2025-02-19 REL PDBe PDBe PDBe 2024-11-11 2024-12-25 2024-12-25 2025-02-19 Max Planck Society Germany European Research Council (ERC) 101054823 European Union European Molecular Biology Organization (EMBO) ALTF 33-2021 European Union Cryo-tomogram of Dictyostelium discoideum cell - hyperosmotic stress condition (+0.4 M sorbitol), related to Figure 1b Hoffmann PC Kim H Obarska-Kosinska A Kreysing JP Andino-Frydman E Cruz-Leon S Margiotta E Cernikova L Kosinski J Turonova B Hummer G Beck M in situ tomogram, nuclear pore complex, hyperosmotic stress, NUCLEAR PROTEIN Hoffmann PC Kim H Obarska-Kosinska A Kreysing JP Andino-Frydman E Cruz-Leon S Margiotta E Cernikova L Kosinski J Turonova B Hummer G Beck M Nuclear pore permeability and fluid flow are modulated by its dilation state. Mol.Cell US 85 537 554.e11 2025 39729993 doi:10.1016/j.molcel.2024.11.038 1097-2765 2168 MOCEFL Cryo-tomogram of cryo-FIB milled D. discoideum cell under hyperosmotic stress Cryo-tomogram of cryo-FIB milled D. discoideum cell under hyperosmotic stress 0 Dictyostelium discoideum AX2 tomography cell 7.2 ETHANE
Hyperosmotic stress in HL5 + 0.4M sorbitol applied for approx. 1 min prior to plunge freezing
OTHER OTHER 30 0.03 3600 91 5000 150
for details please see material and methods section of the paper. The value given for _em_focused_ion_beam.instrument is TFS Aquilos2 cryo-FIB/SEM. This is not in a list of allowed values {'OTHER', 'DB235'} so OTHER is written into the XML file.
 TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.5 5.0 GATAN K3 BIOQUANTUM (6k x 4k) 2.3 1
alignment with patch-tracking and reconstruction in etomo, bin4 backprojection with SIRT-like filtering
59 emd_52054.map.gz 1 IMAGE STORED AS SIGNED BYTE 1016 1440 271 97 -98 -115 1016 1440 271 8843.265 12533.761 2358.7842 90.0 90.0 90.0 X Y Z -128.0 127.0 9.64012 22.839445000000001 8.704 8.704 8.704 AUTHOR cryo-tomogram D.discoideum - hyper OS, tomogram 029