2025-07-16 REL PDBe INITIAL_RELEASE REPOSITORY DATABASE_REFERENCES citation citation_author em_admin _citation.journal_volume _citation.page_first _citation.page_last _citation.pdbx_database_id_PubMed _citation.title _citation_author.identifier_ORCID _citation_author.name _em_admin.last_update PDBe PDBe 2024-12-02 2025-07-09 2025-07-09 2025-07-16 Oncode Institute Netherlands Structure of Zincore (SEPHS1:QRICH1) binding to ZFP91 on DNA Borza R Perrakis A Zincore Complex, Transcriptional regulator complex, SEPHS1, Selenide, water dikinase 1, selenophosphate synthetase 1, QRICH1, Zinc finger protein, ZFP91, Transcription factor, STRUCTURAL PROTEIN Bianchi D Borza R De Zan E Huelsz-Prince G Gregoricchio S Dekker M Fish A Mazouzi A Kroese LJ Linder S Hernandez-Quiles M Vermeulen M Celie PHN Krimpenfort P Song JY Zwart W Wessels L Nijman SMB Perrakis A Brummelkamp TR Zincore, an atypical coregulator, binds zinc finger transcription factors to control gene expression. Science US 389 eadv2861 eadv2861 2025 40608935 doi:10.1126/science.adv2861 1095-9203 0038 SCIEAS 9hjt FULLOVERLAP Zincore Zincore 0 1 3 4 5 2 Homo sapiens E3 ubiquitin-protein ligase ZFP91 Homo sapiens 0.063557219 1 Spodoptera frugiperda LEVO MPGETEEPRPPEQQDQEGGEAAKAAPEEPQQRPPEAVAAAPAGTTSSRVLRGGRDRGRAAAAAAAAAVSRRRKAEYPRRR RSSPSARPPDVPGQQPQAAKSPSPVQGKKSPRLLCIEKVTTDKDPKEEKEEEDDSALPQEVSIAASRPSRGWRSSRTSVS RHRDTENTRSSRSKTGSLQLICKSEPNTDQLDYDVGEEHQSPGGISSEEEEEEEEEMLISEEEIPFKDDPRDETYKPHLE RETPKPRRKSGKVKEEKEKKEIKVEVEVEVKEEENEIREDEEPPRKRGRRRKDDKSPRLPKRRKKPPIQYVRCEMEGCGT VLAHPRYLQHHIKYQHLLKKKYVCPHPSCGRLFRLQKQLLRHAKHHTDQRDYICEYCARAFKSSHNLAVHRMIHTGEKPL QCEICGFTCRQKASLNWHMKKHDADSFYQFSCNICGKKFEKKDSVVAHKAKSHPEVLIAEALAANAGALITSTDILGTNP ESLTQPSDGQGLPLLPEPLGNSTSGECLLLEAEGMSKSYCSGTERVSLMADGKIFVGSGSSGGTEGLVMNSDILGATTEV LIEDSDSAGP Q96JP5 2.3.2.27 Selenide, water dikinase 1 Homo sapiens 0.042953461 2 Spodoptera frugiperda LEVO MSTRESFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENHFQEDEQFLGAVMPRLGIGMDTCVIPLRHGGL SLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLMLLGVSNKMTDRERDKVMPLIIQGFKDAAEEAGTSVT GGQTVLNPWIVLGGVATTVCQPNEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQWLDIPEKWNKIKLVVTQEDVELAYQEA MMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKMAAVSKACGNMFGLMHGTCPET SGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQVATQNVNPTPGATS P49903 