2024-11-13 REL PDBe PDBe PDBe 2024-06-11 2024-10-09 2024-10-09 2024-11-13 South African Medical Research Council self-initiated research grant (SAMRC SIR Grant) South Africa Chan Zuckerberg Initiative 2021-240494 United States Structure of a gp140 SpyTag-SpyCatcher mi3 nanoparticle including mi3 density only. Woodward JD Malebo K Chapman R Vaccine, HIV-1, mi3, Nanoparticle, VLP, IMMUNE SYSTEM Malebo K Woodward J Ximba P Mkhize Q Cingo S Moyo-Gwete T Moore PL Williamson AL Chapman R Development of a Two-Component Nanoparticle Vaccine Displaying an HIV-1 Envelope Glycoprotein that Elicits Tier 2 Neutralising Antibodies. Vaccines (Basel) CH 12 2024 39340093 doi:10.3390/vaccines12091063 2076-393X 9fo3 FULLOVERLAP CAP255 gp140 SpyTag-SpyCatcher mi3 nanoparticle CAP255 gp140 SpyTag-SpyCatcher mi3 nanoparticle 0 1
CAP255 gp140 SpyTag was expressed in HEK293T cells and purified. SpyCatcher mi3 was expressed in
Thermotoga maritima 4.75 CAP255 gp140 SpyTag-SpyCatcher mi3,2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase,2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase Thermotoga maritima 0.033894777
Model just contains mi3 cage component of NP. Note that SpyCatcher and gp140 are not included in the model.,Model just contains mi3 cage component of NP. Note that SpyCatcher and gp140 are not included in the model.,Model just contains mi3 cage component of NP. Note that SpyCatcher and gp140 are not included in the model.,Model just contains mi3 cage component of NP. Note that SpyCatcher and gp140 are not included in the model.
60 Escherichia coli BL21 LEVO HHHHHHGSGDSATHIKFSKRDEDGKELAGATMELRDSSGKTISTWISDGQVKDFYLYPGKYTFVETAAPDGYEVATAITF TVNEQGQVTVNGKATKGDAHIGGSGGSGGSGGSMKMEELFKKHKIVAVLRANSVEEAKKKALAVFLGGVHLIEITFTVPD ADTVIKELSFLKEMGAIIGAGTVTSVEQARKAVESGAEFIVSPHLDEEISQFAKEKGVFYMPGVMTPTELVKAMKLGHTI LKLFPGEVVGPQFVKAMKGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVKGTPVEVAEKAKAFVEKIRGCTE Q9WXS1 4.1.2.14 singleParticle particle 7.4 300.0 NaCl Sodium Chloride 25.0 C4H11NO3 Tris Quantifoil R2/2 COPPER 400 GLOW DISCHARGE AIR ETHANE 100 277 FEI VITROBOT MARK IV TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 0.5 5.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K3 (6k x 4k) 5760 4092 45.0 1
Stochastic Gradient Descent
 I 5.3 FSC 0.143 CUT-OFF 1439 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_50615.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 288 288 288 0 0 0 288 288 288 478.65598 478.65598 478.65598 90.0 90.0 90.0 X Y Z -0.02850201 0.077051066 0.00037828452 0.0035312169 1.662 1.662 1.662 0.0292 AUTHOR CAP255-gp140 SpyTag-SpyCatcher mi3 masked AlphaFold in silico model AB INITIO MODEL Cross-correlation coefficient REAL emd_50615_msk_1.map emd_50615_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 288 288 288 0 0 0 288 288 288 478.65598 478.65598 478.65598 90.0 90.0 90.0 X Y Z -0.017134247 0.045484927 0.0006379278 0.0032754608 1.662 1.662 1.662 AUTHOR emd_50615_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 288 288 288 0 0 0 288 288 288 478.65598 478.65598 478.65598 90.0 90.0 90.0 X Y Z -0.017837185 0.045710184 0.0006270679 0.003300527 1.662 1.662 1.662 AUTHOR