2025-06-25 REL PDBe INITIAL_RELEASE REPOSITORY DATABASE_REFERENCES citation em_admin _citation.pdbx_database_id_DOI _citation.title _citation.year _em_admin.last_update DATABASE_REFERENCES citation citation_author em_admin _citation.country _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_volume _citation.pdbx_database_id_PubMed _citation.title _citation_author.identifier_ORCID _citation_author.name _em_admin.last_update PDBe PDBe 2024-10-28 2024-12-04 2024-12-04 2025-06-25 Novo Nordisk Foundation NNF21OC0070452 Denmark Small circular RNA dimer - Class 1 McRae EK Kristoffersen EL Holliger P Andersen ES small RNA circles, dimer, RNA crossover, RNA Kristoffersen EL McRae EKS Sorensen NR Holliger P Andersen ES Roles of dimeric intermediates in RNA-catalyzed rolling circle synthesis. Nucleic Acids Res. UK 53 2025 40521664 doi:10.1093/nar/gkaf057 1362-4962 0389 NARHAD 9h82 FULLOVERLAP Dimer intermediate class 1 composed of 1 circular RNA and a complimentary RNA Dimer intermediate class 1 composed of 1 circular RNA and a complimentary RNA 0 1 2
Dimer prepared by annealing
synthetic construct RNA (5'-R(P*AP*UP*CP*UP*UP*CP*UP*UP*CP*GP*AP*UP*UP*UP*CP*UP*UP*CP*CP*AP*UP*C)-3') synthetic construct 0.011191466
Circular RNA
1 AUCUUCUUCGAUUUCUUCCAGUUCUUCGCGUUCUUC RNA (36-MER) synthetic construct 0.011817235 1 UGGAAGAAAUCGAAGAAGAUGAAGAACGCGAAGAAC singleParticle particle 7.5 ETHANE 90 10 LEICA EM GP TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 50.0 2.7 0.8 1.8 130000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GIF Bioquantum 20 GATAN K3 BIOQUANTUM (6k x 4k) 2 6820 1.5 60.0 1 668921 cryoSPARC 4.5.3 PHASE FLIPPING AND AMPLITUDE CORRECTION 1 BACK PROJECTION 7.29 FSC 0.143 CUT-OFF cryoSPARC 4.5.3 NU-refinement 48117 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD 2 50000.0 cryoSPARC 4.5.3 emd_51918.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 128 128 128 0 0 0 128 128 128 331.52 331.52 331.52 90.0 90.0 90.0 X Y Z -0.2582547 1.2408605 -0.00019543947 0.022956375 2.59 2.59 2.59 0.285 AUTHOR Unsharpened map OTHER REAL 413.0 emd_51918_msk_1.map emd_51918_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 128 128 128 0 0 0 128 128 128 331.52 331.52 331.52 90.0 90.0 90.0 X Y Z -0.3355422 1.2912264 0.0003653083 0.024809329 2.59 2.59 2.59 AUTHOR emd_51918_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 128 128 128 0 0 0 128 128 128 331.52 331.52 331.52 90.0 90.0 90.0 X Y Z -0.28692663 1.3017174 0.00038580835 0.024833692 2.59 2.59 2.59 AUTHOR