2.7.9.3 Transcriptional regulator QRICH1 Homo sapiens 0.086507156 2 Spodoptera frugiperda LEVO MNNSLENTISFEEYIRVKARSVPQHRMKEFLDSLASKGPEALQEFQQTATTTMVYQQGGNCIYTDSTEVAGSLLELACPV TTSVQPQTQQEQQIQVQQPQQVQVQVQVQQSPQQVSAQLSPQLTVHQPTEQPIQVQVQIQGQAPQSAAPSIQTPSLQSPS PSQLQAAQIQVQHVQAAQQIQAAEIPEEHIPHQQIQAQLVAGQSLAGGQQIQIQTVGALSPPPSQQGSPREGERRVGTAS VLQPVKKRKVDMPITVSYAISGQPVATVLAIPQGQQQSYVSLRPDLLTVDSAHLYSATGTITSPTGETWTIPVYSAQPRG DPQQQSITHIAIPQEAYNAVHVSGSPTALAAVKLEDDKEKMVGTTSVVKNSHEEVVQTLANSLFPAQFMNGNIHIPVAVQ AVAGTYQNTAQTVHIWDPQQQPQQQTPQEQTPPPQQQQQQLQVTCSAQTVQVAEVEPQSQPQPSPELLLPNSLKPEEGLE VWKNWAQTKNAELEKDAQNRLAPIGRRQLLRFQEDLISSAVAELNYGLCLMTREARNGEGEPYDPDVLYYIFLCIQKYLF ENGRVDDIFSDLYYVRFTEWLHEVLKDVQPRVTPLGYVLPSHVTEEMLWECKQLGAHSPSTLLTTLMFFNTKYFLLKTVD QHMKLAFSKVLRQTKKNPSNPKDKSTSIRYLKALGIHQTGQKVTDDMYAEQTENPENPLRCPIKLYDFYLFKCPQSVKGR NDTFYLTPEPVVAPNSPIWYSVQPISREQMGQMLTRILVIREIQEAIAVANASTMH Q2TAL8 DNA (31-MER) Homo sapiens 0.009314979 1 (DG)(DC)(DG)(DA)(DC)(DC)(DT)(DG)(DC)(DC)(DC)(DC)(DT)(DT)(DT)(DA)(DA)(DG)(DA)(DG) (DC)(DA)(DC)(DC)(DC)(DC)(DC)(DC)(DT)(DC)(DC) DNA DNA (31-MER) Homo sapiens 0.009755241999999999 1 (DG)(DG)(DA)(DG)(DG)(DG)(DG)(DG)(DG)(DT)(DG)(DC)(DT)(DC)(DT)(DT)(DA)(DA)(DA)(DG) (DG)(DG)(DG)(DC)(DA)(DG)(DG)(DT)(DC)(DG)(DC) DNA ZINC ION 6.5409e-05 5 ZN singleParticle particle 8.0 ETHANE TFS KRIOS SPOT SCAN BRIGHT FIELD FIELD EMISSION GUN 300 2.7 1.0 2.0 130000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K3 BIOQUANTUM (6k x 4k) 1 7542 50.0 1
Multiple particle selections
 cryoSPARC PHASE FLIPPING AND AMPLITUDE CORRECTION Alphafold 3.26 FSC 0.143 CUT-OFF cryoSPARC 42621 RANDOM ASSIGNMENT cryoSPARC RANDOM ASSIGNMENT cryoSPARC emd_52226.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 440 440 440 0 0 0 440 440 440 288.64 288.64 288.64 90.0 90.0 90.0 X Y Z -0.09515174 0.2591774 -0.000020048836 0.0073188846 0.656 0.656 0.656 0.055 AUTHOR Main Map AlphaFold in silico model REAL emd_52226_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 440 440 440 0 0 0 440 440 440 288.64 288.64 288.64 90.0 90.0 90.0 X Y Z -1.3556812 1.5705014 0.00016965577 0.15807194 0.656 0.656 0.656 AUTHOR Map Half B emd_52226_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 440 440 440 0 0 0 440 440 440 288.64 288.64 288.64 90.0 90.0 90.0 X Y Z -1.6153603 1.4048635 0.00017803881 0.15677738 0.656 0.656 0.656 AUTHOR Map Half A