2025-10-08 REL PDBe INITIAL_RELEASE REPOSITORY STRUCTURE_SUMMARY atom_site em_admin pdbx_modification_feature pdbx_struct_sheet_hbond pdbx_validate_rmsd_angle pdbx_validate_torsion struct_conf struct_conn struct_mon_prot_cis struct_sheet struct_sheet_order struct_sheet_range _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _em_admin.last_update _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.sheet_id _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_seq_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_seq_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_seq_id _struct_conf.end_label_asym_id _struct_conf.end_label_comp_id _struct_conf.end_label_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.pdbx_PDB_helix_length _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_label_asym_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_sheet.number_strands _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.sense _struct_sheet_order.sheet_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_seq_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.id _struct_sheet_range.sheet_id DATABASE_REFERENCES citation citation_author em_admin _em_admin.last_update DATABASE_REFERENCES citation citation_author em_admin _citation.journal_volume _citation.page_first _citation.page_last _citation_author.identifier_ORCID _em_admin.last_update DATABASE_REFERENCES citation citation_author em_admin _citation.page_first _citation.page_last _citation_author.identifier_ORCID _em_admin.last_update PDBe PDBe 2024-06-12 2024-11-06 2024-11-06 2025-10-08 Swedish Research Council 2018-05851 Sweden LGTV TP21. Langat virus, strain TP21 Bisikalo K Rosendal E Flavivirus, Langat virus, recombinant virus, VIRUS Rosendal E Bisikalo K Willekens SMA Lindgren M Holoubek J Svoboda P Lappalainen A Konighofer E Mirgorodskaya E Norden R Morini F Rosenbaum W Ruzek D Ahlgren U Anastasina M Merits A Butcher SJ Nilsson E Overby AK Influence of the pre-membrane and envelope proteins on structure, pathogenicity, and tropism of tick-borne encephalitis virus. J.Virol. US 99 e0087025 e0087025 2025 40827915 doi:10.1128/jvi.00870-25 1098-5514 0825 JOVIAM Rosendal E Bisikalo K Willekens SM Lindgren M Holoubek J Svoboda P Lappalainen A Konighofer E Mirgorodskaya E Norden R Morini F Rosenbaum W Ruzek D Ahlgren U Anastasina M Merits A Butcher SJ Nilsson E Overby AK The influence of the pre-membrane and envelope proteins on structure, pathogenicity and tropism of tick-borne encephalitis virus Biorxiv US 2024 doi:10.1101/2024.10.16.618642 2692-8205 9foj FULLOVERLAP PDB 9FK0 unspecified EMDB EMD-50624 associated EM volume
LGTV TP21. Langat virus, strain TP21
 Langat virus (strain TP21) Langat virus (strain TP21) 0 1 2 Langat virus (strain TP21) 500.0 3 VIRION STRAIN true false Envelope protein E Langat virus (strain TP21) 0.053574301 3 Homo sapiens LEVO SRCTHLENRDFVTGVQGTTRLTLVLELGGCVTVTADGKPSLDVWLDSIYQESPAQTREYCLHAKLTGTKVAARCPTMGPA TLPEEHQSGTVCKRDQSDRGWGNHCGLFGKGSIVTCVKFTCEDKKKATGHVYDVNKITYTIKVEPHTGEFVAANETHSGR KSASFTVSSEKTILTLGDYGDVSLLCRVASGVDLAQTVVLALDKTHEHLPTAWQVHRDWFNDLALPWKHDGAEAWNEAGR LVEFGTPHAVKMDVFNLGDQTGVLLKSLAGVPVASIEGTKYHLKSGHVTCEVGLEKLKMKGLTYTVCDKTKFTWKRAPTD SGHDTVVMEVGFSGTRPCRIPVRAVAHGVPEVNVAMLITPNPTMENNGGGFIEMQLPPGDNIIYVGDLNHQWFQKGSSIG RVLQKTRKGIERLTVLGEHAWDFGSVGGVMTSIGRAMHTVLGGAFNTLLGGVGFLPKILLGVAMAWLGLNMRNPTLSMGF LLSGGLVLAMTLGVGA P29837 Small envelope protein M Langat virus (strain TP21) 0.008249827999999999 3 Homo sapiens LEVO VLIPSHAQRDLTGRGHQWLEGEAVKAHLTRVEGWVWKNKLFTLSLVMVAWLMVDGLLPRILIVVVALALAPAYA P29837 1-PALMITOYL-2-LINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 0.00075806 6 CPL singleParticle particle 8.0
VP-SFM growth medium, supplemented with rapamycin and glutamate.
 Quantifoil R1.2/1.3 COPPER 300 CARBON CONTINUOUS 2.0 GLOW DISCHARGE OTHER ETHANE LEICA EM GP FEI TALOS ARCTICA FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 0.6 1.6 150000.0 FEI FALCON III (4k x 4k) COUNTING 1 1430 40.0 1 15306 cryoSPARC PHASE FLIPPING AND AMPLITUDE CORRECTION Cryosparc Ab-Initio 2 I FOURIER SPACE 3.82 FSC 0.143 CUT-OFF cryoSPARC 12857 MAXIMUM LIKELIHOOD cryoSPARC MAXIMUM LIKELIHOOD cryoSPARC 2 6000.0 cryoSPARC emd_50624.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 756 756 756 0 0 0 756 756 756 733.32 733.32 733.32 90.0 90.0 90.0 X Y Z -0.1125385 1.9267309 0.004932732 0.047419827 0.97 0.97 0.97 0.04 AUTHOR Sharpened with deepEMchancer. AlphaFold in silico model FLEXIBLE FIT REAL emd_50624_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 756 756 756 0 0 0 756 756 756 732.56396 732.56396 732.56396 90.0 90.0 90.0 X Y Z -0.5517973 0.70862734 0.0015101436 0.06516994 0.969 0.969 0.969 AUTHOR emd_50624_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 756 756 756 0 0 0 756 756 756 732.56396 732.56396 732.56396 90.0 90.0 90.0 X Y Z -0.4236014 0.70501226 0.0015133615 0.06522823 0.969 0.969 0.969 AUTHOR