2025-05-07 REL PDBe INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY EXPERIMENTAL_SUMMARY citation citation_author em_admin _em_admin.last_update EXPERIMENTAL_SUMMARY em_admin _em_admin.last_update DATA_COLLECTION em_admin _em_admin.last_update PDBe PDBe 2024-08-06 2024-10-30 2024-10-30 2025-05-07 Ministerio de Ciencia e Innovacion (MCIN) rant PID2022-136594NB-I00 funded by MICIU /AEI/ 10.13039/501100011033/ Spain European Research Council (ERC) HighResCells (ERC-2018-SyG, Proposal: 810057 European Union iNEXT-Discovery iNEXT-Discovery (Proposal: 871037) European Union Academia Sinica (Taiwan) (AS-KPQ-109-TPP2) Taiwan Academia Sinica (Taiwan) NSTC 113-2740-B-006-004 Taiwan Academia Sinica (Taiwan) AS-CFII-108-110 Taiwan Herreros D Mata CP Noddings C Irene D Agard DA Tsai M-D Sorzano COS Carazo JM SARS-CoV-2, Spike Protein, temperature dependence, VIRAL PROTEIN Herreros D Mata CP Noddings C Irene D Krieger J Agard DA Tsai MD Sorzano COS Carazo JM Nat Commun UK 16 3751 3751 2025 40263313 doi:10.1038/s41467-025-59135-0 2041-1723 Herreros D Mata CP Noddings C Irene D Krieger J Agard DA Tsai MD Sorzano COS Carazo JM Biorxiv US 2024 39345408 doi:10.1101/2024.09.16.613176 2692-8205 9gdx FULLOVERLAP SARS-CoV-2 Spike protein Beta Variant at 4C SARS-CoV-2 Spike protein Beta Variant at 4C 0 1 Severe acute respiratory syndrome coronavirus 2 0.54 Spike glycoprotein,Fibritin Enterobacteria phage T4 0.136142703 3 Cricetulus griseus LEVO QCVNFTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFANPVLPFNDGVYFA STEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQ PFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRGLPQGFSALEPLVDLPIGINITRFQTLHISYLTPGDSSS GWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLC PFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTG NIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVKGFNCYFPLQSYG FQPTYGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHV NNSYECDIPIGAGICASYQTQTNSPGSASSVASQSIIAYTMSLGVENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSV DCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRS FIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQI PFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSV LNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSA PHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNT VYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQGSGYIPEA PRDGQAYVRKDGEWVLLSTFLGRSLEVLFQ P0DTC2 P10104 singleParticle particle 0.25 5.5 100.0 C6H9Na3O9 Trisodium Citrate Dihydrate Quantifoil R1.2/1.3 GOLD 200 GLOW DISCHARGE 30 ETHANE 100 4 FEI VITROBOT MARK IV TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 1.5 2.2 81000.0 FEI TITAN KRIOS AUTOGRID HOLDER GATAN K3 BIOQUANTUM (6k x 4k) 11137 50.0 1 CTFFIND Gctf NONE C1 2.8 FSC 0.143 CUT-OFF 479908 MAXIMUM LIKELIHOOD cryoSPARC OTHER

HetSIREN

7VX1 PDB experimental model

7VX1

FLEXIBLE FIT REAL emd_51279_additional_21.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 224 224 224 -112 -112 -112 224 224 224 313.6 313.6 313.6 90.0 90.0 90.0 X Y Z -0.12166959 1.6416485 0.0014935927 0.02345976 1.4 1.4 1.4 AUTHOR ::::EMDATABANK.org::::EMD-51279:::: SARS-CoV-2 Spike protein Beta Variant at 4C flexibility map 20 1UP emd_51279_additional_20.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 224 224 224 -112 -112 -112 224 224 224 313.6 313.6 313.6 90.0 90.0 90.0 X Y Z -0.1350541 1.5998727 0.0012157153 0.021978632 1.4 1.4 1.4 AUTHOR ::::EMDATABANK.org::::EMD-51279:::: SARS-CoV-2 Spike protein Beta Variant at 4C flexibility map 19 1UP emd_51279_additional_19.