2025-10-01 REL PDBe INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY PDBe PDBe 2024-07-07 2025-04-16 2025-04-16 2025-10-01 UK Research and Innovation (UKRI) U105170648 United Kingdom Wellcome Trust 222503/Z/21/Z United Kingdom Local refinement of the RNF213 RING domain and the IpaH1.4 LRR domain in the structure of human RNF213 bound to the secreted effector IpaH1.4 from Shigella flexneri Naydenova K Randow F RNF213, IpaH1.4, IpaH, E3 ligase, RING, LRR, NEL, secreted effector, Shigella, inhibitor, complex, AAA, ATPase, ANTIMICROBIAL PROTEIN Naydenova K Boyle KB Pathe C Pothukuchi P Crespillo-Casado A Scharte F Hammoudi PM Otten EG Alto NM Randow F Shigella flexneri evades LPS ubiquitylation through IpaH1.4-mediated degradation of RNF213. Nat.Struct.Mol.Biol. US 32 1741 1751 2025 40205224 doi:10.1038/s41594-025-01530-8 1545-9985 EMDB EMD-50921 associated EM volume E3 ligase RNF213, bound to the secreted effector IpaH1.4 from Shigella flexneri E3 ligase RNF213, bound to the secreted effector IpaH1.4 from Shigella flexneri 0 1 2 Homo singleParticle particle 8.0 UltrAuFoil R1.2/1.3 GOLD 300 GOLD HOLEY 50.0 ETHANE TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 50.0 2.7 0.8 0.7000000000000001 2.2 3.5 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN FEI FALCON IV (4k x 4k) 1 16931 4.56 32.0 1 PHASE FLIPPING AND AMPLITUDE CORRECTION 3.3 FSC 0.143 CUT-OFF 334921 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_50921.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 471.552 471.552 471.552 90.0 90.0 90.0 X Y Z -0.1584747 0.23082657 0.000010824219 0.0010466406 1.228 1.228 1.228 0.025 AUTHOR Focused refinement of the RNF213 RING domain and the IpaH1.4 LRR domain in the RNF213-IpaH1.4 complex (post-processed, auto-sharpened map) emd_50921_msk_1.map emd_50921_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 471.552 471.552 471.552 90.0 90.0 90.0 X Y Z -0.043292794 0.09040608 0.000072290524 0.0010693553 1.228 1.228 1.228 AUTHOR Focused refinement of the RNF213 RING domain and the IpaH1.4 LRR domain in the RNF213-IpaH1.4 complex (non-filtered, non-sharpened map) emd_50921_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 471.552 471.552 471.552 90.0 90.0 90.0 X Y Z -0.049089074 0.09857001 0.00007331702 0.0013829399 1.228 1.228 1.228 AUTHOR Focused refinement of the RNF213 RING domain and the IpaH1.4 LRR domain in the RNF213-IpaH1.4 complex (half map 1) emd_50921_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 471.552 471.552 471.552 90.0 90.0 90.0 X Y Z -0.04680613 0.09631784 0.00007127487 0.0013838192 1.228 1.228 1.228 AUTHOR Focused refinement of the RNF213 RING domain and the IpaH1.4 LRR domain in the RNF213-IpaH1.4 complex (half map 1)