Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

2026-04-15 REL PDBe INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY PDBe PDBe 2025-02-04 2026-04-15 2026-04-15 2026-04-15 Ministry of Education, Youth and Sports of the Czech Republic CZ.02.2.69/0.0/0.0/18_053/0017705 Czech Republic Ministry of Education, Youth and Sports of the Czech Republic LX22NPO5103 Czech Republic Technology Agency of the Czech Republic FW03010628 Czech Republic Agence Nationale de la Recherche (ANR) ANR-22-CE11-0012 RibioTiX France Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin Novotna M Boissier F Balikova Novotna G Innis CA Innis CA Antibiotic, Translation, Ribosome, Clincelin, Protein synthesis inhibitor, Staphylococcus aureus Novotna M Slavik P Demay F Mahor D Reha D Boissier F Pokorna J Vimberg V Brajerova M Stefani T Svoboda J Gazak R Marz M Hosek J Koberska M Eigner V Hanzlikova L Kuzma M Krutova M Kamenik Z Sigut K Janata J Innis CA Balikova Novotna G Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin To Be Published 0353 9i89 FULLOVERLAP EMDB EMD-52712 associated EM volume

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 Staphylococcus aureus NE1858 50S 1 1 2 3 4 5 6 7 8 9 10 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 48 51 Staphylococcus aureus NE1858 30S 1 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 49 50 Staphylococcus aureus NE1858 Large ribosomal subunit protein bL28 Staphylococcus aureus JE2 0.006995288999999999 1 LEVO MGKQCFVTGRKASTGNRRSHALNSTKRRWNANLQKVRILVDGKPKKVWVSARALKSGKVTRV Q2FHL4 Large ribosomal subunit protein uL29 Staphylococcus aureus JE2 0.008105266 1 LEVO MKAKEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIRTVRKTIARLKTVAREREIEQSKANQ A8Z349 Large ribosomal subunit protein uL30 Staphylococcus aureus JE2 0.006565683 1 LEVO MAKLQITLTRSVIGRPETQRKTVEALGLKKTNSSVVVEDNPAIRGQINKVKHLVTVEEK Q2FEQ7 Large ribosomal subunit protein bL32 Staphylococcus aureus JE2 0.006500609 1 LEVO MAVPKRRTSKTRKNKRRTHFKISVPGMTECPNCGEYKLSHRVCKNCGSYNGEEVAAK Q2FHV3 Large ribosomal subunit protein bL33A Staphylococcus aureus JE2 0.005944937 1 LEVO MRVNVTLACTECGDRNYITTKNKRNNPERIEMKKYCPRLNKYTLHRETK Q2FYU6 Large ribosomal subunit protein bL34 Staphylococcus aureus JE2 0.005454642 1 LEVO MVKRTYQPNKRKHSKVHGFRKRMSTKNGRKVLARRRRKGRKVLSA Q2FDE6 Large ribosomal subunit protein bL35 Staphylococcus