2025-01-22 REL PDBe PDBe PDBe 2024-06-11 2025-01-15 2025-01-15 2025-01-22 Ministry of Education, Youth and Sports of the Czech Republic LL2008 Czech Republic European Union (EU) LX22NPO5103 European Union Hassan AH Demo G Pyrococcus furiosus, ribosomal subunit, dimerization, anti-association, ribosome-associated protein, TRANSLATION Hassan AH Pinkas M Yaeshima C Ishino S Uchiumi T Ito K Demo G Nucleic Acids Res. UK 53 2025 39797736 doi:10.1093/nar/gkae1324 1362-4962 0389 NARHAD 9fny FULLOVERLAP PF30S-PF30S dimer facilitated by aRDF (Structure I) PF30S-PF30S dimer facilitated by aRDF (Structure I) 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 Pyrococcus furiosus 1.7 RNA-binding protein Pyrococcus furiosus 0.0068240079999999995 2 LEVO MVEMKFEIPVCTSCGREITPREHATHFICPNCGEAVIWRCESCRVLAKPYKCPNCGWEGP A0A5C0XRZ8 Small ribosomal subunit protein eS32 Pyrococcus furiosus 0.005023395 2 LEVO MKRRPRKWKKKGRMRWKWIKKRIRRLKRQRKKERGLI Q8U232 Archaeal Ribosome Dimerizing Factor (aRDF) Pyrococcus furiosus 0.034792625 4 Escherichia coli LEVO MKVVGIKGSVSYLQALKYLKTKKVTKRLKEIEKLVDTLITLAPYAPEGSKIETIRKNYAKISFNKIKTVSRSKIGSPRIK SIMLLLWNFGLLDVKIIENSWYVRKTKLASLLEENFKDLSPSEKLKVYLLGGLLVDTPARFVYRCTLNGVEDYKGVKKAI LGYLSDQRSNSLIIGLSNMLESIKFIEEAQAYSGKKEYIGLVDVAFYGLSGLYLDVKRESGKLTVKPNFRELRALYEIDK SVATGSDYGLSISKEILENLANTKRRKTIFSEEVQELLVNVIKENAISISQDLQNMYGIIHHHHHH Q8U3B0 Large ribosomal subunit protein eL8 Pyrococcus furiosus 0.013414664 2 LEVO MAKPSYVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYV PSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVKELMK Q8U160 16S rRNA Pyrococcus furiosus 0.4854555 2 AUUCCGGUUGAUCCUGCCGGAGGCCACUGCUAUGGGGGUCCGACUAAGCCAUGCGAGUCAAGGGGGCGUCCCUUCUGGGA CGCCACCGGCGGACGGCUCAGUAACACGUCGGUAACCUACCCUCGGGAGGGGGAUAACCCCGGGAAACUGGGGCUAAUCC CCCAUAGGCCUGGGGUACUGGAAGGUCCCCAGGCCGAAAGGGAGCCGUAAGGCCCGCCCGAGGAUGCGGCGGCGGCCGAU UAGGUAGUUGGUGGGGUAACGGCCCACCAAGCCGAAGAUCGGUACGGGCCGUGAGAGCGGGAGCCCGGAGAUGGACACUG AGACACGGGUCCAGGCCCUACGGGGCGCAGCAGGCGCGAAACCUCCGCAAUGCGGGAAACCGCGACGGGGGGACCCCCAG UGCCGUGCCUCUGGCACGGCUUUUCCGGAGUGUAAAAAGCUCCGGGAAUAAGGGCUGGGCAAGGCCGGUGGCAGCCGCCG CGGUAAUACCGGCGGCCCGAGUGGUGGCCACUAUUAUUGGGCCUAAAGCGGCCGUAGCCGGGCCCGUAAGUCCCUGGCGA AAUCCCACGGCUCAACCGUGGGGCUCGCUGGGGAUACUGCGGGCCUUGGGACCGGGAGAGGCCGGGGGUACCCCCGGGGU AGGGGUGAAAUCCUAUAAUCCCGGGGGGACCGCCAGUGGCGAAGGCGCCCGGCUGGAACGGGUCCGACGGUGAGCGCGGA AGGCCAGGGGAGCGAACCGGAUUAGAUACCCGGGUAGUCCUGGCUGUAAAGGAUGCGGGCUAGGUGUCGGGCGAGCUUCG AGCUCGCCCGGUGCCGUAGGGAAGCCGUUAAGCCCGCCGCCUGGGGAGUACGGCCGCAAGGCUGAAACUUAAAGGAAUUG