025-11-05 2025-12-10 iNEXT-Discovery 24433 European Union Matzov D Georgeson G Westhof E Schwartz S Shalev-Benami M RNA modification, cryo-EM, ribosome Garcia-Campos MA Georgeson J Nir R Reichelt R Fluke KA Matzov D Iyer V Burkhart BW Lui L Kustanovich A Grunberger F Thalalla-Gamage S Howpay-Manage SA Gerovac M Alexandre N Nobe Y Nowak JS Perera M Apostle A Fang S Glatt S Jona G Ferreira-Cerca S Vogel J Taoka M Meier JL Westhof E Santangelo TJ Grohmann D Shalev-Benami M Schwartz S Cell 188 6825 2025 41130207 doi:10.1016/j.cell.2025.09.014 1097-4172 EMD-53068 consensus EM volume EMD-53069 focused EM volume EMD-53070 focused EM volume EMD-53071 focused EM volume 9qf4 FULLOVERLAP EMDB EMD-53068 consensus EM volume EMDB EMD-53069 focused EM volume EMDB EMD-53070 focused EM volume EMDB EMD-53071 focused EM volume EMDB EMD-53098 associated EM volume

Structure of P. furiosus 70S ribosome grown at 95 degC

P. furiosus 70S P. furiosus 70S 0 Pyrococcus furiosus 16S rRNA Pyrococcus furiosus 0.4890555 1 AUUC(4AC)GG(OMU)UGAUCCUG(5MC)CGGAGGCCACUGCUAUGGGGGUC(4AC)GACUAAGCCAUGCGAGUCAAGGG GGCGUCCCUUCUGGGACGCCAC(4AC)GGCGGACGGCUCAGUAACACGUCGGUAAC(OMC)UACCCUCGGGAGGG(OMG) GAUAACCC(4AC)GGGAAACUGG(OMG)(OMG)CUAAUCCCCCAUAGGCCUGGGGUACUGGAAGGUCCCCAGGCCGAAAG GGAGCCGUAAGGCUC(4AC)GCC(4AC)GAGGAU(OMG)(OMG)G(5MC)(4AC)GGCGGC(LHH)GAUUAGGUAGUUGG UGGGGUAACGGCCCACCAAG(5MC)(4AC)GAAGAUCGGUACGGGC(4AC)GUGAGAGCGGGAGCC(4AC)GGAGAUGGA CACUGAGACACG(OMG)GUCCAGGCCCUACGGGGCGCAGCAGGCGCGA(A2M)ACCUC(4AC)GCAAUGCGGGAAAC (4AC)GCGACGGGGGGACCCCCAGUGC(4AC)GUGCCUCUGGCACGGCUUU(OMU)(OMC)(4AC)GGAGUGUAAAAAGC UC(4AC)GGGAAUAAGG(OMG)CUG(OMG)GCAA(OMG)G(5MC)(4AC)GGUGG(5MC)AGCCGCC(7MG)CGGUAA (OMU)ACCGGCGGCC(4AC)GAGU(OMG)GU(OMG)GCCACUAUUAUUGGG(5MC)CUAAAGCGGC(4AC)GUAGC (4AC)(OMG)GGCC(4AC)GUAAGUCCCUGGCGAAAUCCCACGGCUCAAC(4AC)GUGGGGCUCGCUGGGGAUACUGCGG G(5MC)CUUGGGAC(4AC)GGGAGAGGC(4AC)GGGGGUACCCC(4AC)GGGGUAGG(OMG)GUGAAAUCCUAUAAUCCC GGGG(OMG)GACCGCCAGUGG(5MC)GAAGG(5MC)GCCCGGCUGGAACGGGUC(4AC)GACGGUGAGGGC(4AC)GAAG GCCAGGGGAGCGAAC(4AC)GGAUUAGAUACCCGGG(4SU)AGUC(OMC)(OMU)(OMG)GCUGUAAAGGA(OMU)G (5MC)GGGCUAGGUGUCGGGCGAGCUUCGAGCUCGCCCGGUG(5MC)(4AC)GU(A2M)GGGAAGC(4AC)GUUAA (OMG)(OMC)C(4AC)GC(4AC)GCCUGGGGAGUACGGC(4AC)GCAA(OMG)G(5MC)UGAAACUUAAAGGAAUUGGCG GGGGAGCACUACAAGG(OMG)GUGGAGCGUGCGGUUUAAUUGGAU(5MU)(LV2)AACGCCGGGAACCUCAC(4AC)GGG GG(5MC)GACGGCAGGAUGAAGGCCAGGCUGAAGGUCUUGCCGGACGCGCCGAGAGGA(OMG)(2MG)UGCAUGG(5MC) (5MC)GC(4AC)GUCAGCUCGUA(OMC)(LHH)GUGAGGCGUCCACUUAAGUGUGGUAACGAGCGAGACC(4AC)GCGCC CCCAGUUGCCAGUCCCUCCCGCUCGGGAGGGAGGCAC(OMU)CUGGGGGGACUG(5MC)CGGCGAUAAGC(4AC)GGAGG AAGGGGCGGGCGACGGUAGGUCAG(OMU)AUGCCCCGAAACCCC(4AC)GGGCUACA(5MC)GCG(OMC)GCUACAAUGG