aureus JE2 0.007722368 1 LEVO MPKMKTHRGAAKRVKRTASGQLKRSRAFTSHLFANKSTKQKRQLRKARLVSKSDMKRVKQLLAYKK Q2FG57 Large ribosomal subunit protein bL36 Staphylococcus aureus JE2 0.004318422 1 LEVO MKVRPSVKPICEKCKVIKRKGKVMVICENPKHKQRQG Q2FER2 5S ribosomal RNA Staphylococcus aureus JE2 0.036974944999999995 1 UCUGGUGACUAUAGCAAGGAGGUCACACCUGUUCCCAUGCCGAACACAGAAGUUAAGCUCCUUAGCGUCGAUGGUAGUCG AACUUACGUUCCGCUAGAGUAGAACGUUGCCAGGC CP020619.1 Large ribosomal subunit protein uL24 Staphylococcus aureus JE2 0.011561504 1 LEVO MHIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKHQKPTQLNPEGGILETEAAIHVSNVQLLDPKTNEPTR VGYKFVDGKKVRIAKKSGEEIKSNN Q2FEQ0 fMet-P-tRNA Staphylococcus aureus JE2 0.024788754 1 CGCGGGAUGGAGCAGUUCGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGGUGGUUCAAAUCCGCCUCCCGCAACCA Large ribosomal subunit protein uL2 Staphylococcus aureus JE2 0.030217163999999998 1 LEVO MAIKKYKPITNGRRNMTSLDFAEITKTTPEKSLLKPLPKKAGRNNQGKLTVRHHGGGHKRQYRVIDFKRNKDGINAKVDS IQYDPNRSANIALVVYADGEKRYIIAPKGLEVGQIVESGAEADIKVGNALPLQNIPVGTVVHNIELKPGKGGQIARSAGA SAQVLGKEGKYVLIRLRSGEVRMILSTCRATIGQVGNLQHELVNVGKAGRSRWKGIRPTVRGSVMNPNDHPHGGGEGRAP IGRPSPMSPWGKPTLGKKTRRGKKSSDKLIVRGRKKK Q2FEP2 Large ribosomal subunit protein uL3 Staphylococcus aureus JE2 0.023760256 1 LEVO MTKGILGRKIGMTQVFGENGELIPVTVVEAKENVVLQKKTVEVDGYNAIQVGFEDKKAYKKDAKSNKYANKPAEGHAKKA DAAPKRFIREFRNVDVDAYEVGQEVSVDTFVAGDVIDVTGVSKGKGFQGAIKRHGQSRGPMSHGSHFHRAPGSVGMASDA SRVFKGQKMPGRMGGNTVTVQNLEVVQVDTENKVILVKGNVPGPKKGLVEIRTSIKKGNK Q2FEN9 Large ribosomal subunit protein uL4 Staphylococcus aureus JE2 0.022495697 1 LEVO MANYDVLKLDGTKSGSIELSDAVFGIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVSGGGRKPWKQKGTGRARQGTIRA PQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKAQENGLTVVDAFNFEAPKTKEFKNVLSTLEQPKKVLVVTENED VNVELSARNIPGVQVTTAQGLNVLDITNADSLVITEAAAKKVEEVLG Q2FEP0 Large ribosomal subunit protein uL5 Staphylococcus aureus JE2 0.020296637 1 LEVO MNRLKEKFNTEVTENLMKKFNYSSVMEVPKIDKIVVNMGVGDAVQNSKVLDNAVEELELITGQKPLVTKAKKSIATFRLR EGMPIGAKVTLRGERMYEFLDKLISVSLPRVRDFQGVSKKAFDGRGNYTLGVKEQLIFPEIDYDKVSKVRGMDIVIVTTA NTDEEARELLANFGMPFRK Q2FEQ1 Large ribosomal subunit protein uL6 Staphylococcus aureus JE2 0.019818580000000002 1 LEVO MSRVGKKIIDIPSDVTVTFDGNHVTVKGPKGELSRTLNERMTFKQEENTIEVVRPSDSKEDRTNHGTTRALLNNMVQGVS QGYVKVLELVGVGYRAQMQGKDLILNVGYSHPVEIKAEENITFSVEKNTVVKVEGISKEQVGALASNIRSVRPPEPYKGK