GCGGGGGAGCACUACAAGGGGUGGAGCGUGCGGUUUAAUUGGAUUCAACGCCGGGAACCUCACCGGGGGCGACGGCAGGA UGAAGGCCAGGCUGAAGGUCUUGCCGGACGCGCCGAGAGGAGGUGCAUGGCCGCCGUCAGCUCGUACCGUGAGGCGUCCA CUUAAGUGUGGUAACGAGCGAGACCCGCGCCCCCAGUUGCCAGUCCCUCCCGCUCGGGAGGAGGCACUCUGGGGGGACUG CCGGCGAUAAGCCGGAGGAAGGGGCGGGCGACGGUAGGUCAGUAUGCCCCGAAACCCCCGGGCUACACGCGCGCUACAAU GGGCGGGACAAUGGGACCCGACCUCGAAAGGGGAAGGGAAUCCCCUAAACCCGCCCUCAGUUCGGAUCGCGGGCUGCAAC UCGCCCGCGUGAAGCUGGAAUCCCUAGUACCCGCGUGUCAUCAUCGCGCGGCGAAUACGUCCCUGCUCCUUGCACACACC GCCCGUCACUCCACCCGAGCGGAGUCCGGGUGAGGCCUGAUCUCCUUCGGGAGGUCAGGUCGAGCCCGGGCUCCGUGAGG GGGGAGAAGUCGUAACAAGGUAACCGUAGGGGAACCUACGGCUCGAUCACCUCCU Small ribosomal subunit protein uS2 Pyrococcus furiosus 0.023039861 2 LEVO MADEYLVPLDQYLAAGVHIGTQQKTKDMKKFIYRVRQDGLYVLDVRKTDERLKVAGKFLAKFEPQSILAVSVRLYGQKPV KKFGEVTGARAIPGRFLPGTMTNPAVKNFFEPDVLIVTDPRADHQAMREAVEIGIPIVALVDTENLLSYVDLAIPTNNKG RKALALIYWILAREILYNRGEIQSREDFKIPVEEFEMKIVRR Q8U0F0 Small ribosomal subunit protein uS3 Pyrococcus furiosus 0.023464351999999997 2 LEVO MAIERYFIREAVREMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILEKQFGLENPQI EVEEIKNPYLNAKVQAVRLAQALERGIHFRRAAYAALRAIMNNGARGVEIRLSGKLTGERAKSIRFYQGYLAKVGNPAET LVSKGYAQALLKLGVIGVKVAIMPPGARLPDEIEIIEKPVEEEVVSNEAE Q8U004 Small ribosomal subunit protein eS1 Pyrococcus furiosus 0.022984107 2 LEVO MAAKRATTTRDKWKLKQWYIIYAPDFFGGVEVGLTPADDPEKVLNRVVEVTLKDVTGDFTKSHVKLYFQVYDVKGQNAYT KFKGMKLARSYIRSLVRRKTTRIDGIFNITTKDGYKLRVMAMAIAMRRIQTSQERAIRKIMQEIIYKKAEELNFKDFVLE SVNGKIAAEIAKEAKKIYPLRKAEIRKIKVLEEPQVIA Q8TZE1 Small ribosomal subunit protein uS4 Pyrococcus furiosus 0.02138191 2 LEVO MGDPKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAEIEREQLLARLKRL GLLPEDAVLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF ANPQHPERMMIEKAKQGGEA P61993 Small ribosomal subunit protein eS4 Pyrococcus furiosus 0.028197022999999998 2 LEVO MARKGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKD YKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEDEAFIKPLRIRNKRMIKGARVQLNFHDGTNHIVSIAEKDNYFT SYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVTIEDEEGELFDTLKEYAFVVGTDKPKI SLP Q8U011 Small ribosomal subunit protein uS5 Pyrococcus furiosus 0.026590891 2 LEVO MSQEWKEYAKRVLDEWEPKTKLGMMVKEGQITDIHEIFRRGYQIKEPEIIDVLLPEVNARENQEVLDIALTVRMTDSGRR VRFRVLAAVGNRDGYVGLGIGHGKEVGIAIRKAINYAKLNIIEIKRGCGSWECRCRRPHSVPFAVEGKEGSVRVRLIPGP RGLGLVIGDVGKKILRLAGVQDVWSQTFGETRTTVNFAKAVFNALYNTNRVAISPEMIERYGIVVGRAMPTTFTLE Q8U017 Small ribosomal subunit protein eS6 Pyrococcus furiosus 0.014002329999999999 2 LEVO