<emd emdb_id="EMD-5257" version="3.0.1.1" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
    <admin>
        <current_status>
            <code>REL</code>
            <processing_site>RCSB</processing_site>
        </current_status>
        <sites>
            <deposition>RCSB</deposition>
            <last_processing>RCSB</last_processing>
        </sites>
        <key_dates>
            <deposition>2011-01-21</deposition>
            <header_release>2011-05-05</header_release>
            <map_release>2011-11-09</map_release>
            <update>2012-03-19</update>
        </key_dates>
        <title>Phosphorylated smooth muscle heavy meromyosin shows an open conformation linked to activation</title>
        <authors_list>
            <author>Baumann BAJ</author>
            <author>Taylor D</author>
            <author>Huang Z</author>
            <author>Tama F</author>
            <author>Fagnant PM</author>
            <author>Trybus KM</author>
            <author>Taylor K</author>
        </authors_list>
        <keywords>smHMM,heavy meromyosin,S1,phosphorylation,smooth muscle,activation</keywords>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Baumann BA</author>
                    <author order="2">Taylor DW</author>
                    <author order="3">Huang Z</author>
                    <author order="4">Tama F</author>
                    <author order="5">Fagnant PM</author>
                    <author order="6">Trybus KM</author>
                    <author order="7">Taylor KA</author>
                    <title>Phosphorylated smooth muscle heavy meromyosin shows an open conformation linked to activation.</title>
                    <journal>J.MOL.BIOL.</journal>
                    <volume>415</volume>
                    <first_page>274</first_page>
                    <last_page>287</last_page>
                    <year>2012</year>
                    <external_references type="PUBMED">22079364</external_references>
                    <external_references type="DOI">doi:10.1016/j.jmb.2011.10.047</external_references>
                </journal_citation>
            </primary_citation>
            <secondary_citation>
                <journal_citation published="true">
                    <author order="1">Wendt T</author>
                    <author order="2">Taylor D</author>
                    <author order="3">Trybus KM</author>
                    <author order="4">Taylor K</author>
                    <title>Three-Dimensional image reconstruction of dephosphorylated smooth muscle heavy meromyosin reveals asymmetry in the interaction between myosin heads and placement of subfragment 2</title>
                    <journal>PNAS</journal>
                    <volume>98</volume>
                    <first_page>4361</first_page>
                    <last_page>4366</last_page>
                    <year>2001</year>
                    <external_references type="PUBMED">11287639</external_references>
                    <external_references type="DOI">doi:10.1073/pnas.071051098</external_references>
                </journal_citation>
            </secondary_citation>
            <secondary_citation>
                <journal_citation published="true">
                    <author order="1">Wendt T</author>
                    <author order="2">Taylor D</author>
                    <author order="3">Messier T</author>
                    <author order="4">Trybus KM</author>
                    <author order="5">Taylor KA</author>
                    <title>Visualization of head-head interactions in the inhibited state of smooth muscle myosin</title>
                    <journal>J.CELL BIOL.</journal>
                    <volume>147</volume>
                    <first_page>1385</first_page>
                    <last_page>1390</last_page>
                    <year>1999</year>
                    <external_references type="PUBMED">10613897</external_references>
                    <external_references type="DOI">doi:10.1083/jcb.147.7.1385</external_references>
                </journal_citation>
            </secondary_citation>
        </citation_list>
        <pdb_list>
            <pdb_reference>
                <pdb_id>3j04</pdb_id>
                <relationship>
                    <in_frame>FULLOVERLAP</in_frame>
                </relationship>
            </pdb_reference>
        </pdb_list>
    </crossreferences>
    <sample>
        <name>Heavy meromyosin subfragment of chicken gizzard smooth muscle myosin with the regulatory light chain in the phosphoryated state</name>
        <supramolecule_list>
            <sample_supramolecule supramolecule_id="1000">
                <name>Heavy meromyosin subfragment of chicken gizzard smooth muscle myosin with the regulatory light chain in the phosphoryated state</name>
                <details>Chicken gizzard smooth muscle heavy meromyosin was expressed, isolated and thiophosphorylated as per Wendt et al. 1999.</details>
                <number_unique_components>1</number_unique_components>
                <molecular_weight>
                    <theoretical units="MDa">0.35</theoretical>
                </molecular_weight>
            </sample_supramolecule>
            <organelle_or_cellular_component_supramolecule supramolecule_id="1">
                <name synonym="heavy meromyosin">heavy meromyosin</name>
                <number_of_copies>2</number_of_copies>
                <oligomeric_state>dimer</oligomeric_state>
                <recombinant_exp_flag>true</recombinant_exp_flag>
                <natural_source database="NCBI">
                    <organism ncbi="9031">Gallus gallus</organism>
                    <synonym_organism>Chicken</synonym_organism>
                    <tissue>smooth muscle</tissue>
                    <cell>Baculovirus</cell>
                    <cellular_location>sarcomere</cellular_location>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.350</theoretical>
                </molecular_weight>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="7108">Spodoptera frugiperda</recombinant_organism>
                    <recombinant_plasmid>PVL1392</recombinant_plasmid>
                </recombinant_expression>
            </organelle_or_cellular_component_supramolecule>
        </supramolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>electronCrystallography</method>
            <aggregation_state>twoDArray</aggregation_state>
            <specimen_preparation_list>
                <crystallography_preparation preparation_id="1">
                    <concentration units="mg/mL">0.5</concentration>
                    <buffer>
                        <ph>7.8</ph>
                        <details>1 mM Mg, 20 mM phosphate, 1 mM ATP, 1 mM EGTA, 7-10% polyethylene glycol 6000, 90-120 mM NaCl</details>
                    </buffer>
                    <grid>
                        <details>200 mesh carbon coated grid</details>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <chamber_humidity units="percentage">90</chamber_humidity>