GIRYQGEYVRRKEGKTGK Q2FEQ4 Large ribosomal subunit protein uL13 Staphylococcus aureus JE2 0.016359427 1 LEVO MRQTFMANESNIERKWYVIDAEGQTLGRLSSEVASILRGKNKVTYTPHVDTGDYVIVINASKIEFTGNKETDKVYYRHSN HPGGIKSITAGELRRTNPERLIENSIKGMLPSTRLGEKQGKKLFVYGGAEHPHAAQQPENYELRG Q2FES1 Large ribosomal subunit protein uL14 Staphylococcus aureus JE2 0.013157342 1 LEVO MIQQETRLKVADNSGAREVLTIKVLGGSGRKTANIGDVIVCTVKNATPGGVVKKGDVVKAVIVRTKSGVRRNDGSYIKFD ENACVIIRDDKGPRGTRIFGPVARELREGNFMKIVSLAPEVL Q2FEP9 Large ribosomal subunit protein uL15 Staphylococcus aureus JE2 0.01562889 1 LEVO MKLHELKPAEGSRKERNRVGRGVATGNGKTSGRGHKGQKARSGGGVRPGFEGGQLPLFRRLPKRGFTNINRKEYAIVNLD QLNKFEDGTEVTPALLVESGVVKNEKSGIKILGNGSLDKKLTVKAHKFSASAAEAIDAKGGAHEVI Q2FEQ8 Large ribosomal subunit protein uL16 Staphylococcus aureus JE2 0.016274049 1 LEVO MLLPKRVKYRRQHRPKTTGRSKGGNYVTFGEFGLQATTTSWITSRQIESARIAMTRYMKRGGKVWIKIFPHTPYTKKPLE VRMGAGKGAVEGWIAVVKPGRILFEVAGVSEEVAREALRLASHKLPVKTKFVKREELGGETNES Q2FEP6 Large ribosomal subunit protein bL17 Staphylococcus aureus JE2 0.013771773 1 LEVO MGYRKLGRTSDQRKAMLRDLATSLIISERIETTEARAKEVRSVVEKLITLGKKGDLASRRNAAKTLRNVEILNEDETTQT ALQKLFGEIAERYTERQGGYTRILKQGPRRGDGAESVIIELV Q2FER6 Large ribosomal subunit protein uL18 Staphylococcus aureus JE2 0.013124093 1 LEVO MISKIDKNKVRLKRHARVRTNLSGTAEKPRLNVYRSNKHIYAQIIDDNKGVTLAQASSKDSDIATTATKVELATKVGEAI AKKAADKGIKEIVFDRGGYLYHGRVKALAEAARESGLEF Q2FEQ5 Large ribosomal subunit protein bL19 Staphylococcus aureus JE2 0.013392771 1 LEVO MTNHKLIEAVTKSQLRTDLPSFRPGDTLRVHVRIIEGTRERIQVFEGVVIKRRGGGVSETFTVRKISSGVGVERTFPLHT PKIEKIEVKRRGKVRRAKLYYLRSLRGKAARIQEIR Q2FHJ7 Large ribosomal subunit protein bL20 Staphylococcus aureus JE2 0.013720294999999999 1 LEVO MPRVKGGTVTRARRKKTIKLAKGYFGSKHTLYKVAKQQVMKSGQYAFRDRRQRKRDFRKLWITRINAAARQHEMSYSRLM NGLKKAGIDINRKMLSEIAISDEKAFAQLVTKAKDALK Q2FG58 Large ribosomal subunit protein bL21 Staphylococcus aureus JE2 0.011354081 1 LEVO MFAIIETGGKQIKVEEGQEIFVEKLDVNEGDTFTFDKVLFVGGDSVKVGAPTVEGATVTATVNKQGRGKKITVFTYKRRK NSKRKKGHRQPYTKLTIDKINA Q2FG80 Large ribosomal subunit protein uL22 Staphylococcus aureus JE2 0.012857921999999999 1 LEVO MEAKAVARTIRIAPRKVRLVLDLIRGKNAAEAIAILKLTNKASSPVIEKVLMSALANAEHNYDMNTDELVVKEAYANEGP TLKRFRPRAQGRASAINKRTSHITIVVSDGKEEAKEA Q2FEP4 Large ribosomal subunit protein uL23 Staphylococcus aureus JE2 0.010625398 1 LEVO MEARDILKRPVITEKSSEAMAEDKYTFDVDTRVNKTQVKMAVEEIFNVKVASVNIMNYKPKKKRMGRYQGYTNKRRKAIV