<emd emdb_id="EMD-5271" version="3.0.1.1" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
    <admin>
        <current_status>
            <code>REL</code>
            <processing_site>RCSB</processing_site>
        </current_status>
        <sites>
            <deposition>RCSB</deposition>
            <last_processing>RCSB</last_processing>
        </sites>
        <key_dates>
            <deposition>2011-04-04</deposition>
            <header_release>2011-06-23</header_release>
            <map_release>2011-08-16</map_release>
            <update>2011-11-16</update>
        </key_dates>
        <title>High resolution helical reconstruction of the bacterial p-type ATPase copper transporter CopA.</title>
        <authors_list>
            <author>Wu C</author>
            <author>Allen GS</author>
            <author>Cardozo T</author>
            <author>Stokes DL</author>
        </authors_list>
        <keywords>p-type ATPase, copper transporter, CopA, Adenosine Triphosphatases, Archaeal Proteins, Archaeoglobus fulgidus, Cation Transport Proteins, Cryoelectron Microscopy</keywords>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Allen GS</author>
                    <author order="2">Wu CC</author>
                    <author order="3">Cardozo T</author>
                    <author order="4">Stokes DL</author>
                    <title>The architecture of CopA from Archeaoglobus fulgidus studied by cryo-electron microscopy and computational docking.</title>
                    <journal>STRUCTURE</journal>
                    <volume>19</volume>
                    <first_page>1219</first_page>
                    <last_page>1232</last_page>
                    <year>2011</year>
                    <external_references type="PUBMED">21820315</external_references>
                    <external_references type="DOI">doi:10.1016/j.str.2011.05.014</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <pdb_list>
            <pdb_reference>
                <pdb_id>3j08</pdb_id>
                <relationship>
                    <in_frame>FULLOVERLAP</in_frame>
                </relationship>
            </pdb_reference>
        </pdb_list>
    </crossreferences>
    <sample>
        <name>deltaC-CopA in DMPC-DOPE lipids</name>
        <supramolecule_list>
            <sample_supramolecule supramolecule_id="1000">
                <name>deltaC-CopA in DMPC-DOPE lipids</name>
                <details>deltaC-CopA tubular crystals were grown with a 4-to-1 mixture of DMPC-DOPE at a protein concentration of 1 mg per mL and at a lipid-to-protein weight ratio of 0.4.  Dialysis was carried out for 5 days in 50 ul dialysis buttons at 30 degrees C against 500 mL of 50 mM MES, pH 6.1, 25 mM Na2SO4, 25 mM K2SO4, 200 uM BCDS, 10 mM MgSO4, and 2 mM beta-mercaptoethanol.  Stock solutions of lipid were made in dodecyl octaethylene glycol ether (C12E8) at 1 mg lipid per 2 mg detergent.</details>
                <number_unique_components>1</number_unique_components>
                <molecular_weight>
                    <theoretical units="MDa">0.077</theoretical>
                </molecular_weight>
            </sample_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <protein_or_peptide macromolecule_id="1">
                <name synonym="membrane protein">membrane protein</name>
                <natural_source database="NCBI">
                    <organism ncbi="2234">Archaeoglobus fulgidus</organism>
                    <cell>E. coli</cell>
                    <cellular_location>plasma membrane</cellular_location>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.077</theoretical>
                </molecular_weight>
                <number_of_copies>2</number_of_copies>
                <oligomeric_state>dimer</oligomeric_state>
                <recombinant_exp_flag>true</recombinant_exp_flag>
                <recombinant_expression database="NCBI">
                    <recombinant_organism>Escherichia coli strain LMG 1940</recombinant_organism>
                    <recombinant_plasmid>pBAD</recombinant_plasmid>
                </recombinant_expression>
                <sequence>
                    <external_references type="GO">GO:0006825</external_references>
                    <external_references type="INTERPRO">IPR006403</external_references>
                </sequence>
            </protein_or_peptide>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>helical</method>
            <aggregation_state>helicalArray</aggregation_state>
            <specimen_preparation_list>
                <helical_preparation preparation_id="1">
                    <concentration units="mg/mL">1</concentration>
                    <buffer>
                        <ph>6.1</ph>
                        <details>50 mM MES, pH 6.1, 25 mM Na2SO4, 25 mM K2SO4, 200 uM BCDS, 10 mM MgSO4, and 2 mM beta-mercaptoethanol.</details>
                    </buffer>
                    <grid>
                        <details>holey carbon grid</details>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <chamber_temperature units="K">77</chamber_temperature>
                        <instrument>HOMEMADE PLUNGER</instrument>
                        <details>Vitrification instrument: plunger</details>
                        <method>blot for 5 seconds before plunging</method>
                    </vitrification>
                    <details>dialysis buttons</details>
                </helical_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <helical_microscopy microscopy_id="1">
                    <microscope>FEI/PHILIPS CM200FEG</microscope>
                    <illumination_mode>SPOT SCAN</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">200</acceleration_voltage>
                    <nominal_cs units="mm">2</nominal_cs>
                    <nominal_defocus_min units="&#181;m">1.5</nominal_defocus_min>
                    <nominal_defocus_max units="&#181;m">2.5</nominal_defocus_max>
                    <nominal_magnification>50000.0</nominal_magnification>
                    <specimen_holder_model>GATAN LIQUID NITROGEN</specimen_holder_model>
                    <temperature>
                        <temperature_average units="K">100</temperature_average>
                    </temperature>
                    <image_recording_list>
                        <image_recording>
                            <film_or_detector_model category="FILM">KODAK SO-163 FILM</film_or_detector_model>
                            <digitization_details>
                                <scanner>ZEISS SCAI</scanner>
                                <sampling_interval units="&#181;m">14</sampling_interval>
                            </digitization_details>
                            <number_real_images>12</number_real_images>
                        </image_recording>
                    </image_recording_list>
                    <specimen_holder>CT3500</specimen_holder>
                </helical_microscopy>
            </microscopy_list>
            <helical_processing image_processing_id="1">
                <final_reconstruction>
                    <algorithm>OTHER</algorithm>
                    <resolution res_type="BY AUTHOR" units="&#8491;">10.0</resolution>
                    <resolution_method>OTHER</resolution_method>
                    <software_list>
                        <software>
                            <name>EMIP</name>
                        </software>
                    </software_list>
                </final_reconstruction>
                <ctf_correction>
                    <details>each tube-crystal</details>
                </ctf_correction>
            </helical_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="808">
        <file>emd_5271.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>50</col>
            <row>51</row>
            <sec>81</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>51</x>
            <y>50</y>
            <z>81</z>
        </spacing>
        <cell>
            <a units="&#8491;">100</a>
            <b units="&#8491;">102</b>
            <c units="&#8491;">162</c>
            <alpha units="deg">90</alpha>
            <beta units="deg">90</beta>
            <gamma units="deg">90</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-30.964200000000002</minimum>
            <maximum>199.592999999999989</maximum>
            <average>104.631</average>
            <std>38.0715</std>
        </statistics>
        <pixel_spacing>
            <x units="&#8491;">2</x>
            <y units="&#8491;">2</y>
            <z units="&#8491;">2</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>130.0</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <annotation_details>This is a cubic section encompassing the unit cell of a Fourier-Bessel reconstructed map of tubular vesicles - crystals of deltaC-CopA from Archaeoglobus fulgidus.</annotation_details>
        <details>::::EMDATABANK.org::::EMD-5271::::</details>
    </map>
</emd>