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 224 224 224 -112 -112 -112 224 224 224 313.6 313.6 313.6 90.0 90.0 90.0 X Y Z -0.14255755 1.6219661 0.0007190626 0.020662235 1.4 1.4 1.4 AUTHOR ::::EMDATABANK.org::::EMD-51279:::: SARS-CoV-2 Spike protein Beta Variant at 4C flexibility map 18 2UP emd_51279_additional_18.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 224 224 224 -112 -112 -112 224 224 224 313.6 313.6 313.6 90.0 90.0 90.0 X Y Z -0.14701678 1.6229634 0.0012857703 0.022563966 1.4 1.4 1.4 AUTHOR ::::EMDATABANK.org::::EMD-51279:::: SARS-CoV-2 Spike protein Beta Variant at 4C flexibility map 17 2UP emd_51279_additional_17.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 224 224 224 -112 -112 -112 224 224 224 313.6 313.6 313.6 90.0 90.0 90.0 X Y Z -0.1471995 1.7905352 0.0010491608 0.022650529 1.4 1.4 1.4 AUTHOR ::::EMDATABANK.org::::EMD-51279:::: SARS-CoV-2 Spike protein Beta Variant at 4C flexibility map 16 2UP emd_51279_additional_16.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 224 224 224 -112 -112 -112 224 224 224 313.6 313.6 313.6 90.0 90.0 90.0 X Y Z -0.13175161 1.5387322 0.001526191 0.02285144 1.4 1.4 1.4 AUTHOR ::::EMDATABANK.org::::EMD-51279:::: SARS-CoV-2 Spike protein Beta Variant at 4C flexibility map 15 1UP emd_51279_additional_15.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 224 224 224 -112 -112 -112 224 224 224 313.6 313.6 313.6 90.0 90.0 90.0 X Y Z -0.123822674 1.5442072 0.0013319475 0.021934235 1.4 1.4 1.4 AUTHOR ::::EMDATABANK.org::::EMD-51279:::: SARS-CoV-2 Spike protein Beta Variant at 4C flexibility map 14 1UP emd_51279_additional_14.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 224 224 224 -112 -112 -112 224 224 224 313.6 313.6 313.6 90.0 90.0 90.0 X Y Z -0.1372271 1.6624624 0.0013719461 0.022763746 1.4 1.4 1.4 AUTHOR ::::EMDATABANK.org::::EMD-51279:::: SARS-CoV-2 Spike protein Beta Variant at 4C flexibility map 13 1UP emd_51279_additional_13.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 224 224 224 -112 -112 -112 224 224 224 313.6 313.6 313.6 90.0 90.0 90.0 X Y Z -0.14647545 1.6176665 0.00095664774 0.02103852 1.4 1.4 1.4 AUTHOR ::::EMDATABANK.org::::EMD-51279:::: SARS-CoV-2 Spike protein Beta Variant at 4C flexibility map 12 2UP emd_51279_additional_12.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 224 224 224 -112 -112 -112 224 224 224 313.6 313.6 313.6 90.0 90.0 90.0 X Y Z -0.15913089 1.7061852 0.0011174172 0.02231256 1.4 1.4 1.4 AUTHOR ::::EMDATABANK.org::::EMD-51279:::: SARS-CoV-2 Spike protein Beta Variant at 4C flexibility map 11 2UP emd_51279_additional_11.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 224 224 224 -112 -112 -112 224 224 224 313.6 313.6 313.6 90.0 90.0 90.0 X Y Z -0.14522615 1.4094797 -0.0061789905 0.02064657 1.4 1.4 1.4 AUTHOR ::::EMDATABANK.org::::EMD-51279:::: SARS-CoV-2 Spike protein Beta Variant at 4C flexibility map 10 1UP emd_51279_additional_10.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 224 224 224 -112 -112 -112 224 224 224 313.6 313.6 313.6 90.0 90.0 90.0 X Y Z -0.12751807 1.494135 0.001244874 0.021342842 1.4 1.4 1.4 AUTHOR ::::EMDATABANK.org::::EMD-51279:::: SARS-CoV-2 Spike protein Beta Variant at 4C flexibility map 09 1UP emd_51279_additional_9.