2026-09-09 REL PDBe INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY STRUCTURE_SUMMARY em_admin em_software pdbx_entry_details _em_admin.last_update _pdbx_entry_details.has_protein_modification EXPERIMENTAL_SUMMARY em_admin em_software _em_admin.last_update DATABASE_REFERENCES citation citation_author em_admin _citation.country _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_volume _citation.page_first _citation.page_last _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _citation_author.identifier_ORCID _citation_author.name _em_admin.last_update EXPERIMENTAL_SUMMARY citation citation_author em_admin _citation.country _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_volume _citation.page_first _citation.page_last _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _citation_author.identifier_ORCID _citation_author.name _em_admin.last_update PDBe PDBe 2024-07-31 2024-08-21 2024-08-21 2026-09-09 Wellcome Trust 221868/Z/20/Z United Kingdom Biotechnology and Biological Sciences Research Council (BBSRC) BB/X01097X/1 United Kingdom Polish National Science Centre 2020/39/B/NZ1/02898 Poland Michalczyk E Ghilarov D DNA gyrase, type II topoisomerase, supercoiling, DNA crossover, ISOMERASE Michalczyk E Pakosz-Stepien Z Liston JD Gittins O Pabis M Heddle JG Ghilarov D Proc.Natl.Acad.Sci.USA US 121 e2407398121 e2407398121 2024 39589884 doi:10.1073/pnas.2407398121 1091-6490 0040 PNASA6 EMD-51218 consensus EM volume

E.coli gyrase holocomplex with 217 bp chirally wrapped DNA (consensus map)

EMD-51211 focused EM volume

E.coli gyrase holocomplex with 217 bp chirally wrapped DNA (focussed map for CTD II)

EMD-51212 focused EM volume

E.coli gyrase holocomplex with 217 bp chirally wrapped DNA (focussed map for CTD I)

EMD-51213 focused EM volume

E.coli gyrase holocomplex with 217 bp chirally wrapped DNA (focussed map for CTD II & T-DNA)

EMD-51215 focused EM volume

E.coli gyrase holocomplex with 217 bp chirally wrapped DNA (focussed map for GHKL domain, chain B)

EMD-51216 focused EM volume

E.coli gyrase holocomplex with 217 bp chirally wrapped DNA (focussed map for GHKL domain, chain D)

9gbv FULLOVERLAP EMDB EMD-51218 consensus EM volume

E.coli gyrase holocomplex with 217 bp chirally wrapped DNA (consensus map)

EMDB EMD-51211 focused EM volume

E.coli gyrase holocomplex with 217 bp chirally wrapped DNA (focussed map for CTD II)

EMDB EMD-51212 focused EM volume

E.coli gyrase holocomplex with 217 bp chirally wrapped DNA (focussed map for CTD I)

EMDB EMD-51213 focused EM volume

E.coli gyrase holocomplex with 217 bp chirally wrapped DNA (focussed map for CTD II & T-DNA)

EMDB EMD-51215 focused EM volume

E.coli gyrase holocomplex with 217 bp chirally wrapped DNA (focussed map for GHKL domain, chain B)

EMDB EMD-51216 focused EM volume

E.coli gyrase holocomplex with 217 bp chirally wrapped DNA (focussed map for GHKL domain, chain D)

