2026-09-02 REL PDBe INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY STRUCTURE_SUMMARY em_admin entity _em_admin.last_update _entity.formula_weight REMEDIATION REPOSITORY Metalloprotein remediation STRUCTURE_SUMMARY chem_comp chem_comp_atom chem_comp_bond em_admin entity pdbx_modification_feature pdbx_nonpoly_atom_coordination pdbx_nonpoly_atom_coordination_sphere pdbx_nonpoly_atom_coordination_sphere_order pdbx_struct_conn_angle pdbx_validate_chiral struct_conn _chem_comp.formula _chem_comp.formula_weight _em_admin.last_update _entity.formula_weight PDBe PDBe 2024-04-30 2025-03-12 2025-03-12 2026-09-02 Alexander von Humboldt Foundation Germany Swiss National Science Foundation 210561 Switzerland Waltz F Righetto R Kotecha A Engel BD respirasome, alga, respiration, mitochondria, MEMBRANE PROTEIN Waltz F Righetto RD Lamm L Salinas-Giege T Kelley R Zhang X Obr M Khavnekar S Kotecha A Engel BD Science US 387 1296 1301 2025 40112058 doi:10.1126/science.ads8738 1095-9203 0038 SCIEAS EMD-50216 other EM volume EMD-50215 other EM volume EMD-50214 other EM volume EMD-50211 other EM volume 9f62 FULLOVERLAP EMDB EMD-50210 associated EM volume

Subtomogram average of the Chlamydomonas reinhardtii mitochondrial respirasome I2 III4 IV6

EMDB EMD-50216 other EM volume EMDB EMD-50215 other EM volume EMDB EMD-50214 other EM volume EMDB EMD-50211 other EM volume Chlamydomonas reinhardtii Chlamydomonas reinhardtii 0 Chlamydomonas reinhardtii CC-3994 mat3-4 mt+ Cytochrome b Chlamydomonas reinhardtii 0.042356464999999996 4 LEVO MRMHNKIQLLSVLNTHLVAYPTPMNLNYSWNGGSLAGMMLASQMLTGILLAMHYVGHVDYAFASVQHLMTDVPSGMILRY AHANGASLFFIVVYLHVLRGMYYGSGAQPREIVWISGVVILLVMIITAFIGYVLPWGQMSFWGATVITSLATAIPVVGKH IMYWLWGGFSVDNPTLNRFYSFHYTLPFILAGLSVFHIAALHQYGSTNPLGVNSQSSLISFGSYFGAKDLVGALFLALVF SILVFFYPDLLGHPDNLIPANPYSTPQHIVPEWYFLWVYAILRSIPNKAMGVLAIGLVFASLFAMPFIGLGGGKFRIITE WLYWTFLADVLLLTWLGGNEITPITSFVGQCCTAYLFFYLLVCQPLVGYLETQFAHGTQTN P23662 Cytochrome b-c1 complex subunit Rieske, mitochondrial Chlamydomonas reinhardtii 0.028545493999999998 4 LEVO MALRRAVASFLPKLAGAAETLPAASHAASSFSQLICTPLDVVERQQQPSGFRSFASDAVEVFKPETGLTPTNRLSMAPTP YIKYDEHNHKRFPPGTEGRPFAYFVQTGGRFLYASAARLAVLKIVMSLSAAADTMALSSLEVDLSGVEEGTTITVKWRGK