2025-08-06 REL PDBe INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY PDBe PDBe 2024-10-31 2025-08-06 2025-08-06 2025-08-06 Ministerio de Ciencia e Innovacion (MCIN) PID2021-122705OB-I00 Spain Schedlbauer A Han X van Bakel W Kaminishi T Ochoa-Lizarralde B Iturrioz I Capuni R Parry R Zegarra R Gil-Carton D Lopez-Alonso JP Barragan Sanz K Brandi L Gualerzi CO Fucini P Connell SR Antibiotic, initiation factor, GE81112, 30S, RIBOSOME Schedlbauer A Han X van Bakel W Kaminishi T Ochoa-Lizarralde B Iturrioz I Capuni R Parry R Zegarra R Gil-Carton D Lopez-Alonso JP Barragan Sanz K Brandi L Gualerzi CO Fucini P Connell SR bioRxiv US 2024 39386670 doi:10.1101/2024.09.26.614503 2692-8205 9h9j FULLOVERLAP EMDB EMD-51966 associated EM volume

Complex 2 (BODY) 30S-IF1-IF3-tRNA-GE81112

Complex 2 (BODY): 30S-IF1-IF3-tRNA-GE81112 Complex 2 (BODY): 30S-IF1-IF3-tRNA-GE81112 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 Escherichia coli 16S RNA (1078-MER) Escherichia coli 0.49952824999999995 1 AAAUUGAAGAGUUUGAUCAUGGCUCAGAUUGAACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAACGGUAACAGGAAGA AGCUUGCUUCUUUGCUGACGAGUGGCGGACGGGUGAGUAAUGUCUGGGAAACUGCCUGAUGGAGGGGGAUAACUACUGGA AACGGUAGCUAAUACCGCAUAACGUCGCAAGACCAAAGAGGGGGACCUUCGGGCCUCUUGCCAUCGGAUGUGCCCAGAUG GGAUUAGCUAGUAGGUGGGGUAACGGCUCACCUAGGCGACGAUCCCUAGCUGGUCUGAGAGGAUGACCAGCCACACUGGA ACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGCAAGCCUGAUGCAGCCAUGC CGCGUGUAUGAAGAAGGCCUUCGGGUUGUAAAGUACUUUCAGCGGGGAGGAAGGGAGUAAAGUUAAUACCUUUGCUCAUU GACGUUACCCGCAGAAGAAGCACCGGCUAACUCCG(PSU)GCCAGCAGCC(G7M)CGGUAAUACGGAGGGUGCAAGCGUU AAUCGGAAUUACUGGGCGUAAAGCGCACGCAGGCGGUUUGUUAAGUCAGAUGUGAAAUCCCCGGGCUCAACCUGGGAACU GCAUCUGAUACUGGCAAGCUUGAGUCUCGUAGAGGGGGGUAGAAUUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGGA GGAAUACCGGUGGCGAAGGCGGCCCCCUGGACGAAGACUGACGCUCAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGA UACCCUGGUAGUCCACGCCGUAAACGAUGUCGACUUGGAGGUUGUGCCCUUGAGGCGUGGCUUCCGGAGCUAACGCGUUA AGUCGACCGCCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGU GGUUUAAUUCGAU(2MG)(5MC)AACGCGAAGAACCUUACCUGGUCUUGACAUCCACGGAAGUUUUCAGAGAUGAGAAUG UGCCUUCGGGAACCGUGAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUUGUGAAAUGUUGGGUUAAGUCCCGCAACG AGCGCAACCCUUAUCCUUUGUUGCCAGCGGUCCGGCCGGGAACUCAAAGGAGACUGCCAGUGAUAAACUGGAGGAAGGUG GGGAUGACGUCAAGUCAUCAUG(2MG)CCCUUACGACCAGGGCUACACACGUGCUACAAUGGCGCAUACAAAGAGAAGCG ACCUCGCGAGAGCAAGCGGACCUCAUAAAGUGCGUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUGAAGUCGGAA UCGCUAGUAAUCGUGGAUCAGAAUGCCACGGUGAAUACGUUCCCGGCCUUGUACACACCG(4OC)CCGU(5MC)ACACCA UGGGAGUGGGUUGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAA GUCG(UR3)AACAAGGUAACCGUAGG(2MG)G(MA6)(MA6)CCUGCGGUUGGAUCACCUCCUUA Small ribosomal subunit protein uS4 Escherichia coli 0.023514199 1 Escherichia coli LEVO MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAA RLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALE LAEQREKPTWLEVDAGKMEGTFKRKPERSDLSADINEHLIVELYSK P0A7V8 Small ribosomal subunit protein uS5 Escherichia coli 0.017629398 1 Escherichia coli LEVO MAHIEKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVALNNGT LQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKS VEEILGK P0A7W1 Small ribosomal subunit protein bS6, fully modified isoform Escherichia coli 0.015727512 1 Escherichia coli LEVO MRHYEIVFMVHPDQSEQVPGMIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFRF NDAVIRSMVMRTKHAVTEASPMVKAKDERRERRDDFANETADDAEAGDSEEEEEE P02358 Small ribosomal subunit protein uS8 Escherichia coli 0.014146557 1 Escherichia coli LEVO MSMQDPIADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEGDTKPELELTLKYFQGKAVVESIQRVSR PGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGGEIICYVA P0A7W7 Small ribosomal subunit