MATFKLVISDPKSGIAKQVEITGAETEKLIGKRIGDQIPAKELNINLNELFGKEFPEDVKLEIRGGTDKDGFPMRPDIHG PRRVRVLLSKGPGFRPKEKGERRKKTVRGNTISPEIVQVNVKLVY Q8U3H8 Small ribosomal subunit protein uS7 Pyrococcus furiosus 0.024701791 2 LEVO MAKPLNERFFIPHEIKVMGRWSTEDVEVRDPSLKPYINLEPRLLPHTHGRHAKKHFGKANVHIVERLINKIMRSGGSHYK VAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEQRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDV ALRNIALGASAKCYRNKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR Q8U0M8 Small ribosomal subunit protein uS8 Pyrococcus furiosus 0.014684174 2 LEVO MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGVYRVQLLGRINKAGAIKPRFP VKVSEFEKWEKRFLPAFEFGILIVSTSQGVMSHKEAIEKGIGGRLIAYVY Q8U014 Small ribosomal subunit protein eS8 Pyrococcus furiosus 0.014293733 2 LEVO MAIWQGRSLKKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNRKVRLTAAAYANVFDKSGKGRKVRIIRV IENPANRQFARRNIITKGAIIETEIGKAKVTSRPGQDGVVNAILLEE Q8U1Y5 Small ribosomal subunit protein uS9 Pyrococcus furiosus 0.015317932 2 LEVO MRIIQTTGKRKTAIARAVIREGKGRVRINGKPVEIIEPEIARFTILEPLILAGEEIWNSVDIDVKVEGGGFMGQAEAARM AIARALVEWTGDMSLKEKFMKYDRTMLVGDPRRTEPHKPNRSTKGPRAKRQKSYR Q8U0E7 Small ribosomal subunit protein uS10 Pyrococcus furiosus 0.011769689 2 LEVO MQKARIKIASTNVRSLDEVANQIKQIAERTGVRMSGPIPLPTKRIRITTRKSPDGEGSATFDRWELRVHKRLIDIEADER AMRQIMRIRVPEDVTIEIELIS P61885 Small ribosomal subunit protein uS11 Pyrococcus furiosus 0.01475695 2 LEVO MSEEQVNIKKKEKWGIAHIYSSFNNTIIHITDITGAETISRWSGGMVVKADRDEPSPYAAMLAARRAAEEALEKGIVGVH IRVRAPGGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGTRPKGGRRGRRV Q8U0E3 Small ribosomal subunit protein uS12 Pyrococcus furiosus 0.016477620999999998 2 LEVO MPGKKAPNGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKN GKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPRR P61995 Small ribosomal subunit protein uS13 Pyrococcus furiosus 0.016948903999999997 2 LEVO MANFRHIVRVAGVDLDGNKQLRWALTAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILADPVAHGIPRWAVN RPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRGQRTRSNFRRGQTVGVSRKKK Q8U0E2 Small ribosomal subunit protein uS14 Pyrococcus furiosus 0.006634046 2 LEVO MAKADYNKRKPRKFGKGARRCIRCGQYGPIIRIQGLMLCRHCFREVAPKLGFRKYE Q8U013 Small ribosomal subunit protein uS15 Pyrococcus furiosus 0.018640025 2 LEVO MARMHARKRGKSGSKRPPRTAPPIWVEYTVEEIENLVVKLRKEGYSTAMIGTILRDQYGIPSVKLFKDPDNPNRNLTITR ILEKHGLAPEIPEDLMFLIRRAVNLRKHLEQHPKDLHSMRGLQLIESKIRRLVKYYKRKGKLPKNWRYDPETAKLLVR Q8TZD9 Small ribosomal subunit protein uS17 Pyrococcus furiosus 0.013296521 2 