PVFIRHRTDAEIAQSAEVALSELRDPQKDVDRAINPKYLVVVGICTHLGCVPISGAGNYQGWFCPCHGSHYDISGRIREG PAPYNLEVPEYRFTEGQKVVIG Q8HEB4 7.1.1.8 Cytochrome c1 Chlamydomonas reinhardtii 0.033868195 4 LEVO MRTSLLRSLGKGLGLCAEATSSRVAQQTMPAVAAMSTSASDAEPTSKAAHYAAALGGVMAGIFGASCVASANEAADGLHA PHYPWGHEGVLDSYDHAAIRRGHKVYQQVCAACHSMQYLHWRQLVGVCYTEEEAKALAAETEVEDGPNDEGEMFTREGRL FDAFPSPYANEQAARYANGGAYPPDLTLISGGRHNGPNYIFSLLTGYRDPPAGISIREGLYYNPYFPGGAIAMPKMLVDG GVEYEDGTPASASQQAKDITTFLAWASYPYQDEMRVMGIKACLMISILIGFAAYSKRLRWAPIKSQRIVMDVVN Q9FQ96 1.10.2.2 Complex III subunit 9 Chlamydomonas reinhardtii 0.007040211 4 LEVO MVMRLSEALYQTFFKRSTVYIPMLLVGAYFSNEAIDYAVDKMWTTRNKGKLFSDIIAERT A8JC51 Cytochrome b-c1 complex subunit 6 Chlamydomonas reinhardtii 0.007991032 4 LEVO MVEYTEDDPKPQIEEDCKPHCVKEWAAYKACAERIKDDTTGQAHCSGQYFDFWKCVDHCAAPKIFAHLK A8J8N9 Mitochondrial ubiquinol-cytochrome c oxidoreductase subunit 8 Chlamydomonas reinhardtii 0.008678994 4 LEVO MAPRQNIPLREILYQLSPYQQDVIRQTFTNAPKTFLRFFKEKGVGLATFGVLFFGIKGYTEHEMHQERLAERY A8J7I9 1.10.2.2 MPP-Beta Chlamydomonas reinhardtii 0.055121214999999994 4 LEVO MRSLKQILRIGEASSLGLRAFGSAAKDVVATDANPFLRFSNPRPSPIDHTPLLSTLPETRITTLPNGLRVATEAIPFAET TTLGIWINSGSRFETDANNGVAHFLEHILFKGTKNRSVKELEVEVENMGGQLNAYTGREQTCYYAKVMGKDVGKAVNILS DILLNSNLDARAIDKERDVILREMEEVNKQTSELVFDHLHATAFQYSPLGRTILGPVENIKSINRDQLVEYMKTHYRGPR MVLAAAGAVNHDELVKLASDAFGSVPDEDAATSVRSLLVKEPSRFTGSYVHDRFPDASECCMAVAFKGASWTDPDSIPLM VMQTMLGGWDKNSTVGKHSSSALVQTVATEGLADAFMAFNTNYHDTGLFGVYGVTDRDRSEDFAYAIMSNLTRMCFEVRD ADVARAKNQLKASLMFFQDSTHHVAESIGRELLVYGRRIPKAEMFARIDAVDANAIRAVADRFIYDQDMAVASAGDVQFV PDYNWFRRRSYWLRY A8J5P7 Mitochondrial ubiquinol-cytochrome c oxidoreductase subunit 10 Chlamydomonas reinhardtii 0.006476587999999999 4 LEVO MPIGVWSVFQGYVTPARLPSIQTLTRVGAWGGVVVVGGLYMVQPWDWLAVQAGLKKEEK A8J4K5 1.10.2.2 Alpha-MPP Chlamydomonas reinhardtii 0.04964043 4 LEVO MLGSSTSQLAPAMVRSIASSAAASTAAPVLAAKSGGLLASVFGMGGGRVEVPLSEKLPAVTEPPRTSTPATKPIVQTSSL RSGVKVASINTVSPISSLVLFVEGGAAAETPATAGASKVLEVAAFKATANRSTFRLTRELEKIGATSFARAGRDHVAFGV DATRLNQLEALEILADAVVNARYTYWEVRDSLDAVKEQLAAQLRNPLTAVNEVLHRTAFEGGLGHSLVVDPSVVDGFTNE TLKEYVHSIMAPSRVVLAASGVDHAELTALATPLLNLHGNAHPAPQSRYVGGAMNIIAPTSSLTYVGLAFEAKGGAGDIK SSAAASVVKALLDEARPTMPYQRKEHEVFTSVNPFAFAYKGTGLVGVVASGAPGKAGKVVDALTAKVQSLAKGVTDVQLA