2025-10-22 REL PDBe PDBe PDBe 2024-08-23 2024-09-04 2024-09-04 2025-10-22 German Research Foundation (DFG) GRK 2566/1 Germany Mycoplasma pneumoniae protein P116 ectodomain in the full conformation Manger S Mycoplasma pneumoniae Lipid Transfer Lipid Transport, LIPID BINDING PROTEIN Manger S Arghittu SM Sprankel L Meier-Credo J Wieland K Bublak D Langer J Covino R Frangakis AS How does Mycoplasma pneumoniae scavenge lipids from its host membranes? Sci Adv US 11 eady4746 eady4746 2025 41032592 doi:10.1126/sciadv.ady4746 2375-2548 Sprankel L Vizarraga D Martin J Manger S Meier-Credo J Marcos M Julve J Rotllan N Scheffer MP Escola-Gil JC Langer JD Pinol J Fita I Frangakis AS Essential protein P116 extracts cholesterol and other indispensable lipids for Mycoplasmas. Nat Struct Mol Biol US 30 321 329 2023 36782049 doi:10.1093/nar/gky1106 1545-9985 PDB 8a9a unspecified
Single Particle cryo-EM of the lipid binding protein P116 (MPN213) from Mycoplasma pneumoniae at 3.3 Angstrom resolution.
 EMDB EMD-51409 associated EM volume Mycoplasma pneumoniae protein P116 ectodomain in the full conformation Mycoplasma pneumoniae protein P116 ectodomain in the full conformation 0 1 Mycoplasmoides pneumoniae M129 Mycoplasma pneumoniae protein P116 ectodomain in the full conformation Mycoplasmoides pneumoniae M129 Escherichia coli LEVO MKLSAIISLS VAGTVGTTAV VVPTTITLVN KTHQVEHESE QSDFQDIRFG LNSVKLPKAQ PAAATRITVE NGTDKLVNYK SSPQQLFLAK NALKDKLQGE FDKFLSDAKA FPALTADLQE WVDQQLFNPN QSFFDLSAPR SNFTLSSDKK ASLDFIFRFT NFTESVQLLK LPEGVSVVVD SKQSFDYYVN ASAQKLLVLP LSLPDYTLGL NYMFDHITLN GKVVNKFSFN PFKTNLNLAF SNVYNGVDVF EAQKNLVGKG KYLNTHVKAE DVKKDVNANI KNQFDIAKII AELMGKALKE FGNQQEGQPL SFLKVMDKVK EDFEKLFNLV RPGLGKFVKD LIQSSSQAEN KITVYKLIFD NKKTILNLLK ELSIPELNSS LGLVDVLFDG ITDSDGLYER LQSFKDLIVP AVKTNEKTAA LSPLIEELLT QKDTYVFDLI QKHKGILTNL LKNFLADFQK STPFMADQVA IFTELFDNEG AFDLFGEADF VDKIAELFLT KRTVKNGEKI ETKDSLLVTS LKSLLGEKVA ALGDLLDSYI FKNELLNRSV EVAKAEAKDT KGATDYKKEQ AKALKKLFKH IGENTLSKTN LDKITLKEVK NTENVELEET ETTLKVKKLD VEYKVELGNF EIKNGLIKAM LEFLPDTKDL ETTLDKLLFK GESYKAMKDK YIKEGFPGYG WAKGVVPGAF ESIENTFKSA IDKTKSIRDL FGDMLFGNDL SSVKETDSFI TLGGSFDIKY GGENLNVLPA YYSLINSEIG YQIIGVDTTI DATKVKVELK NKEYKGKSPA INGQVKLSQS FFNVWTNMFD SITKQIFQKK YEFKDNIQVF ARNEDNTSRL ELDISDPEQR VIPFAFVDGF GIQLKAVDKN ITKEAGNTEP KSPVIQLYEA LNKEKDQKQQ SKQSPKQLDT KTQLGYLLKL GDNWSKDDYK SLIDDTIINN NYLEASFNSK ITVDRLGIPI DLWLFKIWPK FNLEIPMQGS LQLYSSSVIF PYGIYDTSVQ DAAKIVKRLN FTDMGFKLND PKPNFWFVGF singleParticle particle 0.2 7.4
20 mM Tris-HCl
 C-flat-1.2/1.3 COPPER GLOW DISCHARGE ETHANE 100 277 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 70.0 2.7 0.8 3.5 165000.0 GATAN K2 SUMMIT (4k x 4k) 50.0 1 3836309 cryoSPARC 4.5.3 PHASE FLIPPING AND AMPLITUDE CORRECTION 3.6 FSC 0.143 CUT-OFF cryoSPARC 4.5.3 834674 MAXIMUM LIKELIHOOD cryoSPARC 4.5.3 MAXIMUM LIKELIHOOD cryoSPARC 4.5.3 emd_51409.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 537.6 537.6 537.6 90.0 90.0 90.0 X Y Z -1.3696263 2.4689045 -0.00016761584 0.013920468 1.05 1.05 1.05 0.141 AUTHOR emd_51409_msk_1.map emd_51409_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 537.6 537.6 537.6 90.0 90.0 90.0 X Y Z -0.36444145 0.9891837 -0.000013874388 0.016082158 1.05 1.05 1.05 AUTHOR emd_51409_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 537.6 537.6 537.6 90.0 90.0 90.0 X Y Z -0.32833266 0.99363 -0.000011979738 0.016074164 1.05 1.05 1.05 AUTHOR