GCGGGACAAUGGGACC(4AC)GACC(OMC)(4AC)GAAAGGGGAAGGGAAUCCCCUAAACC(4AC)GCCCUCAGUUCGGA UCGCGGGCUGCAACUCGCC(4AC)GCGUGAAGCUGGAAUCCCUAGUACC(4AC)GCGUGUCAUCAUCGCGCGGCGAAUAC GUCCCUGCUCCUUGCACACAC(5MC)G(OMC)C(5MC)G(OMU)CA(OMC)UCCACCCGAGCGGAGUCCGGGUGAGGCCU GAUCUCCUUCGGGAGGUCA(OMG)GUCGAGCCCGGGCUCCGUGAGGGGGGAGAAGUCGUA(MA6)CAAGGUAGC(4AC)G UAGGGG(MA6)(MA6)CCUACGG(5MC)U(5MC)GAUCACCUCCU Small ribosomal subunit protein uS2 Pyrococcus furiosus 0.023039861 1 LEVO MADEYLVPLDQYLAAGVHIGTQQKTKDMKKFIYRVRQDGLYVLDVRKTDERLKVAGKFLAKFEPQSILAVSVRLYGQKPV KKFGEVTGARAIPGRFLPGTMTNPAVKNFFEPDVLIVTDPRADHQAMREAVEIGIPIVALVDTENLLSYVDLAIPTNNKG RKALALIYWILAREILYNRGEIQSREDFKIPVEEFEMKIVRR Q8U0F0 Small ribosomal subunit protein uS3 Pyrococcus furiosus 0.023464351999999997 1 LEVO MAIERYFIREAVREMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILEKQFGLENPQI EVEEIKNPYLNAKVQAVRLAQALERGIHFRRAAYAALRAIMNNGARGVEIRLSGKLTGERAKSIRFYQGYLAKVGNPAET LVSKGYAQALLKLGVIGVKVAIMPPGARLPDEIEIIEKPVEEEVVSNEAE Q8U004 Small ribosomal subunit protein eS1 Pyrococcus furiosus 0.022984107 1 LEVO MAAKRATTTRDKWKLKQWYIIYAPDFFGGVEVGLTPADDPEKVLNRVVEVTLKDVTGDFTKSHVKLYFQVYDVKGQNAYT KFKGMKLARSYIRSLVRRKTTRIDGIFNITTKDGYKLRVMAMAIAMRRIQTSQERAIRKIMQEIIYKKAEELNFKDFVLE SVNGKIAAEIAKEAKKIYPLRKAEIRKIKVLEEPQVIA Q8TZE1 Small ribosomal subunit protein uS4 Pyrococcus furiosus 0.02138191 1 LEVO MGDPKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAEIEREQLLARLKRL GLLPEDAVLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF ANPQHPERMMIEKAKQGGEA P61993 Small ribosomal subunit protein eS4 Pyrococcus furiosus 0.028197022999999998 1 LEVO MARKGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKD YKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEDEAFIKPLRIRNKRMIKGARVQLNFHDGTNHIVSIAEKDNYFT SYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVTIEDEEGELFDTLKEYAFVVGTDKPKI SLP Q8U011 Small ribosomal subunit protein uS5 Pyrococcus furiosus 0.026590891 1 LEVO MSQEWKEYAKRVLDEWEPKTKLGMMVKEGQITDIHEIFRRGYQIKEPEIIDVLLPEVNARENQEVLDIALTVRMTDSGRR VRFRVLAAVGNRDGYVGLGIGHGKEVGIAIRKAINYAKLNIIEIKRGCGSWECRCRRPHSVPFAVEGKEGSVRVRLIPGP RGLGLVIGDVGKKILRLAGVQDVWSQTFGETRTTVNFAKAVFNALYNTNRVAISPEMIERYGIVVGRAMPTTFTLE Q8U017 Small ribosomal subunit protein eS6 Pyrococcus furiosus 0.014002329999999999 1 LEVO MATFKLVISDPKSGIAKQVEITGAETEKLIGKRIGDQIPAKELNINLNELFGKEFPEDVKLEIRGGTDKDGFPMRPDIHG PRRVRVLLSKGPGFRPKEKGERRKKTVRGNTISPEIVQVNVKLVY Q8U3H8 Small ribosomal subunit protein uS7 Pyrococcus furiosus 0.024701791 1 LEVO MAKPLNERFFIPHEIKVMGRWSTEDVEVRDPSLKPYINLEPRLLPHTHGRHAKKHFGKANVHIVERLINKIMRSGGSHYK VAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEQRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDV ALRNIALGASAKCYRNKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR Q8U0M8 Small ribosomal subunit protein uS8 Pyrococcus furiosus 0.014684174 1 LEVO MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGVYRVQLLGRINKAGAIKPRFP VKVSEFEKWEKRFLPAFEFGILIVSTSQGVMSHKEAIEKGIGGRLIAYVY Q8U014 Small ribosomal subunit protein eS8 Pyrococcus furiosus 0.014293733 1 LEVO MAIWQGRSLKKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNRKVRLTAAAYANVFDKSGKGRKVRIIRV IENPANRQFARRNIITKGAIIETEIGKAKVTSRPGQDGVVNAILLEE Q8U1Y5 Small ribosomal subunit protein uS9 Pyrococcus furiosus 0.015317932 1 LEVO MRIIQTTGKRKTAIARAVIREGKGRVRINGKPVEIIEPEIARFTILEPLILAGEEIWNSVDIDVKVEGGGFMGQAEAARM AIARALVEWTGDMSLKEKFMKYDRTMLVGDPRRTEPHKPNRSTKGPRAKRQKSYR Q8U0E7 Small ribosomal subunit protein uS10 Pyrococcus furiosus 0.011769689 1 LEVO MQKARIKIASTNVRSLDEVANQIKQIAERTGVRMSGPIPLPTKRIRITTRKSPDGEGSATFDRWELRVHKRLIDIEADER AMRQIMRIRVPEDVTIEIELIS P61885 Small ribosomal subunit protein uS11 Pyrococcus furiosus 0.01475695 1 LEVO MSEEQVNIKKKEKWGIAHIYSSFNNTIIHITDITGAETISRWSGGMVVKADRDEPSPYAAMLAARRAAEEALEKGIVGVH IRVRAPGGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGTRPKGGRRGRRV Q8U0E3 Small ribosomal subunit protein uS12 Pyrococcus furiosus 0.016477620999999998 1 LEVO MPGKKAPNGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKN GKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPRR P61995 Small ribosomal subunit protein uS13 Pyrococcus furiosus 0.016948903999999997 1 LEVO MANFRHIVRVAGVDLDGNKQLRWALTAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILADPVAHGIPRWAVN RPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRGQRTRSNFRRGQTVGVSRKKK Q8U0E2 Small ribosomal subunit protein uS14 Pyrococcus furiosus 0.006634046 1 LEVO MAKADYNKRKPRKFGKGARRCIRCGQYGPIIRIQGLMLCRHCFREVAPKLGFRKYE Q8U013 Small ribosomal subunit protein uS15 Pyrococcus furiosus 0.018640025 1 LEVO MARMHARKRGKSGSKRPPRTAPPIWVEYTVEEIENLVVKLRKEGYSTAMIGTILRDQYGIPSVKLFKDPDNPNRNLTITR ILEKHGLAPEIPEDLMFLIRRAVNLRKHLEQHPKDLHSMRGLQLIESKIRRLVKYYKRKGKLPKNWRYDPETAKLLVR Q8TZD9 Small ribosomal subunit protein uS17 Pyrococcus furiosus 0.013296521 1 LEVO MMRDIGLRVQPPAEKCDDPKCPWHGNLKIHGRVFEGIVVSDKPRKTVTVERQYYFYLNKYERYELRRSKIHAHNPPCINA KVGDKVLIAETRPLSKTKHFVVVAVLERAEERR Q8U008 Small ribosomal subunit protein eS17 Pyrococcus furiosus 0.007942465 1 LEVO MGKIRQGFIKRVARELVNKYPNEFTTDFEHNKKKVQELTNVTSKKIRNRIAGYVTKLVRMKMEGKIL Q8U0U1 Small ribosomal subunit protein uS19 Pyrococcus furiosus 0.015357398999999999 1 LEVO MARKEFRYRGYTLEQLMNMSLEELARLFPARQRRSLKRGLTPEQKKLLRKIRLAKKGKYKKPIRTHCRDMIILPEMVGLT IYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKKVEHGAPGVGATRSSMFVAVK Q8U002 Small ribosomal subunit protein eS19 Pyrococcus furiosus 0.017394236 1 LEVO MATVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRVYLDGPVGIERLRTYYGGR KNRGHAPEKFYKAGGSIIRKALQQLEAAGFVEKVPGKGRVITPKGRSFLDKIATELKKELEEIIPELKKY Q8U0T4 Small ribosomal subunit protein eS24 Pyrococcus furiosus 0.011698564 2 LEVO MEIRIKEIKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYISKGYAKAYDSKERMLY IEPEYILIRDGLIEKKEGE Q8U442 Small ribosomal subunit protein eS27 Pyrococcus furiosus 0.006888388 1 LEVO MAKPIIPMPRSRFLRVKCIDCGNEQIVFSHPATKVRCLICGATLVEPTGGKGIVKAKILEVLE Q8U474 Small ribosomal subunit protein eS28 Pyrococcus furiosus 0.008116332 1 LEVO MAEDEGYPAEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRIGDILILRETEREAREIKSRR Q8U159 Zn-ribbon RNA-binding protein Pyrococcus furiosus 0.0068240079999999995 1 LEVO MVEMKFEIPVCTSCGREITPREHATHFICPNCGEAVIWRCESCRVLAKPYKCPNCGWEGP I6U991 23S rRNA Pyrococcus furiosus 0.997558 1 GGGGCUAGGACGCUAAGC(4AC)GCC(4AC)GGUGGAUGGCUCGGCUCGGGGCG(OMC)(4AC)GACGAA(OMG)GGCGU GGCAAGCUGCGAUAAGCCC(4AC)GGCGAGGCGCAGGCAG(5MC)(4AC)GUCGAAC(4AC)GGGGAUUCC(4AC)GAAU GGGACCUCC(4AC)GCGGCUUAUGC(4AC)GCACUCCGGGGUUUAUCCC(4AC)GGAGGGGGAACGCGGGGAAUUGAAAC AUCUUAGUACC(4AC)GCAGGAAAAGAAA(OMG)CAAAAGCGAUGC(4AC)GUGAGUAGGGGCGAC(4AC)GAAAACGG (5MC)AGAGGGCAAACUGAACCC(4AC)GGGC(LHH)GACGAGGUUCGGGGGAUGUGGGGUUGUAGGGCCCCCGUAUGAG ACCCUCGCGGGUGAAG(5MC)(4AC)GAAGUC(4AC)GCUGGAACGCGGCGC(4AC)GGAGAGGGUGAUAGCCC(4AC)G UAGGCGUAAGCCCGCAGGGUCUCGGGGGACCCUGAGUAC(4AC)GUCGGUUGGAUAUC(4AC)GGCGGGAAGCUGGGAGG CA(OMU)CGGCUCCCAACCCUAAAUACGUCCCGAGAC(4AC)GAUAGCGAACUAGUA(OMC)(LHH)GUG(A2M)GGGAA AGCUGAAAAGCACCC(LHH)GG(OMG)AGGGGGGUGAAAAGAGCCU(OMG)AAACCGGGCGGCGAUAGGAGGGUGCGGCC (4AC)GAAAGGAAUGAGCCUCCC(4AC)GAAGGAAAC(4AC)GCGGCGACGCGGGAGUACGAGGGGAGGGGAC(4AC)GG GGUUGCAC(4AC)GUCCGUCUUGAAACACGGGGCA(OMG)GGAGUUCGCGGC(4AC)GUGGCGAGGUUAAGGGGGUUAAG CCC(4AC)GUAGC(4AC)GCAGGGAAAC(4AC)GACAUGCCCGCAGCCGGGCUUAUGCCCGGUGAGGGGCGGGGUGCGAA AGCGCC(4AC)GGAGUCACGGCCGCGAGACC(4AC)(OMG)AAAC(4AC)GGUCGAUCUAGCC(4AC)GGGGCAGGGUGA AGUCCCUCAACCGAGGG(A2M)UGGAGGCC(4AC)GCUAGGGGUG(5MC)UG(A2M)UG(5MU)GCA(OMG)(5MU)UCG CUCC(4AC)GUGACCC(OMC)GGGCUAGGGGUGAAA(OMG)(OMG)CCAA(OMU)CGAGG(5MC)(4AC)GGAGAU (A2M)GCUGGUUCC(4AC)GC(4AC)GAAUCAUCCCGCAGGAUGGCCUCCC(4AC)GGAGGUAGGCGGUGGGGUAGAGCA CUGAUUGGAGGUGCAGGGGGCGAAAGCCCCCGGCCUCCUGUCAAACUC(4AC)GAACCCAC(4AC)GC(4AC)GC(4AC) GUAGAUGGGGGGAGUAGGGUGGCGGUGUAAG(OMC)(4AC)GUCCAC(4AC)GAGAGGGGAACAACCCAGAC(4AC)GGG GUUAAGGCCCCAAAGUGC(4AC)GGCUAAGUGUUACUCCAAAGGGUGUCC(4AC)GGGCCUUAGACAGCGGGGAGGUAGG CUUAGAAGCAGCCAUCCUUUAAAGAGUGCGUAACAGCUCACCCGUCGAGGUCCGGGGCCC(4AC)GAAAAUGGACGGGGC UCAAGC(4AC)GGC(4AC)GC(4AC)GAGACCC(4AC)GGCGCACGGAC(4AC)GAUUGGUC(4AC)GUGAUCGGGUAGG CGGGCGUG(5MC)(4AC)GGUGGCGUAGAAGCCGGGCCGUAAGGUC(4AC)GGUGGAGC(4AC)GCCGGUAUCGCGGAUC