<emd emdb_id="EMD-5118" version="3.0.1.1" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
    <admin>
        <current_status>
            <code>REL</code>
            <processing_site>RCSB</processing_site>
        </current_status>
        <sites>
            <deposition>RCSB</deposition>
            <last_processing>RCSB</last_processing>
        </sites>
        <key_dates>
            <deposition>2009-06-04</deposition>
            <header_release>2010-02-11</header_release>
            <map_release>2010-02-11</map_release>
            <update>2010-02-11</update>
        </key_dates>
        <title>Clathrin D6 coat with Hsc70 and Auxilin</title>
        <authors_list>
            <author>Xing Y</author>
            <author>Boecking T</author>
            <author>Wolf M</author>
            <author>Kirchhausen T</author>
            <author>Harrison SC</author>
        </authors_list>
        <keywords>clathrin, D6 coat, Hsc70, Auxilin, uncoating</keywords>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Xing Y</author>
                    <author order="2">Boecking T</author>
                    <author order="3">Wolf M</author>
                    <author order="4">Kirchhausen T</author>
                    <author order="5">Harrison SC</author>
                    <title>Structure of clathrin coat with bound Hsc70 and auxilin: mechanism of Hsc70-facilitated disassembly.</title>
                    <journal>EMBO J.</journal>
                    <volume>29</volume>
                    <first_page>655</first_page>
                    <last_page>665</last_page>
                    <year>2010</year>
                    <external_references type="PUBMED">20033059</external_references>
                    <external_references type="DOI">doi:10.1038/emboj.2009.383</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
    </crossreferences>
    <sample>
        <name>Clathrin coats bound with Hsc70(1-554) and Auxilin(547-910)</name>
        <supramolecule_list>
            <sample_supramolecule supramolecule_id="1000">
                <name>Clathrin coats bound with Hsc70(1-554) and Auxilin(547-910)</name>
                <details>clathrin coats assembled from clathrin and AP-2 with excess of Hsc70(1-554) and Auxilin(547-910) added</details>
                <number_unique_components>9</number_unique_components>
            </sample_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <protein_or_peptide macromolecule_id="1">
                <name synonym="clathrin coat in complex with Hsc70 and auxilin">uncoating intermediate of clathrin coat</name>
                <natural_source database="NCBI">
                    <organism ncbi="9913">Bos taurus</organism>
                    <synonym_organism>cattle</synonym_organism>
                    <tissue>Brain</tissue>
                </natural_source>
                <number_of_copies>108</number_of_copies>
                <oligomeric_state>D6 assemble</oligomeric_state>
                <recombinant_exp_flag>false</recombinant_exp_flag>
                <recombinant_expression database="NCBI" />
                <sequence />
            </protein_or_peptide>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <concentration units="mg/mL">0.25</concentration>
                    <buffer>
                        <ph>6.0</ph>
                        <details>20mM MES, pH6.0, 2mM MgCl2, 25mM KCl, 10mM (NH4)2SO4, and 2mM DTT</details>
                    </buffer>
                    <grid>
                        <details>holey carbon grid</details>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <chamber_humidity units="percentage">60</chamber_humidity>
                        <chamber_temperature units="K">93</chamber_temperature>
                        <instrument>OTHER</instrument>
                        <details>Vitrification instrument: FEI Vitrobot</details>
                        <timed_resolved_state>Vitrified 30 msec after spraying with effector</timed_resolved_state>
                        <method>Blot for 2 seconds before plunging</method>
                    </vitrification>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI TECNAI F20</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">200</acceleration_voltage>
                    <nominal_cs units="mm">2</nominal_cs>
                    <nominal_defocus_min units="&#181;m">2.0</nominal_defocus_min>
                    <nominal_defocus_max units="&#181;m">5.0</nominal_defocus_max>
                    <nominal_magnification>50000.0</nominal_magnification>
                    <calibrated_magnification>51159.0</calibrated_magnification>
                    <specimen_holder_model>GATAN LIQUID NITROGEN</specimen_holder_model>
                    <temperature>
                        <temperature_average units="K">93</temperature_average>
                    </temperature>
                    <date>2007-01-01</date>
                    <image_recording_list>
                        <image_recording>
                            <film_or_detector_model category="FILM">KODAK SO-163 FILM</film_or_detector_model>
                            <digitization_details>
                                <scanner>ZEISS SCAI</scanner>
                                <sampling_interval units="&#181;m">7</sampling_interval>
                            </digitization_details>
                            <number_real_images>900</number_real_images>
                            <average_electron_dose_per_image units="e/&#8491;^2">20</average_electron_dose_per_image>
                            <od_range>1.4</od_range>
                            <bits_per_pixel>8.</bits_per_pixel>
                        </image_recording>
                    </image_recording_list>
                    <specimen_holder>side entry liquid nitrogen-cooled cryo specimen holder.</specimen_holder>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <ctf_correction>
                    <details>CTF correction of each particle.</details>
                </ctf_correction>
                <final_reconstruction>
                    <algorithm>OTHER</algorithm>
                    <resolution res_type="BY AUTHOR" units="&#8491;">15.2</resolution>
                    <resolution_method>FSC 0.143 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>Frealign</name>
                        </software>
                    </software_list>
                    <details>a raw map without B factor sharpening and n.c.s averaging</details>
                    <number_images_used>1500</number_images_used>
                </final_reconstruction>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="65537">
        <file>emd_5118.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>256</col>
            <row>256</row>
            <sec>256</sec>
        </dimensions>
        <origin>
            <col>-128</col>
            <row>-128</row>
            <sec>-128</sec>
        </origin>
        <spacing>
            <x>256</x>
            <y>256</y>
            <z>256</z>
        </spacing>
        <cell>
            <a units="&#8491;">1075.2</a>
            <b units="&#8491;">1075.2</b>
            <c units="&#8491;">1075.2</c>
            <alpha units="deg">90</alpha>
            <beta units="deg">90</beta>
            <gamma units="deg">90</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-0.919363</minimum>
            <maximum>2.08404</maximum>
            <average>-0.0175207</average>
            <std>0.259777</std>
        </statistics>
        <pixel_spacing>
            <x units="&#8491;">4.2</x>
            <y units="&#8491;">4.2</y>
            <z units="&#8491;">4.2</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>1.0</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <annotation_details>This is a volume of a D6 clathrin coat bound with Hsc70(1-554) and Auxilin(547-910)</annotation_details>
        <details>::::EMDATABANK.org::::EMD-5118::::</details>
    </map>
    <interpretation>
        <modelling_list>
            <modelling>
                <initial_model>
                    <access_code>1N4C</access_code>
                </initial_model>
                <initial_model>
                    <access_code>1BPO</access_code>
                </initial_model>
                <initial_model>
                    <access_code>1B89</access_code>
                </initial_model>
                <refinement_protocol>RIGID BODY FIT</refinement_protocol>
                <details>Protocol: Rigid Body. Various segments of clathrin heavy chain ere separately fitted by manual docking using program O, and fitting was improved by MAVE</details>
                <target_criteria>DENSITY CORRELATION</target_criteria>
                <refinement_space>REAL</refinement_space>
            </modelling>
        </modelling_list>
    </interpretation>
</emd>