TAKNMALGELRASVATAPGLAAAVGSSVLATGKFSANEVAAALSGLTAADVTSYVNAMIKTAPTFVTYGNLSSLPRVDSI AKRFA A8IKI9 Cytochrome b-c1 complex subunit 7 Chlamydomonas reinhardtii 0.014062162 4 LEVO MTSLLKQVALPVFNSLATTYRSVVGAKLAKYGLRFDDLQDPLKDEDVAEALRRLPPDVVVARNCRLRRALDLSCKHEALP KDLLEKQTPELSYLQDVLNEVRAERRERAQLGAPAPYTRIYYD A8HX89 Cytochrome c oxidase subunit 1 Chlamydomonas reinhardtii 0.055194917999999996 6 LEVO MRWLYSTSHKDIGLLYLVFAFFGGLLGTSLSMLIRYELALPGRGLLDGNGQLYNVIITGHGIIMLLFMVMPALFGGFGNW LLPIMIGAPDMAFPRLNNISFWLNPPALALLLLSTLVEQGPGTGWTAYPPLSVQHSGTSVDLAILSLHLNGLSSILGAVN MLVTVAGLRAPGMKLLHMPLFVWAIALTAVLVILAVPVLAAALVMLLTDRNINTAYFCESGDLILYQHLFWFFGHPEVYI LILPAFGIVSQVVSFFSQKPVFGLTGMICAMGAISLLGFIVWAHHMFTVGLDLDTVAYFTSATMIIAVPTGMKIFSWMAT IYSGRVWFTTPMWFAVGFICLFTLGGVTGVVLANAGVDMLVHDTYYVVAHFHYVLSMGAVFGIFAGVYFWGNLITGLGYH EGRAMVHFWLLFIGVNLTFFPQHFLGLAGMPRRMFDYADCFAGWNAVSSFGASISFISVIVFATTFQEAVRTVPRTATTL EWVLLATPAHHALSQVPVLRTASSH P08681 7.1.1.9 Cytochrome c oxidase polypeptide II Chlamydomonas reinhardtii 0.030716742 6 LEVO MLRQSGLSANKLFCSNLLQSQQKEGNKLVWNAMLFSSKAEGSAVQQVVASEGVAQAVPQFSSEAAAALAAKRRGLIGSGM SLAPSKPFAARGLTSAAKPAAAAAAGAAEAAQPADKYAGLKKVLKAAAALAAALGLTTTTAAADSPQPWQLLFQDTATST AQAMIDLHHDIFFFLITVVTLVFYMMFQIITKFHYSKVLKPEKLTHHTTMEVIWTIIPTLIVVMIAIPSLTLIYSLDQHT ERPGLTVKIIGRQWYWSYEMHDHLQHKLLDPDRLVGIAEKALVK Q9AU05 cytochrome-c oxidase Chlamydomonas reinhardtii 0.017270035 6 LEVO MSESKDQLKEKLKADPSFRAELKDRIKNALLSKVPASVPISYNFDSYMLTEVQPGQLRVLEVDERLVLPTNTLIRLLVTA SDVLHSWAVPALGVKMDAVPGRLNQVWMSINREGVFYGQCSELCGANHSFMPIVVEAISPRQFLTEYVKKWIS Q9AU02 7.1.1.9 Cytochrome c oxidase subunit 3 Chlamydomonas reinhardtii 0.041453922 6 LEVO MRSQLLRFLTRAPAGFSQEGLQALRAGLTSGEASGLLQSSAFGRQNESAAPRGLGFGKMALPLSFQGHLMSTLASANGDD KKEPTTGALAQQPQVPNALAALPPRGTRTMGSHAAGHQTAKEFYMEHIGKRHPFHVLPPSPWPMLAGWGTYVSCLGMAAW FHNMPTGGALMAFGMANIAWTAITWWRDCAIEGDMGMHTEVVRKNFISGMWAFIVSEALLFVGLLWACLHLGMSPSVALQ MQWPPVGIEPIGWDKRALVMSAVLAASYYSANVAMVAKDPKVVMGALATTIGLGAMFLADQYLEYNETPFTITDSPYGTT FFVTTGFHGMHVLLGSLYLTAALMMYKRTHNAGAALKSSILYWHFVDIVWIAVYGIIYVGQY Q9FV97 Cox5b Chlamydomonas reinhardtii 0.019051587999999998 6 LEVO MNRLGALSGLLARAARTCSRRWATAASGVPAELSAVGIVGQEFAAQARSLHTSLTTCQGAPAEAKPSALSAEPPRKYRPL GDKELWHEAWMYEDKFGTEEDPIIVPSLEAERIIGVTDPEDETLVVWGILKDGEPPRQFVENGEFYVLKHVEYIKKVGDV