                        <instrument>HOMEMADE PLUNGER</instrument>
                        <details>Vitrification instrument: homemade solenoid activated plunge freezer. Carried out in cold room at 4 degrees C</details>
                        <method>Blot for 4 sec before plunging</method>
                    </vitrification>
                    <details>crystals grown on a lipid monolayer</details>
                    <crystal_formation>
                        <details>crystals grown on a lipid monolayer</details>
                    </crystal_formation>
                </crystallography_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <crystallography_microscopy microscopy_id="1">
                    <microscope>FEI/PHILIPS CM300FEG/T</microscope>
                    <illumination_mode>SPOT SCAN</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>TUNGSTEN HAIRPIN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <nominal_cs units="mm">2</nominal_cs>
                    <nominal_defocus_min units="&#181;m">4.0</nominal_defocus_min>
                    <nominal_magnification>24000.0</nominal_magnification>
                    <specimen_holder_model>GATAN LIQUID NITROGEN</specimen_holder_model>
                    <temperature>
                        <temperature_average units="K">90</temperature_average>
                    </temperature>
                    <alignment_procedure>
                        <legacy>
                            <astigmatism>objective lens astigmatism corrected at 250 times magnification</astigmatism>
                        </legacy>
                    </alignment_procedure>
                    <date>2004-10-10</date>
                    <image_recording_list>
                        <image_recording>
                            <film_or_detector_model category="FILM">KODAK SO-163 FILM</film_or_detector_model>
                            <digitization_details>
                                <scanner>ZEISS SCAI</scanner>
                                <sampling_interval units="&#181;m">7</sampling_interval>
                            </digitization_details>
                            <number_real_images>85</number_real_images>
                            <average_electron_dose_per_image units="e/&#8491;^2">40</average_electron_dose_per_image>
                            <bits_per_pixel>16.</bits_per_pixel>
                        </image_recording>
                    </image_recording_list>
                    <specimen_holder>eucentric</specimen_holder>
                    <tilt_angle_min>-60</tilt_angle_min>
                    <tilt_angle_max>60</tilt_angle_max>
                    <tilt_series>
                        <axis1>
                            <min_angle units="deg">-60</min_angle>
                            <max_angle units="deg">60</max_angle>
                        </axis1>
                    </tilt_series>
                </crystallography_microscopy>
            </microscopy_list>
            <crystallography_processing image_processing_id="1">
                <final_reconstruction>
                    <algorithm>OTHER</algorithm>
                    <resolution res_type="BY AUTHOR" units="&#8491;">20.0</resolution>
                    <software_list>
                        <software>
                            <name>CCP4</name>
                        </software>
                    </software_list>
                    <details>A total of 85 unique averaged structure factors were obtained and had an average phase residual of 17.9 degrees with a resolution to approx 2.1 nm</details>
                </final_reconstruction>
                <crystal_parameters>
                    <unit_cell>
                        <a units="&#8491;">219.3</a>
                        <b units="&#8491;">174.8</b>
                        <c units="&#8491;">94.4</c>
                        <gamma units="deg">94.4</gamma>
                        <alpha units="deg">90</alpha>
                        <beta units="deg">90</beta>
                    </unit_cell>
                    <plane_group>P 2</plane_group>
                </crystal_parameters>
                <ctf_correction>
                    <details>determined using ICE and corrected with CTFAPPPLY</details>
                </ctf_correction>
            </crystallography_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="1873">
        <file>emd_5257.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>169</col>
            <row>81</row>
            <sec>35</sec>
        </dimensions>
        <origin>
            <col>-84</col>
            <row>-40</row>
            <sec>-17</sec>
        </origin>
        <spacing>
            <x>175</x>
            <y>169</y>
            <z>35</z>
        </spacing>
        <cell>
            <a units="&#8491;">419.0693</a>
            <b units="&#8491;">428.995</b>
            <c units="&#8491;">85.9985</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-4.67003298</minimum>
            <maximum>4.40441799</maximum>
            <average>-0.03437874</average>
            <std>1.01000309</std>
        </statistics>
        <pixel_spacing>
            <x units="&#8491;">2.4797</x>
            <y units="&#8491;">2.4514</y>
            <z units="&#8491;">2.4571</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.609</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <annotation_details>This is an image of the 2D crystal looking from the top down</annotation_details>
        <details>::::EMDATABANK.org::::EMD-5257::::</details>
    </map>
    <interpretation>
        <modelling_list>
            <modelling>
                <initial_model>
                    <access_code>1BR1</access_code>
                </initial_model>
                <refinement_protocol>RIGID BODY FIT</refinement_protocol>
                <software_list>
                    <software>
                        <name>NMFF</name>
                    </software>
                </software_list>
                <details>Protocol: rigid body. The model was roughly fit into the density map using O the refined using NMFF. The entire structure was then minimized using minCHARMM.pl</details>
                <refinement_space>REAL</refinement_space>
            </modelling>
            <modelling>
                <initial_model>
                    <access_code>2MYS</access_code>
                </initial_model>
                <refinement_protocol>RIGID BODY FIT</refinement_protocol>
                <software_list>
                    <software>
                        <name>NMFF</name>
                    </software>
                </software_list>
                <details>Protocol: rigid body. The model was roughly fit into the density map using O the refined using NMFF. The entire structure was then minimized using minCHARMM.pl</details>
                <refinement_space>REAL</refinement_space>
            </modelling>
        </modelling_list>
    </interpretation>
</emd>