TLKEGSIDLFN Q2FEP1 Large ribosomal subunit protein bL25 Staphylococcus aureus JE2 0.023810609 1 LEVO MASLKSIIRQGKQTRSDLKQLRKSGKVPAVVYGYGTKNVSVKVDEVEFIKVIREVGRNGVIELGVGSKTIKVMVADYQFD PLKNQITHIDFLAINMSEERTVEVPVQLVGEAVGAKEGGVVEQPLFNLEVTATPDNIPEAIEVDITELNINDSLTVADVK VTGDFKIENDSAESVVTVVAPTEEPTEEEIEAMEGEQQTEEPEVVGESKEDEEKTEE Q2FJE0 Large ribosomal subunit protein bL27 Staphylococcus aureus JE2 0.010334798000000001 1 LEVO MLKLNLQFFASKKGVSSTKNGRDSESKRLGAKRADGQFVTGGSILYRQRGTKIYPGENVGRGGDDTLFAKIDGVVKFERK GRDKKQVSVYAVAE Q2FG82 Small ribosomal subunit protein uS2 Staphylococcus aureus JE2 0.029136369 1 LEVO MAVISMKQLLEAGVHFGHQTRRWNPKMKKYIFTERNGIYIIDLQKTVKKVDEAYNFLKQVSEDGGQVLFVGTKKQAQESV KSEAERAGQFYINQRWLGGLLTNYKTISKRIKRISEIEKMEEDGLFEVLPKKEVVELKKEYDRLIKFLGGIRDMKSMPQA LFVVDPRKERNAIAEARKLNIPIVGIVDTNCDPDEIDYVIPANDDAIRAVKLLTAKMADAILEGQQGVSNEEVAAEQNID LDEKEKSEETEATEE Q2FHI2 Small ribosomal subunit protein uS3 Staphylococcus aureus JE2 0.024143866999999996 1 LEVO MGQKINPIGLRVGIIRDWEAKWYAEKDFASLLHEDLKIRKFIDNELKEASVSHVEIERAANRINIAIHTGKPGMVIGKGG SEIEKLRNKLNALTDKKVHINVIEIKKVDLDARLVAENIARQLENRASFRRVQKQAITRAMKLGAKGIKTQVSGRLGGAD IARAEQYSEGTVPLHTLRADIDYAHAEADTTYGKLGVKVWIYRGEVLPTKNTSGGGK Q2FEP5 Small ribosomal subunit protein uS4 Staphylococcus aureus JE2 0.023051416 1 LEVO MARFRGSNWKKSRRLGISLSGTGKELEKRPYAPGQHGPNQRKKLSEYGLQLREKQKLRYLYGMTERQFRNTFDIAGKKFG VHGENFMILLASRLDAVVYSLGLARTRRQARQLVNHGHILVDGKRVDIPSYSVKPGQTISVREKSQKLNIIVESVEINNF VPEYLNFDADSLTGTFVRLPERSELPAEINEQLIVEYYSR Q2FG18 Small ribosomal subunit protein uS5 Staphylococcus aureus JE2 0.017770512 1 LEVO MARREEETKEFEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAIKKAVEAAKKDLVVVPRVEGT TPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPINMVRATIDGLQNLKNAEDVAKLRGKT VEELYN Q2FEQ6 Small ribosomal subunit protein bS6 Staphylococcus aureus JE2 0.011613146 1 LEVO MRTYEVMYIVRPNIEEDAKKALVERFNGILATEGAEVLEAKDWGKRRLAYEINDFKDGFYNIVRVKSDNNKATDEFQRLA KISDDIIRYMVIREDEDK Q2FJP8 Small ribosomal subunit protein uS8 Staphylococcus aureus JE2 0.014854315 1 LEVO MTMTDPIADMLTRVRNANMVRHEKLELPASNIKKEIAEILKSEGFIKNVEYVEDDKQGVLRLFLKYGQNDERVITGLKRI SKPGLRVYAKASEMPKVLNGLGIALVSTSEGVITDKEARKRNVGGEIIAYVW Q2FEQ3 Small ribosomal subunit protein uS9 Staphylococcus aureus JE2 0.014642725 1 LEVO MAQVEYRGTGRRKNSVARVRLVPGEGNITVNNRDVREYLPFESLILDLNQPFDVTETKGNYDVLVNVHGGGFTGQAQAIR