LEAIEGGADKAKIAK A8HRZ4 Cox5c Chlamydomonas reinhardtii 0.010886307 6 LEVO MSQAPATAASKAVYAPSEYFKYGEGASKHFGFAKHVAIAMTVGLGLSFAWKTWHWNEKRYIAQYYADMARREAREDAARK SALADKYKQLEEELLS A8J7H8 Cox6a Chlamydomonas reinhardtii 0.013985016 6 LEVO MQALRRAVSTAMPGFRRASTTAGETIDKYWAPYFPKPAVTADEAKKSVNKEMVGFMLLGPVGVAFMLYDFAVGLEEEHHV TIPPYPWMRIRRLPGMPWGQDGLFEGHPRVATTWPPEEGAADSHH A0A2K3D591 Cox6b Chlamydomonas reinhardtii 0.017277315999999997 6 LEVO MGLFNYFVARADAEVVEEEHAPPPPPPPPKKSSRKPTLESLSADELEELKNEVVSEVVDKIAGEDGTKLADFLEPELITA PYDPRFPNRNQARHCFVRFNEYYKCLYERGEEHPRCQFYQKAYQSLCPSEWVESWQELREKGLWTGKY A8IN92 Cox7c Chlamydomonas reinhardtii 0.011356864999999999 6 LEVO MSSALRRLSQQAPRLTRGLKTGNVTKGGAEKYSHEEVVYGDGHHGLRKGYTYDFEHGPHYLQPEKIPNFWSKFYAGTGAL YAVGLGVPLFAVWWQQSKLKA A8IU42 Cytochrome c oxidase subunit Chlamydomonas reinhardtii 0.011694373999999999 6 LEVO MARAQIERWAAEHPTAPRVGRIFEVPLGYVVPRVAAGIAAAGCLWYMNNTFLQTYRPESLSKEFLEEQAKIGEVAQRMNA PPVYLNPFTNRIPGSILGPEDAKPE Q8LK22 Cox7a Chlamydomonas reinhardtii 0.00653242 6 LEVO MFPSRALKAAADSYKATDFTNPKYNYFFRELTARVQGVLLTGGSLYGTWLVVFGEAQR A0A2K3D1M1 CoxIn Chlamydomonas reinhardtii 0.009905305 6 LEVO MPLPFKLPLDAYILMLPITYASAAFVAMCCRVPTADPETSSIAYYEDEQKSAAAAQRYDNSFKQFFDARIRNHKVGVFQN WMPNSPQ A8JEU7 NADH:ubiquinone oxidoreductase 24 kD subunit Chlamydomonas reinhardtii 0.030643971 2 LEVO MLSRALLLAGRLAATGQQQAASTSSRAVQPLGSLLQRCNFATNSTDIFNIHKDTPENNAATSFEFSEATLKVVNDIIARY PPNYKQSAIIPVLDVTQQENGGWLSLAAMNRVAKLLDMAPIRVYEVATFYTMFNRTKIGKYHVQICGTTPCRLQGSQKIE EAITKHLGIGIGQTTQDGLFTLGEMECMGACVNAPMVAIADYTKGVSGFEYIYYEDLTPKDIVNILDTIKKGGKPKPGSQ YRLKAEPAGAVHGGEKWVPKDGETTLTGAPRAPYCRDLNATA Q6V9B3 1.6.5.3 NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial Chlamydomonas reinhardtii 0.05230310899999999 2 LEVO MQRTGGLVSQLAGAQLTGALQELKTGVLLAFSTAAPAAGAPPPPPPPPAKTSFGGLKDEDRIFQNIYGRHDLSIKGAMSR GDWYMTKEIIGKGRDWIIDQMKKSGLRGRGGAGFPSGLKWSFMPKASDGRPSYLVVNGDESEPGTCKDREIMRHEPHKLV EGCLMAGVAMGARAGYIYIRGEFVQERRAVERAISEAYAKGFLGKNACGSGVDFDLMVHYGAGAYICGEETALIESLEGK QGKPRLKPPFPAGVGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNAGTKLFCISGHVNRPVTVEEEMSIPLKEL IERHAGGVRGGWDNLLAIIPGGSSVPLLPKKICDGVLMDFDALKEAQSGLGTAAVIVMDKSTDVIDAIARLSYFYKHESC GQCTPCREGTGWLYDIMTRMKKGDARLEEIDMLWEITKQIEGHTICALGDAAAWPVQGLIRHFRGEMEERIKSAGGKKKL