REL RCSB RCSB RCSB 2010-04-16 2010-08-23 2010-10-13 2013-03-06 tmRNA-SmpB: a journey to the center of the bacterial ribosome Weis F Bron P Giudice E Rolland JP Thomas D Felden B Gillet R TMRNA, SMPB, RIBOSOME, TRANS-TRANSLATION Weis F Bron P Giudice E Rolland JP Thomas D Felden B Gillet R tmRNA-SmpB: a journey to the centre of the bacterial ribosome. EMBO J. 29 3810 3818 2010 20953161 doi:10.1038/emboj.2010.252 3iyq FULLOVERLAP Thermus thermophilus 70S ribosome Thermus thermophilus 70S ribosome 5 2.3 70S ribosome false Thermus thermophilus 2.3 ribosome-prokaryote: ALL singleParticle particle 7.5
5mM Hepes-KOH (pH 7.5), 10mM NH4Cl, 10mM MgOAc, 50mM KCl, 0.1mM EDTA and 6mM BetaME
Quantifoil holey-carbon grids previously glow-discharged
 ETHANE 100 100 OTHER
Vitrification instrument: vitrobot
Blot for 5 seconds before plunging JEOL 2200FS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 2 0.9 2.2 50000.0 45700.0 GATAN LIQUID NITROGEN 95 JEOL 0.0 20.0 2009-07-01 KODAK SO-163 FILM NIKON SUPER COOLSCAN 9000 7.5 70 8. Eucentric
Each particle
 13.0 FSC 0.5 CUT-OFF IMAGIC-V 49061 emd_5188.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 128 128 128 -64 -64 -64 128 128 128 419.84 419.84 419.84 90.0 90.0 90.0 X Y Z -0.05623283 0.12125266 0.00177611 0.01004907 3.28 3.28 3.28 0.01 AUTHOR Structure of tmRNA-SMPB complex accomodated into a stalled bacterial ribosome
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 2CZJ A B FLEXIBLE FIT UCSF-Chimera, mdff
Protocol: Rigid Body and flexible fitting. The domains were initially separately fitted by manual docking and then further optimized using mdff.
Cross-Correlation REAL 2OB7 A B FLEXIBLE FIT UCSF-Chimera, mdff
Protocol: Rigid Body and flexible fitting. each subdomain (H2b-c, H5, pk1, pk2, pk3, pk4) were initially separately fitted by manual docking and then further optimized using mdff.
Cross-Correlation REAL