EMDB EMD-51222 associated EM volume

E.coli gyrase holocomplex with chirally wrapped 217 bp DNA fragment

Ternary complex of E.coli DNA gyrase with 217 bp linear dsDNA fragment Ternary complex of E.coli DNA gyrase with 217 bp linear dsDNA fragment 0 1 2 3 4 E. coli DNA gyrase 1 1 2 Escherichia coli MG1655 dsDNA 1 3 4 Escherichia phage Mu DNA gyrase subunit A Escherichia coli 0.097646195 2 Escherichia coli BL21(DE3) LEVO SSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPH GDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMP TKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNL YSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHA PTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQ RRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEF EEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG VRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITD AGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEEELEVLF P0AES4 5.6.2.2 DNA gyrase subunit B Escherichia coli 0.09089173399999999 2 Escherichia coli LEVO GPSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIP TGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGE TEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPN IFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGL IAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALD LAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIG RDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISI ALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELND KEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASF EQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKA ANIDIENLYFQ P0AES6 5.6.2.2 Mu217 DNA (159-MER) Escherichia phage Mu 0.065926109 1 (DT)(DT)(DC)(DC)(DT)(DG)(DC)(DG)(DC)(DG)(DT)(DC)(DC)(DT)(DT)(DA)(DT)(DA)(DT)(DG) (DG)(DG)(DG)(DC)(DT)(DG)(DG)(DA)(DT)(DA)(DA)(DG)(DA)(DC)(DC)(DG)(DG)(DG)(DG)(DA) (DA)(DC)(DA)(DG)(DG)(DA)(DA)(DA)(DT)(DT)(DT)(DT)(DT)(DG)(DA)(DT)(DG)(DC)(DC)(DA) (DT)(DC)(DA)(DG)(DA)(DA)(DA)(DA)(DC)(DG)(DC)(DG)(DT)(DC)(DA)(DG)(DC)(DG)(DC)(DC) (DG)(DC)(DT)(DC)(DT)(DG)(DA)(DG)(DG)(DC)(DA)(DA)(DT)(DA)(DA)(DA)(DC)(DA)(DG)(DA) (DA)(DT)(DC)(DA)(DG)(DG)(DC)(DA)(DT)(DA)(DA)(DA)(DA)(DT)(DC)(DA)(DC)(DC)(DC)(DG) (DC)(DA)(DC)(DA)(DG)(DA)(DT)(DT)(DT)(DT)(DT)(DT)(DA)(DA)(DA)(DA)(DC)(DG)(DC)(DG) (DC)(DC)(DA)(DC)(DG)(DG)(DG)(DA)(DT)(DT)(DT)(DT)(DT)(DA)(DA)(DA)(DC)(DC)(DG)(DG) (DT)(DA)(DT)(DT)(DT)(DA)(DA)(DC)(DG)(DG)(DT)(DG)(DT)(DA)(DT)(DG)(DA)(DA)(DT)(DC) (DC)(DC)(DG)(DT)(DT)(DT)(DT)(DA)(DT)(DC)(DT)(DT)(DC)(DC)(DT)(DT)(DT)(DC)(DA)(DC) (DT)(DT)(DT)(DC)(DT)(DT)(DT)(DC)(DT)(DC)(DC)(DA)(DG)(DT) M74911.1 DNA Mu217 DNA (159-MER) Escherichia phage Mu 0.066202258 1 (DA)(DC)(DT)(DG)(DG)(DA)(DG)(DA)(DA)(DA)(DG)(DA)(DA)(DA)(DG)(DT)(DG)(DA)(DA)(DA) (DG)(DG)(DA)(DA)(DG)(DA)(DT)(DA)(DA)(DA)(DA)(DC)(DG)(DG)(DG)(DA)(DT)(DT)(DC)(DA) (DT)(DA)(DC)(DA)(DC)(DC)(DG)(DT)(DT)(DA)(DA)(DA)(DT)(DA)(DC)(DC)(DG)(DG)(DT)(DT) (DT)(DA)(DA)(DA)(DA)(DA)(DT)(DC)(DC)(DC)(DG)(DT)(DG)(DG)(DC)(DG)(DC)(DG)(DT)(DT) (DT)(DT)(DA)(DA)(DA)(DA)(DA)(DA)(DT)(DC)(DT)(DG)(DT)(DG)(DC)(DG)(DG)(DG)(DT)(DG) (DA)(DT)(DT)(DT)(DT)(DA)(DT)(DG)(DC)(DC)(DT)(DG)(DA)(DT)(DT)(DC)(DT)(DG)(DT)(DT) (DT)(DA)(DT)(DT)(DG)(DC)(DC)(DT)(DC)(DA)(DG)(DA)(DG)(DC)(DG)(DG)(DC)(DG)(DC)(DT) (DG)(DA)(DC)(DG)(DC)(DG)(DT)(DT)(DT)(DT)(DC)(DT)(DG)(DA)(DT)(DG)(DG)(DC)(DA)(DT) (DC)(DA)(DA)(DA)(DA)(DA)(DT)(DT)(DT)(DC)(DC)(DT)(DG)(DT)(DT)(DC)(DC)(DC)(DC)(DG) (DG)(DT)(DC)(DT)(DT)(DA)(DT)(DC)(DC)(DA)(DG)(DC)(DC)(DC)(DC)(DA)(DT)(DA)(DT)(DA) (DA)(DG)(DG)(DA)(DC)(DG)(DC)(DG)(DC)(DA)(DG)(DG)(DA)(DA) M74911.1 DNA MAGNESIUM ION 2.4305e-05 2 MG singleParticle particle 8.0 ETHANE 95 283 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 0.9 2.1 GATAN K3 BIOQUANTUM (6k x 4k) 41.84 1 PHASE FLIPPING AND AMPLITUDE CORRECTION C1 2.32 FSC 0.143 CUT-OFF cryoSPARC 170369 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD AB INITIO MODEL