LEVO MMRDIGLRVQPPAEKCDDPKCPWHGNLKIHGRVFEGIVVSDKPRKTVTVERQYYFYLNKYERYELRRSKIHAHNPPCINA KVGDKVLIAETRPLSKTKHFVVVAVLERAEERR Q8U008 Small ribosomal subunit protein eS17 Pyrococcus furiosus 0.007942465 2 LEVO MGKIRQGFIKRVARELVNKYPNEFTTDFEHNKKKVQELTNVTSKKIRNRIAGYVTKLVRMKMEGKIL Q8U0U1 Small ribosomal subunit protein uS19 Pyrococcus furiosus 0.015357398999999999 2 LEVO MARKEFRYRGYTLEQLMNMSLEELARLFPARQRRSLKRGLTPEQKKLLRKIRLAKKGKYKKPIRTHCRDMIILPEMVGLT IYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKKVEHGAPGVGATRSSMFVAVK Q8U002 Small ribosomal subunit protein eS19 Pyrococcus furiosus 0.017394236 2 LEVO MATVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRVYLDGPVGIERLRTYYGGR KNRGHAPEKFYKAGGSIIRKALQQLEAAGFVEKVPGKGRVITPKGRSFLDKIATELKKELEEIIPELKKY Q8U0T4 Small ribosomal subunit protein eS24 Pyrococcus furiosus 0.011698564 2 LEVO MEIRIKEIKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYISKGYAKAYDSKERMLY IEPEYILIRDGLIEKKEGE Q8U442 Small ribosomal subunit protein eS31 Pyrococcus furiosus 0.005864957999999999 2 LEVO MGQKWKLYEIKDGKVIRKNKFCPRCGPGVFMADHGDRWACGKCGYTEWKK Q8U443 Small ribosomal subunit protein eS27 Pyrococcus furiosus 0.006888388 2 LEVO MAKPIIPMPRSRFLRVKCIDCGNEQIVFSHPATKVRCLICGATLVEPTGGKGIVKAKILEVLE Q8U474 Small ribosomal subunit protein eS28 Pyrococcus furiosus 0.008116332 2 LEVO MAEDEGYPAEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRIGDILILRETEREAREIKSRR Q8U159 singleParticle particle 7.0 20.0 HEPES-KOH HEPES-KOH 12.0 MgCl2 magnesium chloride 100.0 NH4Cl amonium chloride 0.5 EDTA EDTA Quantifoil R2/1 COPPER 300 PLASMA CLEANING 40 ETHANE-PROPANE 95 277.6 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 0.8 1.8 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K3 (6k x 4k) 1 11033 40.0 1 792586 4V6U C1 3.2 FSC 0.143 CUT-OFF FREALIGN 9.11 113596 ANGULAR RECONSTITUTION FREALIGN 9.11 ANGULAR RECONSTITUTION FREALIGN 9.11 6 FREALIGN 9.11 4V6U PDB experimental model 7ZHG PDB experimental model ITasser in silico model OTHER REAL emd_50611_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 576 576 576 0 0 0 576 576 576 480.384 480.384 480.384 90.0 90.0 90.0 X Y Z -9.460291 16.118003999999999 -0.006608601 0.7479736 0.834 0.834 0.834 AUTHOR ::::EMDATABANK.org::::EMD-50611:::: emd_50611_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 576 576 576 0 0 0 576 576 576 480.384 480.384 480.384 90.0 90.0 90.0 X Y Z -8.812889999999999 16.685137000000001 -0.0069102794 0.7515095 0.834 0.834 0.834 AUTHOR ::::EMDATABANK.org::::EMD-50611::::