CUGCCGGGAGUAGCAGCGUAGUCGGGUGAGAAUCC(4AC)GAC(4AC)GC(4AC)GGAGGGGCCAGGGUUCCACGGCAAU GGUCGUCAGC(4AC)GUGGGUUAG(OMU)(OMC)GGUCCUAACCC(4AC)GCC(4AC)GUAACUCGGCGCGGGGGAAAGG GAAAC(OMG)GGUUUAUAUUCC(4AC)GUAC(4AC)GCGGGGGUAGGUGCGGCAACGCAAGCC(4AC)GGAGGGUGACGC CUCGGGGUAGGCGGAC(4AC)GGCCGAUGAGGCCGGCUAAGCGUAUAAGCC(4AC)GGGGAGUG(5MC)(4AC)GUAAUG GCGAGAAC(4AC)GGGUGAAAGCGCGAAUGGCCCCCCCGUUAGGGGGGUUCCGC(4AC)GAUCCCUGGGGCCCGUGAAAA GCCCUCCGGGAAUUC(4AC)GAUCCCC(4AC)GCGAC(4AC)GUAC(4AC)GAGAAC(4AC)GACACAGGUGCCCCUGGG UGAGAAGCCUAAGGCGUGUCGGGGGAAACC(4AC)GGC(4AC)GAGGGAACU(OMC)GGCAAACUGGCCC(4AC)GUAAC UUCGGGAGAAGGGGUGCCUGCGGGUGCGUAACC(4AC)GCAGGUCGCAGUGACUAG(OMG)GGGGCC(4AC)GA(OMC)U GUUUAAUAAAAACACAGGUCCCAGCUAGCC(LHH)GAAAGGGUUUGUACUGGG(OMG)(5MC)(4AC)GACGC(5MC)UG C(5MC)CAG(OMU)G(5MC)CGGUAUGUGAAGCCCGGGUACAA(OMC)(4AC)GGGUGAAGCAC(4AC)G(OMG)UAAAC (OMG)GCGGGGGUAACUAUAAC(OMC)(5MC)UCUUAAGGUAG(OMC)GAAAUUC(5MC)UUGUCGGUUAAAUG(5MC) (4AC)GAC(5MC)UGCAUGAAUGGCGUAACGAG(OMG)UCCC(4AC)GCUGUCCCCGGCCGGGGCC(4AC)GGCGAAACC UCUGCCUGGCGCGCAUGCCAGGGACCCC(4AC)GGUGGGAA(OMG)CGAAGACCCCAUGGAGCUUUACUGCAGCCUGC (4AC)GUUGCCACACGGCGGGGGGUGCGCAGCGUAGGCGGGAGGCGUCGAAGCCCGGCCUCCGGGUCGGGUGGAGCCGUC CAUGAGACACCGCCCACUCCCCGCUGUGUGGCUAACCCCCGAAAGGGGGGACAGCGGUAGGUGGGCAGUUUGGCUG (OMG)GGCGGCACGCCUC(4AC)GAAAAGGUAUC(OMG)GAGGCGCCC(OMU)AAGGUCGGCUCAGGCGGGUCAGGAAU (OMC)(4AC)GC(4AC)GUAGAGUGCAAGGGCAAAAG(5MC)(4AC)GGCCUGACUGGACC(4AC)GUAACAGAGGCGGG UCCAGCCC(4AC)GAAAGGGUGGCCU(A2M)GCGAACCCCUGUGCCUCCC(4AC)GGUGGGGGCCAGG(OMG)AUGACAG AAAAGC(OMU)AC(OMC)CUGG(OMG)GA(4SU)AACAGAGUCGUCUCGGGCGAGAGCCCAUAUCGACCC(4AC)GAGG (OMC)UUGCUACCU(5MC)GCUGUCGGCUCUUCCCAUCCUGGCCCUGCAGCAGGGGCCAA(OMG)GGUGGGGG(OMU)GU UCACCCAUUAAAG(OMG)GGAACGUGAGCUGGG(UR3)UUAGACCGUCGUGAGACAGGUCGGAUGCUAUCUA(OMC)CGG G(OMG)GUGUUGGC(4AC)GCCUGAG(OMG)GGAAGGUGCCCCUAGUACGAGAGGAACAGGGUGC(4AC)GCGGCCUCUG GUCUA(OMC)(4AC)GGUUGUCCUCC(4AC)GGGCAUCGCCGGGCAGCUACGC(4AC)GCAGC(4AC)GAUAAGGCCUGA AAGCAUCUAAGG(5MC)(4AC)GAAGCGGCCCC(4AC)GAAAAUAGGCGG(5MC)(4AC)GUUCCCUGGCGCUUGGGCCU GGGCGACCGGCCCAUUGCCAGGGACGAGGGCUCGGGUAGAAGACC(LHH)GGUUGAUAGGGCGGG(OMG)AUGUAAGCGG GAAGGGUCAAC(4AC)GACC(4AC)GCUUAGUC(4AC)GC(4AC)GCCCCUAAUCGCC(4AC)GAGGUCCUGCCCCU 5S rRNA Pyrococcus furiosus 0.04067334399999999 1 GGUACGGCGGCCAUAGCGGGGGGGCCACACC(4AC)GGUCUCAUUUCGAACCCGGAAGUUAAGCCCCCCAGCGAUCCCGG UUGUACUGCCCUC(4AC)GAGAGGGGGCGGGAAGC(4AC)GGGGACGC(4AC)GC(4AC)GGCCA Large ribosomal subunit protein uL2 Pyrococcus furiosus 0.026085379 1 LEVO MGKSLIQQRRGKGSPTFKSPSHRFRGAVKYIPLNYTQEKTLRGVVEEIMHDPGRTAPVARVKFENGIEKLIIAPEGLLVG QEIYIGPDAPIAVGNTLPLAKIPEGTYVYNIEGIPGDGGKYVRAGGTYALVVSREPDKVIVQLPSGELKAFNPMCRATIG VVAGGGRLEKPLVKAGKAYYKYKARNKFWPTPRGVKMNAVNHPFGGKEHHPGKPTTTSRRAPPGRKVGHIAARRTGRRK Q8U001 Large ribosomal subunit protein uL3 Pyrococcus furiosus 0.041465969