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 224 224 224 -112 -112 -112 224 224 224 313.6 313.6 313.6 90.0 90.0 90.0 X Y Z -0.12903596 1.6506151 0.0014033681 0.022924146 1.4 1.4 1.4 AUTHOR ::::EMDATABANK.org::::EMD-51279:::: SARS-CoV-2 Spike protein Beta Variant at 4C flexibility map 08 2UP emd_51279_additional_8.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 224 224 224 -112 -112 -112 224 224 224 313.6 313.6 313.6 90.0 90.0 90.0 X Y Z -0.13305458 1.5672404 0.0013681629 0.022461595 1.4 1.4 1.4 AUTHOR ::::EMDATABANK.org::::EMD-51279:::: SARS-CoV-2 Spike protein Beta Variant at 4C flexibility map 07 2UP emd_51279_additional_7.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 224 224 224 -112 -112 -112 224 224 224 313.6 313.6 313.6 90.0 90.0 90.0 X Y Z -0.15703575 1.6807982 0.0013427533 0.02348246 1.4 1.4 1.4 AUTHOR ::::EMDATABANK.org::::EMD-51279:::: SARS-CoV-2 Spike protein Beta Variant at 4C flexibility map 06 2UP emd_51279_additional_6.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 224 224 224 -112 -112 -112 224 224 224 313.6 313.6 313.6 90.0 90.0 90.0 X Y Z -0.1421148 1.7212037 0.0008456341 0.02104022 1.4 1.4 1.4 AUTHOR ::::EMDATABANK.org::::EMD-51279:::: SARS-CoV-2 Spike protein Beta Variant at 4C flexibility map 05 2UP emd_51279_additional_5.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 224 224 224 -112 -112 -112 224 224 224 313.6 313.6 313.6 90.0 90.0 90.0 X Y Z -0.112864025 1.5910025 0.00185421 0.024571728 1.4 1.4 1.4 AUTHOR ::::EMDATABANK.org::::EMD-51279:::: SARS-CoV-2 Spike protein Beta Variant at 4C flexibility map 04 1UP emd_51279_additional_4.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 224 224 224 -112 -112 -112 224 224 224 313.6 313.6 313.6 90.0 90.0 90.0 X Y Z -0.15764189 1.6993375 0.0011378845 0.022008821 1.4 1.4 1.4 AUTHOR ::::EMDATABANK.org::::EMD-51279:::: SARS-CoV-2 Spike protein Beta Variant at 4C flexibility map 03 2UP emd_51279_additional_3.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 224 224 224 -112 -112 -112 224 224 224 313.6 313.6 313.6 90.0 90.0 90.0 X Y Z -0.13337809 1.5555961 0.00088990154 0.02055054 1.4 1.4 1.4 AUTHOR ::::EMDATABANK.org::::EMD-51279:::: SARS-CoV-2 Spike protein Beta Variant at 4C flexibility map 02 1UP emd_51279_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 224 224 224 -112 -112 -112 224 224 224 313.6 313.6 313.6 90.0 90.0 90.0 X Y Z -0.1607854 1.7027813 0.00080642395 0.021026524 1.4 1.4 1.4 AUTHOR ::::EMDATABANK.org::::EMD-51279:::: SARS-CoV-2 Spike protein Beta Variant at 4C flexibility map 01 2UP emd_51279_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 224 224 224 -112 -112 -112 224 224 224 313.6 313.6 313.6 90.0 90.0 90.0 X Y Z -0.0016719898 1.7382411 0.0015227394 0.027583271 1.4 1.4 1.4 AUTHOR ::::EMDATABANK.org::::EMD-51279:::: SARS-CoV-2 Spike protein Beta Variant at 4C sharpened map emd_51279_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 224 224 224 -112 -112 -112 224 224 224 313.6 313.6 313.6 90.0 90.0 90.0 X Y Z -0.6454787 1.8511078 0.0040080943 0.06357576 1.4 1.4 1.4 AUTHOR ::::EMDATABANK.org::::EMD-51279:::: SARS-CoV-2 Spike protein Beta Variant at 4C halfmap 02 emd_51279_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 224 224 224 -112 -112 -112 224 224 224 313.6 313.6 313.6 90.0 90.0 90.0 X Y Z -0.5387481 1.9170151 0.003976152 0.06352676 1.4 1.4 1.4 AUTHOR ::::EMDATABANK.org::::EMD-51279:::: SARS-CoV-2 Spike protein Beta Variant at 4C halfmap 01