HGIARALLEADPEYRGSLKRAGLLTRDPRMKERKKPGLKAARRSPQFSKR A6QJ59 Small ribosomal subunit protein uS10 Staphylococcus aureus JE2 0.011598503 1 LEVO MAKQKIRIRLKAYDHRVIDQSAEKIVETAKRSGADVSGPIPLPTEKSVYTIIRAVHKYKDSREQFEQRTHKRLIDIVNPT PKTVDALMGLNLPSGVDIEIKL Q2FEN8 Small ribosomal subunit protein uS11 Staphylococcus aureus JE2 0.013907977999999998 1 LEVO MARKQVSRKRRVKKNIENGVAHIRSTFNNTIVTITDEFGNALSWSSAGALGFKGSKKSTPFAAQMASETASKSAMEHGLK TVEVTVKGPGPGRESAIRALQSAGLEVTAIRDVTPVPHNGCRPPKRRRV Q2FER4 Small ribosomal subunit protein uS12 Staphylococcus aureus JE2 0.01532087 1 LEVO MPTINQLVRKPRQSKIKKSDSPALNKGFNSKKKKFTDLNSPQKRGVCTRVGTMTPKKPNSALRKYARVRLSNNIEINAYI PGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGALDTSGVDGRRQGRSLYGTKKPKN Q2FJ95 Small ribosomal subunit protein uS13 Staphylococcus aureus JE2 0.013747918999999999 1 LEVO MARIAGVDIPREKRVVISLTYIYGIGTSTAQKILEEANVSADTRVKDLTDDELGRIREVVDGYKVEGDLRRETNLNIKRL MEISSYRGIRHRRGLPVRGQKTKNNARTRKGPVKTVANKKK Q2FER3 Small ribosomal subunit protein uS14B Staphylococcus aureus JE2 0.007317769 1 LEVO MAKTSMVAKQQKKQKYAVREYTRCERCGRPHSVYRKFKLCRICFRELAYKGQIPGVRKASW Q2FEQ2 Small ribosomal subunit protein uS15 Staphylococcus aureus JE2 0.010634329999999999 1 LEVO MAISQERKNEIIKEYRVHETDTGSPEVQIAVLTAEINAVNEHLRTHKKDHHSRRGLLKMVGRRRHLLNYLRSKDIQRYRE LIKSLGIRR Q2FHG5 Small ribosomal subunit protein bS16 Staphylococcus aureus JE2 0.010253886 1 LEVO MAVKIRLTRLGSKRNPFYRIVVADARSPRDGRIIEQIGTYNPTSANAPEIKVDEALALKWLNDGAKPTDTVHNILSKEGI MKKFDEQKKAK Q2FHK0 Small ribosomal subunit protein uS17 Staphylococcus aureus JE2 0.010196888000000001 1 LEVO MSERNDRKVYVGKVVSDKMDKTITVLVETYKTHKLYGKRVKYSKKYKTHDENNSAKLGDIVKIQETRPLSATKRFRLVEI VEESVII Q2FEP8 Small ribosomal subunit protein bS18 Staphylococcus aureus JE2 0.009332018 1 LEVO MAGGPRRGGRRRKKVCYFTANGITHIDYKDTELLKRFISERGKILPRRVTGTSAKYQRMLTTAIKRSRHMALLPYVKEEQ Q2FJP6 Small ribosomal subunit protein uS19 Staphylococcus aureus JE2 0.010639309 1 LEVO MARSIKKGPFVDEHLMKKVEAQEGSEKKQVIKTWSRRSTIFPNFIGHTFAVYDGRKHVPVYVTEDMVGHKLGEFAPTRTF KGHVADDKKTRR Q2FEP3 Small ribosomal subunit protein bS20 Staphylococcus aureus JE2 0.009039472 1 LEVO MANIKSAIKRVKTTEKAEARNISQKSAMRTAVKNAKTAVSNNADNKNELVSLAVKLVDKAAQSNLIHSNKADRIKSQLMT ANK Q2FGD8 23S ribosomal RNA Staphylococcus aureus JE2 0.9467256249999999 1 GAUUAAGUUAUUAAGGGCGCACGGUGGAUGCCUUGGCACUAGAAGCCGAUGAAGGACGUUACUAACGACGAUAUGCUUUG