50S ribosomal protein L3P

1 LEVO MGKVHRPRRGSLGFSPRKRAKSIVPRIRSWPKETEVRMLGFAGYKAGMTHILMIDDEPGLTNGKEIFMPVTIIETPPLRV FGIRAYRMGYLGLETATEVIVPDFPLDNYPAKERKGKPKPKMTFYKLLERRIATLPKNYTQEMFEQKLGQLEDMIKEGEI VDVRAIVATQPWVIKLKKKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIK LRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGKLKLDENTEIEITPKGGFPHYGIVRSD FMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSVESKQ Q8TZZ8 Large ribosomal subunit protein uL4 Pyrococcus furiosus 0.028765779 1 LEVO MKVKVFDLNGQPVGEIELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHSMARVERLKTPPRYA AFVPFARGGRRTHPPKVEKIIWEDINKKEKRLALMSAIAATANYDLVRARGHIIDNVPQLPLIVVDDLQKVQKTRETREI FKKLGIWDDIVRAKEKSGVRAGKGKMRGRRYKKAKGPLIVVGKNEGIVLGARNHPGVDVVVVDNLGVEHLAPGTHPGRLT VWTVSAIERLRELYG Q8TZZ9 Large ribosomal subunit protein uL5 Pyrococcus furiosus 0.021269877 1 LEVO MAVEIPNKEQILADWEAHPMRRPRIEKVTINIGVGESGERLTKAEIMLQQLTGQKPIRRKAKKTNRDFGIRRGEPIAVKV TLRGPKAYELLKRLLAAVDNRLKASSFDEHGNVCFGIEEHINIPGVEYDPEIGIFGMDVCVTLERPGFRVARRKRKRAKI PTRHKLTKEEGMVYMMEEFGVEIVEG Q8U012 Large ribosomal subunit protein uL6 Pyrococcus furiosus 0.020891188999999998 1 LEVO MPVDAWIREEVEIPEGVEVTVEGYKVKVKGPKGELEREFFWPGIQIFTEDGNVVIYKDFPRRKDVAIARTFAAHIRNMIK GVTEGFTYKLKVVYSHFPISVKVQGDEVIIENFLGEKAPRKAKILPGVTVKVRGQEIIVEGIDKEAVGQTAANIEQATRI TKWDRRIFQDGIYIVEKAGKPITF Q8U015 Large ribosomal subunit protein eL8 Pyrococcus furiosus 0.013414664 2 LEVO MAKPSYVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYV PSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVKELMK Q8U160 Large ribosomal subunit protein uL16 Pyrococcus furiosus 0.020974361 1 LEVO MALRPAKIDRYVDKPAYTRREYIRGAPGPKITIFDMGNPAGDFEFEVSLHTAEPVQIRQNALEAARQQVNRYLQKNVGRS NYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKKDQKILSIRVNRQHLKFAIEGARRAAMKFPCKC YYRIYDKEGNDVTTKILSQSL Q9UWP5 Large ribosomal subunit protein uL13 Pyrococcus furiosus 0.016345384 1 LEVO MRIINAEGLILGRLASKVAKMLLEGEEVVIVNAEKAVITGNRDVIFKKYKQRTELRTLTNPRRGPFYPKRSDEIVRRTIR GMLPWKTDRGRKAFKRLKVYVGIPKEFQGKELETIIEAHVSRLSRPKYVTVGEVAKFLGGKF Q8U0E6 Large ribosomal subunit protein uL14 Pyrococcus furiosus 0.015264865999999998 1 LEVO MAKKGAGATRGVSAVRPTRALPVGAYLTVADNSGAKVIQIIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDMRHQVVRA VIIRQRKEYRRLDGMRVKFEDNAAVIVTPEGVPRGTEIRGPVAREAAERWVRIGSIASIIV Q8U009 Large ribosomal subunit protein eL14 Pyrococcus furiosus 0.008979659 2 LEVO MPAIDVGRIAVVIAGRRAGQKVVVVDIIDKNFVLVTGAGLNKVKRRRMNIKHIEPLPQKIDIPRGASDEEVRAALEKAGI SLA Q8U2L5 Large ribosomal subunit protein uL15 Pyrococcus furiosus 0.016439346 1 LEVO MIRRRKKVRKLRGSHTHGWGCKKKHRGGGSKGGRGMAGTGKRNKSKWTWTIKYAPDHLGKRGFSRPPEVQREVRVVNLKF