REL RCSB RCSB RCSB 2009-04-13 2009-04-20 2010-03-30 2011-09-23 West Nile virus in complex with a single-chain antibody derivative of the neutralizing monoclonal antibody E16 Kaufmann B Chipman PR Holdaway HA Johnson S Kuhn RJ Diamond MS Rossmann MG flavivirus, West Nile Virus, neutralizing antibody, complex, single-chain Kaufmann B Chipman PR Holdaway HA Johnson S Fremont DH Kuhn RJ Diamond MS Rossmann MG Capturing a flavivirus pre-fusion intermediate. PLOS PATHOG. 5 e1000672 e1000672 2009 19956725 doi:10.1371/journal.ppat.1000672 West Nile virus NY99 complexed with single-chain antibody derivative of neutralizing monoclonal antibody E16 West Nile virus NY99 complexed with single-chain antibody derivative of neutralizing monoclonal antibody E16 T1 icosahedron with three E monomers and two scFv molecules per asymmetric unit 2 20 West Nile Virus NY99
the virus is complexed with a single-chain antibody derivative of the neutralizing antibody E16 (120 scFv molecules per virion)
West Nile Virus NY99 Homo sapiens VERTEBRATES 17. VIRION STRAIN true false West Nile Virus E16 scFv derivative unidentified 0.025
single-chain antibody derivative of the neutralizing antibody E16 complexed with West Nile virus (120 scFv molecules per virion)
120 Monomer true singleParticle particle 1. 8.0
12 mM Tris-HCl, 120 mM NaCl, 1 mM EDTA
400 mesh copper grid
 ETHANE HOMEMADE PLUNGER
Vitrification instrument: Guillotine-style plunge freezeing device
A small vial of ethane is placed inside a larger liquid nitrogen reservoir. The grid holding a few microliters of the sample is held in place at the bottom of a plunger by the means of fine tweezers. Once the ethane in the vial is completely frozen, it needs to be slightly melted. When the liquid ethane is ready, a piece of filter paper is then pressed against the sample to blot of excess buffer, sufficient to leave a thin layer on the grid. After a predetermined time, the filter paper is removed, and the plunger is allowed to drop into the liquid ethane. Once the grid enters the liquid ethane, the sample is rapidly frozen, and the grid is transferred under liquid nitrogen to a storage box immersed liquid nitrogen for later use in the microscope. FEI/PHILIPS CM300FEG/T FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.0 1.35 2.74 45000.0 47190.0 GATAN LIQUID NITROGEN 98 live FFT at 200K mag
low dose imaging
2007-07-24 KODAK SO-163 FILM ZEISS SCAI 7 53 17.22
scanned images binned 2x2
1.0 8. Eucentric -0 0
The particles were selected interactively at the computer terminal.
each particle
 22.75 FSC 0.5 CUT-OFF PFTSEARCH, PO2R, P3DR 783 emd_5115.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 280 280 280 -140 -140 -140 280 280 280 830.76 830.76 830.76 90 90 90 X Y Z -1.14105 4.20053 0.00000000567642 1.0 2.967 2.967 2.967 1.5 West Nile virus in complex with a single-chain antibody derivative of the neutralizing monoclonal antibody E16.
::::EMDATABANK.org::::EMD-5115::::