AATA A8ICJ1 7.1.1.2 NADH:ubiquinone oxidoreductase 78 kDa subunit Chlamydomonas reinhardtii 0.07843268799999999 2 LEVO MSARRALTLAQPLTGLWPGAQEFARSISTSVGALSGPPPPPPPPPPPSDHLEVFVNEQPVKIPKGSSVLQACDAAGIDIP RFCYHQRLSIAGNCRMCLVEVEKVPKPVASCAMPAGPGMKIKTETPMVKKAREGVMEFLLINHPLDCPICDQGGECDLQD QAMIFGSDRSRFVEAKRAVEDKNLGPLVKTVMTRCIQCTRCVRFASEVAGTAELGVTGRGRDSEIGTYVEKLMGSELSGN VVDLCPVGALTSKPYAFTARSWELKGTESIDVSDGLGANIRVDARGTEVMRILPRLNEAVNEEWLSDKGRYQYDGLKHQR LDKPMVKGPKGLQVATWQDALGAAAAALTSAAPGEVRGIAGKLADAESMVALMDLLRGLGAGDLAHEGGFSDMPADVRST YTANTTVQGLEQSDLVLLVGTNPRWESPVFNARLRKMFLDGTQVGLVGAPVDLTYKYEHVGSDPAALAALAAGQHPFLER LKKAARPAVVVGPGVLRRADREAVMKAVHELCGKAGVVKEGWNGFNVIHDTASRVAALDMGFGPSAAARARRAQGAQPKV VYLLGSDDYSEEDVPEGAFVIYQGHHGDRGASRANVVLPGAAYTEKSGLYVNFEGRVQQTRAAVPLVGDAREDWAILRAL SEVVGKRLPYDSHAAVRARLAGIAPHFANIDAVQTPVWLNGEYVKGVEALAKAAPLQPSAPLTSTISNFYMTDAISRASR TMAKCIQARQQTK Q6UKY6 1.6.5.3 NADH:ubiquinone oxidoreductase 30kDa subunit domain-containing protein Chlamydomonas reinhardtii 0.032178599999999995 2 LEVO MKSAQSLLMKLQAPIKGCLQQGTSEGLRSFAARALGSAMETSLIPEANSASTSASSASQLQQTRSMGYAYARKTTDKDYI ASEHMQAFGNTQLTDYIIKTVPKFVKMAVTGPAQSSVLYQEPTIYTTPESLVPLMVFLRDHTNTQFKCLLDVTAVDFPER AARFEVVYHLLSPRWNNRIRVKVCVDEVTAVPTLCKVFNTANWFERETWDMFGVFFSGHPDLRRILTDYGFTGHPLRKDF PMTGYQEVRYDYGKKRVVSEPLELTQEFRYFDFNSPWETLNR A8IHL3 NADH:ubiquinone oxidoreductase 49 kD subunit Chlamydomonas reinhardtii 0.052672461000000004 2 LEVO MRRQAVTCLRGLWRAGSASQEVANQAGASSFALQGLLAQTERGLRTSVDAKDAKIAPLSAMPWSLQAARSATAEALTPAK VNNFTLNFGPQHPAAHGVLRLVLEMQGEIIMRADPHIGLLHRGTEKLLEYKTYLQGLPYFDRLDYVSMMCMEHSYVLAIE QLLNVSVPLRGQYIRVLFSEITRVLNHLLAITCHSMDVGALTPFLWAFEEREKLFEFYERVSGARMHAAYFRVGGVSQDL PIGLLRDVYDWARQFASRLDEMEELLTGNRIWKERTVDVGTITAQMAWDWGCSGPILRASGIDWDLRKTQPYDAYGKMQF NVPIAGHGDCYDRYLVRLQEMRESLRIIYQCLNEMPDGLYKSPDGKVCPPSRSTMKQSMEALIHHFKLYTEGFHVPAGET YRAVEAPKGEFGVYLVSRGGNRPYRCKIRSPGYAHLQMTDVISRGAMLADVVTIIGTLDVVFGEIDR Q6V9A8 1.6.5.3 NADH:ubiquinone oxidoreductase subunit 10 Chlamydomonas reinhardtii 0.018144184 2 LEVO MSKPAAAAKGLEFVVSKVDNVVNWARAGSIWPMTFGLACCAVEMMHAGASRYDLDRYGIIFRPSPRQSDAMIVAGTLTNK MAPALRKVYDQMPEPKWVVSMGSCANGGGYYHYSYAVVRGCDRVVPVDVYVPGCPPTAEGLLYGLLQLQKKIYRSKTTQI WYKK Q6V9B0 1.6.5.3 NADH:ubiquinone oxidoreductase subunit 8 Chlamydomonas reinhardtii 