2026-01-28 REL PDBe INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY PDBe PDBe 2025-03-09 2025-12-17 2025-12-17 2026-01-28 Medical Research Council (MRC, United Kingdom) MR/V009354/1 United Kingdom Cryo-EM map of apo-XPF-ERCC1-SLX4(330-555)-SLX4IP from a DNA-containing sample. Feng J Matthews-Palmer T Greber BJ DNA repair, endonuclease, multiprotein complex, HYDROLASE Feng J Martin PR Kowalski S Lecot M Cronin NB Matthews-Palmer T Niedzwiedz W Greber BJ Molecular basis of XPF-ERCC1 targeting to SLX4-dependent DNA repair pathways. Nat Commun UK 17 522 522 2025 41402316 doi:10.1038/s41467-025-67216-3 2041-1723 EMD-53058 other EM volume EMDB EMD-53058 other EM volume EMDB EMD-53059 associated EM volume XPF-ERCC1-SLX4(330-555)-SLX4IP complex XPF-ERCC1-SLX4(330-555)-SLX4IP complex 0 1 2 Homo sapiens 0.21 singleParticle particle 0.2 7.9 20.0 HEPES-KOH 200.0 KCl Potassium chloride 2.0 MnCl2 Manganese chloride UltrAuFoil R1.2/1.3 GOLD 300 GOLD HOLEY PLASMA CLEANING ETHANE 100 277 FEI VITROBOT MARK IV
The sample contained a two-fold excess of DNA fork substrate over protein complex.
 TFS GLACIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 20.0 2.7 0.4 1.7 165000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN TFS Selectris 10
Fringe-free imaging used.
TFS FALCON 4i (4k x 4k) 11694 60.0 1 cryoSPARC 4.4.1 RELION 5.0-beta PHASE FLIPPING AND AMPLITUDE CORRECTION EMD-10337 C1 3.8 FSC 0.143 CUT-OFF RELION 5.0-beta 72254 MAXIMUM LIKELIHOOD cryoSPARC 4.4.1 MAXIMUM LIKELIHOOD RELION 5.0-beta 2 RELION 5.0-beta emd_53059.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 140 140 140 0 0 0 140 140 140 196.0 196.0 196.0 90.0 90.0 90.0 X Y Z -0.026808148 0.09180922 0.0005916046 0.0052095903 1.4 1.4 1.4 0.02 AUTHOR Post-processed (un-sharpened, filtered) half map. 9QEE PDB experimental model RIGID BODY FIT REAL emd_53059_msk_1.map emd_53059_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 140 140 140 0 0 0 140 140 140 196.0 196.0 196.0 90.0 90.0 90.0 X Y Z -0.034413017 0.09203209 0.00058565877 0.005503384 1.4 1.4 1.4 AUTHOR Unfiltered half-map from refinement. emd_53059_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 140 140 140 0 0 0 140 140 140 196.0 196.0 196.0 90.0 90.0 90.0 X Y Z -0.032475635 0.100547306 0.0005975505 0.005569654 1.4 1.4 1.4 AUTHOR Unfiltered half-map from refinement.