REL RCSB RCSB RCSB 2010-04-15 2010-12-08 2011-01-19 2011-09-23 Cryo-EM of SV40 Virion Shen PS Enderlein D Nelson C Carter WS Kawano M Xing L Swenson RD Olson NH Baker TS Cheng RH Atwood WJ Johne R Belnap DM SV40, simian virus 40, polyomavirus, polyomaviruses Shen PS Enderlein D Nelson CD Carter WS Kawano M Xing L Swenson RD Olson NH Baker TS Cheng RH Atwood WJ Johne R Belnap DM The structure of avian polyomavirus reveals variably sized capsids, non-conserved inter-capsomere interactions, and a possible location of the minor capsid protein VP4. VIROLOGY 411 142 152 2011 21239031 doi:10.1016/j.virol.2010.12.005 Belnap DM Olson NH Cladel NM Newcomb WW Brown JC Kreider JW Christensen ND Baker TS Conserved features in papillomavirus and polyomavirus capsids J.MOL.BIOL. simian virus 40 simian virus 40 virions 1 Simian virus 40
Cryo-EM of simian virus 40 over holey carbon grids
Simian virus 40 VERTEBRATES VP1 500 7 VIRION STRAIN false false SV40 singleParticle particle 7.4
400 mesh copper grid (holey carbon)
 ETHANE HOMEMADE PLUNGER
Vitrification instrument: homemade. vitrification carried out in normal, room atmosphere
blotted for a few seconds before plunging FEI/PHILIPS EM420 FLOOD BEAM BRIGHT FIELD TUNGSTEN HAIRPIN 80 2 0.5 4.9 36000.0 36300.0 GATAN LIQUID NITROGEN KODAK SO-163 FILM NIKON SUPER COOLSCAN 9000 1.75 10 11.5
Micrographs digitized in positive contrast mode.
16. Side entry liquid nitrogen-cooled cryo specimen holder
Particles were selected using X3DPREPROCESS.
each micrograph
 OTHER 23.0 FSC 0.33 CUT-OFF PFT3DR 1155 emd_5187.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 337 337 337 -168 -168 -168 337 337 337 593.25 593.25 593.25 90 90 90 X Y Z -43.647500000000001 306.353999999999985 56.966200000000001 93.676100000000005 1.75 1.75 1.75 151.0 AUTHOR cryo-EM based reconstruction of SV40 virions
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 1SVA RIGID BODY FIT UCSF Chimera
Protocol: Rigid Body
R-factor REAL