2025-04-02 REL PDBe INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY DATABASE_REFERENCES citation citation_author em_admin _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _em_admin.last_update EXPERIMENTAL_SUMMARY citation citation_author em_admin _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _em_admin.last_update DATABASE_REFERENCES citation em_admin _citation.journal_volume _citation.page_first _em_admin.last_update PDBe PDBe 2024-05-16 2025-02-12 2025-02-12 2025-04-02 Not funded Cas nuclease-CRISPR (cr)RNA ribonucleoprotein (RNP) complex Schmelz S Lukat P Blankenfeldt W AcrVIB1; anti-CRISPR protein; Cas13b, RNA BINDING PROTEIN Wandera KG Schmelz S Migur A Kibe A Lukat P Achmedov T Caliskan N Blankenfeldt W Beisel CL AcrVIB1 inhibits CRISPR-Cas13b immunity by promoting unproductive crRNA binding accessible to RNase attack. Mol.Cell US 85 1162 2025 39965569 doi:10.1016/j.molcel.2025.01.020 1097-2765 2168 MOCEFL Liebschner D Afonine PV Baker ML Bunkoczi G Chen VB Croll TI Hintze B Hung LW Jain S McCoy AJ Moriarty NW Oeffner RD Poon BK Prisant MG Read RJ Richardson JS Richardson DC Sammito MD Sobolev OV Stockwell DH Terwilliger TC Urzhumtsev AG Videau LL Williams CJ Adams PD Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix Acta Crystallogr., Sect. D: Biol. Crystallogr. DK 75 861 877 2019 31588918 doi:10.1107/S2059798319011471 0907-4449 0766 ABCRE6 9fcv FULLOVERLAP Cas13b (cr)RNA complex Cas13b (cr)RNA complex 0 1 2 Segatella buccae Phage head-tail adaptor Segatella buccae 0.134285938 1 Escherichia coli BL21(DE3) LEVO MQKQDKLFVDRKKNAIFAFPKYITIMENKEKPEPIYYELTDKHFWAAFLNLARHNVYTTINHINRRLEIAELKDDGYMMG IKGSWNEQAKKLDKKVRLRDLIMKHFPFLEAAAYEMTNSKSPNNKEQREKEQSEALSLNNLKNVLFIFLEKLQVLRNYYS HYKYSEESPKPIFETSLLKNMYKVFDANVRLVKRDYMHHENIDMQRDFTHLNRKKQVGRTKNIIDSPNFHYHFADKEGNM TIAGLLFFVSLFLDKKDAIWMQKKLKGFKDGRNLREQMTNEVFCRSRISLPKLKLENVQTKDWMQLDMLNELVRCPKSLY ERLREKDRESFKVPFDIFSDDYNAEEEPFKNTLVRHQDRFPYFVLRYFDLNEIFEQLRFQIDLGTYHFSIYNKRIGDEDE VRHLTHHLYGFARIQDFAPQNQPEEWRKLVKDLDHFETSQEPYISKTAPHYHLENEKIGIKFCSAHNNLFPSLQTDKTCN GRSKFNLGTQFTAEAFLSVHELLPMMFYYLLLTKDYSRKESADKVEGIIRKEISNIYAIYDAFANNEINSIADLTRRLQN TNILQGHLPKQMISILKGRQKDMGKEAERKIGEMIDDTQRRLDLLCKQTNQKIRIGKRNAGLLKSGKIADWLVNDMMRFQ PVQKDQNNIPINNSKANSTEYRMLQRALALFGSENFRLKAYFNQMNLVGNDNPHPFLAETQWEHQTNILSFYRNYLEARK KYLKGLKPQNWKQYQHFLILKVQKTNRNTLVTGWKNSFNLPRGIFTQPIREWFEKHNNSKRIYDQILSFDRVGFVAKAIP LYFAEEYKDNVQPFYDYPFNIGNRLKPKKRQFLDKKERVELWQKNKELFKNYPSEKKKTDLAYLDFLSWKKFERELRLIK NQDIVTWLMFKELFNMATVEGLKIGEIHLRDIDTNTANEESNNILNRIMPMKLPVKTYETDNKGNILKERPLATFYIEET ETKVLKQGNFKALVKDRRLNGLFSFAETTDLNLEEHPISKLSVDLELIKYQTTRISIFEMTLGLEKKLIDKYSTLPTDSF RNMLERWLQCKANRPELKNYVNSLIAVRNAFSHNQYPMYDATLFAEVKKFTLFPSVDTKKIELNIAPQLLEIVGKAIKEI EKSENKN E6K398 crRNA synthetic construct 0.025895355
unprocessed crRNA
1 CGUCGCCGUCCAGCUCGACCAGGAUGGGAAGUUGCAUCUGCCUUCUUUUUGAAAGGUAAAAACAACAUCGUCCAUUCCGA C singleParticle particle 1 7.0
20mM HEPES pH7.0 120 mM NaCl 0.5 mM DTT
 Quantifoil R1.2/1.3 COPPER 200 GLOW DISCHARGE AIR
15 mA
 ETHANE 100 283 FEI VITROBOT MARK IV
for complex formation PubCas13b (1mg/ml) was mixed with crRNA in a ratio of 1:0.9 and kept on ice for 10 min prior vitrification.
 TFS GLACIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 50.0 2.7 0.6 2.0 NITROGEN TFS Selectris 10 EPU 3.3.1.5184 TFS FALCON 4i (4k x 4k) 3778 40.0 1
insilco model generated with cryoSPARC in C1
 3.09 FSC 0.143 CUT-OFF cryoSPARC v4.4.0 356629 MAXIMUM LIKELIHOOD cryoSPARC v4.4.0 MAXIMUM LIKELIHOOD cryoSPARC v4.4.0 emd_50322.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 232.96 232.96 232.96 90.0 90.0 90.0 X Y Z -0.6607462 1.0835227 -0.000009755981 0.024294013 0.91 0.91 0.91 0.04 AUTHOR 6DTD PDB experimental model UCSF ChimeraX 1.71 emd_50322_msk_1.map emd_50322_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 232.96 232.96 232.96 90.0 90.0 90.0 X Y Z -0.08612036 0.21771501 0.00024844732 0.008749038 0.91 0.91 0.91 AUTHOR emd_50322_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 232.96 232.96 232.96 90.0 90.0 90.0 X Y Z -0.080497496 0.21095604 0.0002491144 0.008737031 0.91 0.91 0.91 AUTHOR