2025-02-26 REL PDBe PDBe PDBe 2024-11-13 2025-02-26 2025-02-26 2025-02-26 Not funded Structure of the Xenorceptide A2-bound E. coli BAM complex (BamABCDE) Jakob RP Modaresi SM Maier T Hiller S Beta-Barrel, outer membrane, protein insertion, protein folding, protein maturation, antibiotic, natural product, cyclized peptide, MEMBRANE PROTEIN Modaresi SM Sugiyama R Tram NDT Jakob RP Phan CS Saei AA Morishita Y Muhlethaler T Lim J Ritz D Long PSY Lehner PA Lim ZH Degen M Yao Z Maier T Hou Y Lee JY Xu J Yeat AYJ Koh KTS Goh WY Ling SYH Chua PWL Yamazaki M Ee PLR Hiller S Morinaka BI Antibiotics that Kill Gram-negative Bacteria by Restructuring the Outer Membrane Protein BamA Biorxiv US 2024 doi:10.1101/2024.12.16.628070 2692-8205 9he1 FULLOVERLAP BAM complex BAM complex 0 1 2 3 4 5 6
five subunits: BamA, BamB, BamC, BamD, BamE
Escherichia coli K-12 Outer membrane protein assembly factor BamA Escherichia coli K-12 0.090643383 1 Escherichia coli BL21(DE3) LEVO MAMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLRD GDTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLPR NRVDLKLVFQEGVSAEIQQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNI DSTQVSLTPDKKGIYVTVNITEGDQYKLSGVEVSGNLAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYP RVQSMPEINDADKTVKLRVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVDQGKERLNRLGFFETVDT DTQRVPGSPDQVDVVYKVKERNTGSFNFGIGYGTESGVSFQAGVQQDNWLGTGYAVGINGTKNDYQTYAELSVTNPYFTV DGVSLGGRLFYNDFQADDADLSDYTNKSYGTDVTLGFPINEYNSLRAGLGYVHNSLSNMQPQVAMWRYLYSMGEHPSTSD QDNSFKTDDFTFNYGWTYNKLDRGYFPTDGSRVNLTGKVTIPGSDNEYYKVTLDTATYVPIDDDHKWVVLGRTRWGYGDG LGGKEMPFYENFYAGGSSTVRGFQSNTIGPKAVYFPHQASNYDPDYDYECATQDGAKDLCKSDDAVGGNAMAVASLEFIT PTPFISDKYANSVRTSFFWDMGTVWDTNWDSSQYSGYPDYSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAE QFQFNIGKTW P0A940 Outer membrane protein assembly factor BamB Escherichia coli K-12 0.042961086 1 Escherichia coli BL21(DE3) LEVO MQLRKLLLPGLLSVTLLSGCSLFNSEEDVVKMSPLPTVENQFTPTTAWSTSVGSGIGNFYSNLHPALADNVVYAADRAGL VKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDG LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTE IDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQS DLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSITRWSHPQFEK P77774 Outer membrane protein assembly factor BamC Escherichia coli K-12 0.036875277 1 Escherichia coli BL21(DE3) LEVO MAYSVQKSRLAKVAGVSLVLLLAACSSDSRYKRQVSGDEAYLEAAPLAELHAPAGMILPVTSGDYAIPVTNGSGAVGKAL DIRPPAQPLALVSGARTQFTGDTASLLVENGRGNTLWPQVVSVLQAKNYTITQRDDAGQTLTTDWVQWNRLDEDEQYRGR YQISVKPQGYQQAVTVKLLNLEQAGKPVADAASMQRYSTEMMNVISAGLDKSATDAANAAQNRASTTMDVQSAADDTGLP MLVVRGPFNVVWQRLPAALEKVGMKVTDSTRSQGNMAVTYKPLSDSDWQELGASDPGLASGDYKLQVGDLDNRSSLQFID PKGHTLTQSQNDALVAVFQAAFSK P0A903 Outer membrane protein assembly factor BamD Escherichia coli K-12 0.027858349999999997 1 Escherichia coli BL21(DE3) LEVO MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA NSSNT P0AC02 Outer membrane protein assembly factor BamE Escherichia coli K-12 0.013382195 1 Escherichia coli BL21(DE3) LEVO MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQ PGHEGVTQQTLTLTFNSSGVLTNIDNKPALSGNKLHHHHHH P0A937 RSAM-modified RiPP, XyeA family synthetic construct 0.001500701 1 LEVO WVNAFARWSKSF A0A1Q4P361 singleParticle particle 0.8 7.0
25 mM NaPi, 100 mM NaCl, pH 7.0
 Quantifoil Active R2/1 GOLD 200 ETHANE 95 289 FEI VITROBOT MARK IV
3.5uL sample, blot time 3sec, Blotforce 1, Blot total 1,.
MSP1D1 nanodiscs with DMPC 14:0 lipids
 TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 0.6 2.0 165000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GIF Bioquantum 10 FEI FALCON IV (4k x 4k) 4096 4096 40.0 1 7NRI 3.0 FSC 0.143 CUT-OFF cryoSPARC 93541 MAXIMUM LIKELIHOOD cryoSPARC MAXIMUM LIKELIHOOD cryoSPARC cryoSPARC emd_52074.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 291.456 291.456 291.456 90.0 90.0 90.0 X Y Z -0.34186864 0.5390819 -0.0003386251 0.009822037 0.759 0.759 0.759 0.085 AUTHOR AB INITIO MODEL emd_52074_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 291.456 291.456 291.456 90.0 90.0 90.0 X Y Z -0.791052 0.67561 0.00023607677 0.08755945 0.759 0.759 0.759 AUTHOR emd_52074_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 291.456 291.456 291.456 90.0 90.0 90.0 X Y Z -0.72329575 0.7662013 0.00023661659 0.08766342 0.759 0.759 0.759 AUTHOR