GGGAGCUGUAAGUAAGCUUUGAUCCAGAGAUUUCCGAAUGGGGAAACCCAGCAUGAGUUAUGUCAUGUUAUCGAUAUGUG AAUACAUAGCAUAUCAGAAGGCACACCCGGAGAACUGAAACAUCUUAGUACCCGGAGGAAGAGAAAGAAAAUUCGAUUCC CUUAGUAGCGGCGAGCGAAAUGGGAAGAGCCCAAACCAACAAGCUUGCUUGUUGGGGUUGUAGGACACUCUAUACGGAGU UACAAAGGACGACAUUAGACGAAUCAUCUGGAAAGAUGAAUCAAAGAAGGUAAUAAUCCUGUAGUCGAAAAUGUUGUCUC UCUUGAGUGGAUCCUGAGUACGACGGAGCACGUGAAAUUCCGUCGGAAUCUGGGAGGACCAUCUCCUAAGGCUAAAUACU CUCUAGUGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGUGAAAAGCACCCCGGAAGGGGAGUGAAAUAGAACCUGAAA CCGUGUGCUUACAAGUAGUCAGAGCCCGUUAAUGGGUGAUGGCGUGCCUUUUGUAGAAUGAACCGGCGAGUUACGAUUUG AUGCAAGGUUAAGCAGUAAAUGUGGAGCCGUAGCGAAAGCGAGUCUGAAUAGGGCGUUUAGUAUUUGGUCGUAGACCCGA AACCAGGUGAUCUACCCUUGGUCAGGUUGAAGUUCAGGUAACACUGAAUGGAGGACCGAACCGACUUACGUUGAAAAGUG AGCGGAUGAACUGAGGGUAGCGGAGAAAUUCCAAUCGAACCUGGAGAUAGCUGGUUCUCUCCGAAAUAGCUUUAGGGCUA GCCUCAAGUGAUGAUUAUUGGAGGUAGAGCACUGUUUGGACGAGGGGCCCCUCUCGGGUUACCGAAUUCAGACAAACUCC GAAUGCCAAUUAAUUUAACUUGGGAGUCAGAACAUGGGUGAUAAGGUCCGUGUUCGAAAGGGAAACAGCCCAGACCACCA GCUAAGGUCCCAAAAUAUAUGUUAAGUGGAAAAGGAUGUGGCGUUGCCCAGACAACUAGGAUGUUGGCUUAGAAGCAGCC AUCAUUUAAAGAGUGCGUAAUAGCUCACUAGUCGAGUGACACUGCGCCGAAAAUGUACCGGGGCUAAACAUAUUACCGAA GCUGUGGAUUGUCCUUUGGACAAUGGUAGGAGAGCGUUCUAAGGGCGUUGAAGCAUGAUCGUAAGGACAUGUGGAGCGCU UAGAAGUGAGAAUGCCGGUGUGAGUAGCGAAAGACGGGUGAGAAUCCCGUCCACCGAUUGACUAAGGUUUCCAGAGGAAG GCUCGUCCGCUCUGGGUUAGUCGGGUCCUAAGCUGAGGCCGACAGGCGUAGGCGAUGGAUAACAGGUUGAUAUUCCUGUA CCACCUAUAAUCGUUUUAAUCGAUGGGGGGACGCAGUAGGAUAGGCGAAGCGUGCGAUUGGAUUGCACGUCUAAGCAGUA AGGCUGAGUAUUAGGCAAAUCCGGUACUCGUUAAGGCUGAGCUGUGAUGGGGAGAAGACAUUGUGUCUUCGAGUCGUUGA UUUCACACUGCCGAGAAAAGCCUCUAGAUAGAAAAUAGGUGCCCGUACCGCAAACCGACACAGGUAGUCAAGAUGAGAAU UCUAAGGUGAGCGAGCGAACUCUCGUUAAGGAACUCGGCAAAAUGACCCCGUAACUUCGGGAGAAGGGGUGCUCUUUAGG GUUAACGCCCAGAAGAGCCGCAGUGAAUAGGCCCAAGCGACUGUUUAUCAAAAACACAGGUCUCUGCUAAACCGUAAGGU GAUGUAUAGGGGCUGACGCCUGCCCGGUGCUGGAAGGUUAAGAGGAGUGGUUAGCUUCUGCGAAGCUACGAAUCGAAGCC CCAGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCCGCACGAAAGG CGUAACGAUUUGGGCACUGUCUCAACGAGAGACUCGGUGAAAUCAUAGUACCUGUGAAGAUGCAGGUUACCCGCGACAGG ACGG(MA6)AAGACCCCGUGGAGCUUUACUGUAGCCUGAUAUUGAAAUUCGGCACAGCUUGUACAGGAUAGGUAGGAGCC UUUGAAACGUGAGCGCUAGCUUACGUGGAGGCGCUGGUGGGAUACUACCCUAGCUGUGUUGGCUUUCUAACCCGCACCAC UUAUCGUGGUGGGAGACAGUGUCAGGCGGGCAGUUUGACUGGGGCGGUCGCCUCCUAAAAGGUAACGGAGGCGCUCAAAG GUUCCCUCAGAAUGGUUGGAAAUCAUUCAUAGAGUGUAAAGGCAUAAGGGAGCUUGACUGCGAGACCUACAAGUCGAGCA