IDEHLDELMQMGIAYEEGGKIIVDVTQFADKVLGTGKLTRPLVIKARAFSPKAEEKIKAAGGEAVLV Q8U018 Large ribosomal subunit protein eL15 Pyrococcus furiosus 0.022644896 1 LEVO MGMYKYIREAWKSPKKSYVGELLKQRMIKWRREPVVVRIERPTRLDRARALGYQAKQGYVIVRVRVRKGGRKRPRWKGGR KPSKMGQVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPKIAWIALKHHKGRVFR GLTSAGKKGRGLRNKGKGAEKVRPSIRANEGKGK Q8U2F9 Large ribosomal subunit protein uL18 Pyrococcus furiosus 0.023233868999999997 1 LEVO MAHGPRYRVPFRRRREGKTNYRKRLKLLKSGKPRLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGHCGNT PSAYLLGLLIGYKAKQAGIEEAILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIFPDEYRIRGEHIAEYAKMLKEQD EEKFRRQFGGYLVKGLDPEKLPEHFEEVKARIIEKFEGEGARE Q9HH80 Large ribosomal subunit protein eL18 Pyrococcus furiosus 0.013758036999999999 1 LEVO MKRTGPTDPNLRRLIRYLRKKSNEYGVKIWKDVAWRLERPRRQRAEVNVSKINRYANDGEMIVVPGSVLGAGKLEKKVIV AAWKFSETARRKIIEAGGEAITIEELIERNPTGSGVRIME Q8U0E5 Large ribosomal subunit protein eL19 Pyrococcus furiosus 0.0179206 1 LEVO MNTLKMQRRIAAEILKCGENRIWIDPERIDDVASAITREDIKRLIKEGVIKKKPIKGQSRYRAKIRHEQKKKGRHRGPGS RKGKKTARMGKKELWIKTIRALRKELRKLKAQKKIDRKTYRMLYIRAKGGQFKNKHQLYLFLEEHGLLKK Q8U016 Large ribosomal subunit protein eL21 Pyrococcus furiosus 0.011371449 1 LEVO MVQKAHSFRRKTRKKLSKHPRRRGLPPLTRFLQEFEVGQRVHIVIEPSYHKGMPDPRFHGRTGTVVGKRGEAYIVEIKDG SKVKTLFIHPVHLRPQK Q8U217 Large ribosomal subunit protein uL22 Pyrococcus furiosus 0.017679818 1 LEVO MAKRFGYSFQNFDPKRMARASARDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALKRPVPLKRYNDSQGHKPGKGFGP GRYPVKVAKAIKKVLLNVKNNAVQKGLDPDKLKIIHIAAHKGPVLRGWYPRAFGRATPFNEQTTHIEVVVEEIRR Q8U003 Large ribosomal subunit protein uL23 Pyrococcus furiosus 0.009893677 1 LEVO MDPYKVIIRPVVTEKAISLIEKENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVA ARLGLF Q8U000 Large ribosomal subunit protein uL24 Pyrococcus furiosus 0.014364968999999998 1 LEVO MKISSKQPRKQRKFLYNAPLHVRQKLMSAPLSRELREKYKVRNLPVRVGDKVRIMRGDYKGHEGKVVEVDLKRYRIYVEG ATLRKTNGTEVFYPIHPSNVMIIELNLEDEKRKKIIERRAG Q8U010 Large ribosomal subunit protein eL24 Pyrococcus furiosus 0.007938256999999999 1 LEVO MARWNVCSYCGKPFEPGTGKMYVRNDGRVLFFCSRKCERYYFMGRNPRKLKWTKAYQEARLQRGGE Q8U158 Large ribosomal subunit protein uL29 Pyrococcus furiosus 0.008549290000000001 1 LEVO MKPSEIREMSIEEIDAKIRELRLQLAKERGLLTMGTSLENPMVIRNLRRDIARLLTIKKEKLREREKGKVKK Q8U005 Large ribosomal subunit protein uL30 Pyrococcus furiosus 0.017745029 1 LEVO MAKLAVIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEINAETLAKLIRKRGRLIGNKPV TDEYVKEKLGMTIEEFAQKVVNGEMSLKDLPNLKPVFRLHPPRGGFRGSKKRSFKEGGALGYRGEKINELIERML Q9HH78 Large ribosomal subunit protein eL30 Pyrococcus furiosus 0.010727575999999999 1 LEVO MDLAFELRKAMETGKVVLGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGTSVELGTLLGKPFVV ASLAIVDPGESKILAIAKR Q8U0M6 Large ribosomal subunit protein eL31 Pyrococcus furiosus 0.011083242 1 LEVO MAIKAGEEVIFTVPIKKIKKIVPRWKRAPRAVKFVREFVARHAKAQEVIIDPKVNEKIWERGIEKPPSKLRVKVKVEEEK REGEETVRIAYVTLA Q8U3S7 Large ribosomal subunit protein eL32 Pyrococcus furiosus 0.015576629 1 LEVO MDEKEFKRLLRVRARLKRKKPRFLRQEWWRYPKFKNDPKWRRPKGIDSKMRLKLKGKPRSPSIGWSSPKLVRGLHPSGYE EVLVHNVKELEALDPKRQAARIAHTVGKKKRIEIIKRAEELGIKVLNPRV Q9HH82 Large ribosomal subunit protein eL34 Pyrococcus furiosus 0.010677131999999999 1 LEVO MKPMYRSRSWRRKYVRTPGGRVVIHFERKKPKIAHCAMCGRPLNGIPRGRPVEMRKLPKTKKRPERPMPHLCPRCMRKVM KEQIRAQLS Q8U2L3 Large ribosomal subunit protein eL33 Pyrococcus furiosus 0.009755559999999998 1 LEVO MRIKGVVLSYRRSKENQHNNVMIIKPLDVNSREEASKLIGRLVLWKSPSGKILKGKIVRVHGTKGAVRARFEKGLPGQAL GDYVEIV Q8TZV6 Large ribosomal subunit protein eL37 Pyrococcus furiosus 0.007245577 1 LEVO MGSGTATFGKRNSTPTHIRCRRCGRVSYNVKKGYCAACGFGRSRRLRKYRWSKKWKKKKNAH Q8U0P5 Large ribosomal subunit protein eL43 Pyrococcus furiosus 0.008956689 1 LEVO MSGTKKVGSAGRFGARYGLKIRRRVAAVEAKMRQKHTCPVCGRKAVKRISTGIWQCQKCGATFAGGAYLPVTPAGKAVRR ITE Q8TZI4 Large ribosomal subunit protein eL39 Pyrococcus furiosus 0.006323783999999999 1 LEVO MARNKPLAKKLRLAKALKQNRRVPVWVIVKTNRRVLTHPKRRYWRRTKLKE Q8U3S6 Large ribosomal subunit protein eL40 Pyrococcus furiosus 0.005858063 1 LEVO MARFPEAEARIFKKYVCLRCGATNPWGAKKCRKCGYKRLRPKAKEPRGGGR Q8U0V6 Small ribosomal subunit protein eS32 Pyrococcus furiosus 0.005023395 1 LEVO MKRRPRKWKKKGRMRWKWIKKRIRRLKRQRKKERGLI Q8U232 Large ribosomal subunit protein eL42 Pyrococcus furiosus 0.011234449 1 LEVO MKYPKQIRTYCPFCKKHTIHKVERVKKRPRSELSAGQRRFRRILKGYGGFPRPKPEGREKPVKKLDLRFRCTECGKAHTR GRGFRVKKFELVEG Q8U475 Large ribosomal subunit protein eL20 Pyrococcus furiosus 0.009350004999999998 1 LEVO MKVKVFRVHGYFEKNGRKFKFTKEYRGIKEEDVKELVYSDIGSKHKVKRNKIFIKEIKEIRPEEAEDIVVRRLSLEL Q8U3S9 C2H2-type domain-containing protein Pyrococcus furiosus 0.007597191 1 LEVO MVKLKAIIVKDRDGEEFLRCPRCGMVFKRRKDYTKHVNKAHGWLFGRGKPKGKRLQKKYLKASQ Q8U2K5 ZINC ION 6.5409e-05 13 ZN water 1.8015e-05 2495 HOH singleParticle particle 7.5 ETHANE TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 0.5 3.0 GATAN K3 (6k x 4k) 1.01 1 PHASE FLIPPING AND AMPLITUDE CORRECTION 4V6U 2.59 FSC 0.143 CUT-OFF cryoSPARC 169992 PROJECTION MATCHING PROJECTION MATCHING emd_53098_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 448 448 448 0 0 0 448 448 448 443.52002 443.52002 443.52002 90.0 90.0 90.0 X Y Z -0.51407486 1.2432055 0.003737717 0.041620746 0.99000007 0.99000007 0.99000007 AUTHOR ::::EMDATABANK.org::::EMD-53098:::: Composite cryo-EM map of P. furiosus 70S grown at 95 degC