protein uS11 Escherichia coli 0.013870974999999999 1 Escherichia coli LEVO MAKAPIRARKRVRKQVSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIK NLEVMVKGPGPGRESTIRALNAAGFRITNITDVTPIPHNGCRPPKKRRV P0A7R9 Small ribosomal subunit protein uS12 Escherichia coli 0.013768156999999998 1 Escherichia coli LEVO MATVNQLVRKPRARKVAKSNVPALEACPQKRGVCTRVYTTTPKKPNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEHSVI LIRGGRVKDLPGVRYHTVRGALDCSGVKDRKQARSKYGVKRPKA P0A7S3 Small ribosomal subunit protein uS15 Escherichia coli 0.010290816 1 Escherichia coli LEVO MSLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTQ LIERLGLRR P0ADZ4 Small ribosomal subunit protein bS16 Escherichia coli 0.009207571999999999 1 Escherichia coli LEVO MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVNK AA P0A7T3 Small ribosomal subunit protein uS17 Escherichia coli 0.009724491 1 Escherichia coli LEVO MTDKIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVE KAVL P0AG63 Small ribosomal subunit protein bS18 Escherichia coli 0.009005471999999999 1 Escherichia coli LEVO MARYFRRRKFCRFTAEGVQEIDYKDIATLKNYITESGKIVPSRITGTRAKYQRQLARAIKRARYLSLLPYTDRHQ P0A7T7 Small ribosomal subunit protein bS20 Escherichia coli 0.009708464 1 Escherichia coli LEVO MANIKSAKKRAIQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAAQKAFNEMQPIVDRQAAKGLIHKNKAARHKANLT AQINKLA P0A7U7 Small ribosomal subunit protein bS21 Escherichia coli 0.008524039 1 Escherichia coli LEVO MPVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY P68679 Translation initiation factor IF-1 Escherichia coli 0.00826259 1 Escherichia coli LEVO MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR P69222 Translation initiation factor IF-3 Escherichia coli 0.020600993999999997 1 Escherichia coli LEVO MKGGKRVQTARPNRINGEIRAQEVRLTGLEGEQLGIVSLREALEKAEEAGVDLVEISPNAEPPVCRIMDYGKFLYEKSKS SKEQKKKQKVIQVKEIKFRPGTDEGDYQVKLRSLIRFLEEGDKAKITLRFRGREMAHQQIGMEVLNRVKDDLQELAVVES FPTKIEGRQMIMVLAPKKKQ P0A707 (2S,3S)-2-[[(2S)-2-[[(2S,4S)-5-aminocarbonyloxy-4-oxidanyl-2-[[(2S,3R)-3-oxidanylpiperidin-2-yl]carbonylamino]pentanoyl]amino]-3-(1H-imidazol-4-yl)propanoyl]amino]-3-(2-chloranyl-1H-imidazol-4-yl)-3-oxidanyl-propanoic acid 0.0006440339999999999 1 A1IC4 MAGNESIUM ION 2.4305e-05 91 MG POTASSIUM ION 3.9098e-05 4 K singleParticle particle 7.7 Quantifoil R2/2 GLOW DISCHARGE ETHANE TFS KRIOS SPOT SCAN BRIGHT FIELD FIELD EMISSION GUN 300 0.5 3.25 FEI FALCON III (4k x 4k) 44.08 1 CTFFIND RELION PHASE FLIPPING AND AMPLITUDE CORRECTION 3.2 FSC 0.143 CUT-OFF RELION 34701 RANDOM ASSIGNMENT RELION MAXIMUM LIKELIHOOD RELION RELION RIGID BODY FIT emd_51966_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 427.39203 427.39203 427.39203 90.0 90.0 90.0 X Y Z -0.0026713389 1.9565912 0.0012966584 0.026628807 1.113 1.113 1.113 AUTHOR ::::EMDATABANK.org::::EMD-51966:::: Complex 2 (BODY): 30S-IF1-IF3-tRNA-GE81112 sharpened emd_51966_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 427.39203 427.39203 427.39203 90.0 90.0 90.0 X Y Z -0.036179055 0.12340386 0.000042044307 0.004743416 1.113 1.113 1.113 AUTHOR ::::EMDATABANK.org::::EMD-51966:::: Complex 2: 30S-IF1-IF3-tRNA-GE81112 concensus map before multibody refinement emd_51966_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 427.39203 427.39203 427.39203 90.0 90.0 90.0 X Y Z -0.06727283 0.15755178 -0.00022814526 0.00850152 1.113 1.113 1.113 AUTHOR ::::EMDATABANK.org::::EMD-51966:::: Complex 2 (BODY): 30S-IF1-IF3-tRNA-GE81112 half map emd_51966_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 427.39203 427.39203 427.39203 90.0 90.0 90.0 X Y Z -0.07191156 0.16020839 -0.00022890104 0.008664974 1.113 1.113 1.113 AUTHOR ::::EMDATABANK.org::::EMD-51966:::: Complex 2 (BODY): 30S-IF1-IF3-tRNA-GE81112 half map