GGGUCGAAAGACGGACUUAGUGAUCCGGUGGUUCCGCAUGGAAGGGCCAUCGCUCAACGGAUAAAAGCUACCCCGGGGAU AACAGGCUUAUCUCCCCCAAGAGUUCACAUCGACGGGGAGGUUUGGCACCUCGAUGUCGGCUCAUCGCAUCCUGGGGCUG UAGUCGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGUACGCGAGCUGGGUUCAGAACGUCGUGAGACAGUUCGGU CCCUAUCCGUCGUGGGCGUAGGAAAUUUGAGAGGAGCUGUCCUUAGUACGAGAGGACCGGGAUGGACAUACCUCUGGUGU ACCAGUUGUCGUGCCAACGGCAUAGCUGGGUAGCUAUGUGUGGACGGGAUAAGUGCUGAAAGCAUCUAAGCAUGAAGCCC CCCUCAAGAUGAGAUUUCCCAACUUCGGUUAUAAGAUCCCUCAAAGAUGAUGAGGUUAAUAGGUUCGAGGUGGAAGCAUG GUGACAUGUGGAGCUGACGAAUACUAAUCGAUCGAAGACUUAAUCAA CP020619.1 16S ribosomal RNA Staphylococcus aureus JE2 0.5020583439999999 1 UUUAUGGAGAGUUUGAUCCUGGCUCAGGAUGAACGCUGGCGGCGUGCCUAAUACAUGCAAGUCGAGCGAACGGACGAGAA GCUUGCUUCUCUGAUGUUAGCGGCGGACGGGUGAGUAACACGUGGAUAACCUACCUAUAAGACUGGGAUAACUUCGGGAA ACCGGAGCUAAUACCGGAUAAUAUUUUGAACCGCAUGGUUCAAAAGUGAAAGACGGUCUUGCUGUCACUUAUAGAUGGAU CCGCGCUGCAUUAGCUAGUUGGUAAGGUAACGGCUUACCAAGGCAACGAUGCAUAGCCGACCUGAGAGGGUGAUCGGCCA CACUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUAGGGAAUCUUCCGCAAUGGGCGAAAGCCUGACGGA GCAACGCCGCGUGAGUGAUGAAGGUCUUCGGAUCGUAAAACUCUGUUAUUAGGGAAGAACAUAUGUGUAAGUAACUGUGC ACAUCUUGACGGUACCUAAUCAGAAAGCCACGGCUAACUACGUGCCAGCAGCCGCGGUAAUACGUAGGUGGCAAGCGUUA UCCGGAAUUAUUGGGCGUAAAGCGCGCGUAGGCGGUUUUUUAAGUCUGAUGUGAAAGCCCACGGCUCAACCGUGGAGGGU CAUUGGAAACUGGAAAACUUGAGUGCAGAAGAGGAAAGUGGAAUUCCAUGUGUAGCGGUGAAAUGCGCAGAGAUAUGGAG GAACACCAGUGGCGAAGGCGACUUUCUGGUCUGUAACUGACGCUGAUGUGCGAAAGCGUGGGGAUCAAACAGGAUUAGAU ACCCUGGUAGUCCACGCCGUAAACGAUGAGUGCUAAGUGUUAGGGGGUUUCCGCCCCUUAGUGCUGCAGCUAACGCAUUA AGCACUCCGCCUGGGGAGUACGACCGCAAGGUUGAAACUCAAAGGAAUUGACGGGGACCCGCACAAGCGGUGGAGCAUGU GGUUUAAUUCGAAGCAACGCGAAGAACCUUACCAAAUCUUGACAUCCUUUGACAACUCUAGAGAUAGAGCCUUCCCCUUC GGGGGACAAAGUGACAGGUGGUGCAUGGUUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCA ACCCUUAAGCUUAGUUGCCAUCAUUAAGUUGGGCACUCUAAGUUGACUGCCGGUGACAAACCGGAGGAAGGUGGGGAUGA CGUCAAAUCAUCAUGCCCCUUAUGAUUUGGGCUACACACGUGCUACAAUGGACAAUACAAAGGGCAGCGAAACCGCGAGG UCAAGCAAAUCCCAUAAAGUUGUUCUCAGUUCGGAUUGUAGUCUGCAACUCGACUACAUGAAGCUGGAAUCGCUAGUAAU CGUAGAUCAGCAUGCUACGGUGAAUACGUUCCCGGGUCUUGUACACACCGCCCGUCACACCACGAGAGUUUGUAACACCC GAAGCCGGUGGAGUAACCUUUUAGGAGCUAGCCGUCGAAGGUGGGACAAAUGAUUGGGGUGAAGUCGUAACAAGGUAGCC GUAUCGGAAGGUGCGGCUGGAUCACCUCCUUU CP020619.1 Small ribosomal subunit protein uS7 Staphylococcus aureus JE2 0.017826555 1 LEVO MPRKGSVPKRDVLPDPIHNSKLVTKLINKIMLDGKRGTAQRILYSAFDLVEQRSGRDALEVFEEAINNIMPVLEVKARRV GGSNYQVPVEVRPERRTTLGLRWLVNYARLRGEKTMEDRLANEILDAANNTGGAVKKREDTHKMAEANKAFAHYRW Q2FJ94 Large ribosomal subunit protein bL31B Staphylococcus aureus JE2 0.009737912 1 LEVO MKQGIHPEYHQVIFLDTTTNFKFLSGSTKTSSEMMEWEDGKEYPVIRLDISSDSHPFYTGRQKFAAADGRVERFNKKFGL KSNN Q2FF08 ZINC ION 6.5409e-05 4 ZN MAGNESIUM ION 2.4305e-05 421 MG N-FORMYLMETHIONINE 0.000177221 1 FME POTASSIUM ION 3.9098e-05 5 K Clincelin 0.000575114 1 A1I09 singleParticle particle 7.5

20 mM Tris-HCl, pH 7.5, 10 mM MgCl2, 50 mM NH4Cl, 0.1 mM EDTA, pH 8, 6 mM beta-mercaptoethanol

Quantifoil R2/2 COPPER 300 CARBON CONTINUOUS 2.0 GLOW DISCHARGE 20 ETHANE 100 277.15 FEI VITROBOT MARK IV

Blotting time 2.5 s Blot force 5 Waiting time 30 s.

FEI TALOS ARCTICA FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 0.4 1.8 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K2 SUMMIT (4k x 4k) COUNTING 7236 50.0 1 659304 RELION 4.0 PHASE FLIPPING AND AMPLITUDE CORRECTION 6TC3 C1 3.01 FSC 0.143 CUT-OFF RELION 4.0 63589 MAXIMUM LIKELIHOOD RELION 4.0 MAXIMUM LIKELIHOOD RELION 4.0 10 RELION 4.0 emd_52712.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 408 408 408 0 0 0 408 408 408 365.16 365.16 365.16 90.0 90.0 90.0 Z Y X -0.013350485 0.025827281 -0.00001543891 0.0013841724 0.895 0.895 0.895 0.003 AUTHOR ::::EMDATABANK.org::::EMD-52712:::: sharpened map used for final refinement 9I88 PDB experimental model RIGID BODY FIT REAL emd_52712_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 408 408 408 0 0 0 408 408 408 365.16 365.16 365.16 90.0 90.0 90.0 X Y Z -0.009528259 0.023876559 -0.000025607833 0.0012727831 0.895 0.895 0.895 AUTHOR ::::EMDATABANK.org::::EMD-52712:::: map used for model building emd_52712_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 408 408 408 0 0 0 408 408 408 365.16 365.16 365.16 90.0 90.0 90.0 X Y Z -0.036228165 0.0420569 -0.000022937627 0.003997205 0.895 0.895 0.895 AUTHOR ::::EMDATABANK.org::::EMD-52712:::: half-map used for resolution estimation and FSC calculation emd_52712_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 408 408 408 0 0 0 408 408 408 365.16 365.16 365.16 90.0 90.0 90.0 X Y Z -0.030810283 0.040977683 -0.000021999655 0.003928905 0.895 0.895 0.895 AUTHOR ::::EMDATABANK.org::::EMD-52712:::: half-map used for resolution estimation and FSC calculation