0.02653015 2 LEVO MPLLRRAAQSLLTSWAPVATNCGAMSELVRCMGTERRPGESGAWKQIERQRYASDWENDPTFKRTPKNLAEVLDDSASML LLTDVWRGMAYTLGAFFDKKVTIMYPFEKGQLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRR TTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTETREELLYDKQKLLENGDKWETEIATNLRTESLYR Q6V9B1 1.6.5.3 B14.5a Chlamydomonas reinhardtii 0.013790121999999998 2 LEVO MAEALKALEKVLLRIAPWRMTGVRSIPEFEHYLPMGLEYRKFSPGTQPVKAVVPHDSPKLVYDIKYFVRDYRRNNKYTAR TVDAKTTFDFDKLYAGMPTKPEQVKNVTRPLIMPTRGY A8JHV4 Mitochondrial NADH:ubiquinone oxidoreductase 18 kDa subunit Chlamydomonas reinhardtii 0.017977553 2 LEVO MLRQLATLLPGALRSASGVNSLALNRGFKAVADVEIDFNNREVLKKYVGIRDHLSKEPGTRGKLIEALTEVLSSIKAAPE GSDYRKAVEASCIYRLKVCKENESDAAIEEVLDAHLEELIKEAKEEARLVPLIAGNAPWDVPADYAVPVVDYTDAATILD APPKK Q6UKY3 1.6.5.3 Acyl carrier protein Chlamydomonas reinhardtii 0.013682472999999999 4 LEVO MALSSAANVVRSAVLQHLRVTVTSSLQSSSLPTFTNIISRGFGGGFLDKDSVTERVLHVTKHFEKIDASKVSPAASFEKD LGLDSLDVVELVMALEEEFGLEIPDAEADKIASVGDAINYICSNPMAK Q6UKY4 NADH:ubiquinone oxidoreductase B14 subunit Chlamydomonas reinhardtii 0.016135854999999998 2 LEVO MSSRLAQKAVEVAHQDKRLFGGAARHFYFEICRCLPFIQRLHKMEEMVSLKELRAIVKEKFKEYKDVKDGRVVDLLIFKG REEIETYLLMHKQRHHVVTEVVEPYYAKQRAVKKVTTNSPFLDSFLSSGYAAIGVRNS Q6UKY9 1.6.5.3 NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial Chlamydomonas reinhardtii 0.020648477 2 LEVO MQRSILSALLPRLPLGVREFATASADYSIAMKKAAEITGAAESAMGPKEGGFTAGVPLDTFTRKARIYAPARTASQSGLA RTVDFATTTPAWKIEFEPTAKWQNPLMGWTSSADPLENVGRSALVFYTKEEAMRFCEKLGWEYEVTEPNKRRTQRTKRYM QYGDNFGTKRAGVPDLSTLPSNRAAAK Q6UP29 NADH:ubiquinone oxidoreductase 13 kD-like subunit Chlamydomonas reinhardtii 0.016306489 2 LEVO MALQATSQLARHVISKTLGGAFATKAADVVPTFDWKKVPVPSTTAKDIPVTVKGATPAGDLRATSGLGLGDGIKNHTDKW LDGDKKSPMEYINEVAPIKVKGLVVASYGSDDPALGCPVEYINLKGTSLENPAVCKYTGNRYYSDDWKGGAAHH Q6UP30 1.6.5.3 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 Chlamydomonas reinhardtii 0.018034045 2 LEVO MSLSGYFSRLLEASGKKSVGSFFASWEFGKMLVDGNLAHNVLVRATGAGRLVGTDYNGNRYYENEEAAYGRRRWIVYKDK FDYNPTTIPPEWHGWLNYINDYNPTNTQFKQPTYQIEASMTKTGTQTCYNPKGSWFSAKPRNWRKYESWTPANKSA Q6UP31 NADH:ubiquinone oxidoreductase B8 subunit Chlamydomonas reinhardtii 0.011012531999999998 2 LEVO MAWRNSLSKSMQELRIHLCQTSAGSKGVRDFIVANYAEMKKANPHFPILIRECAGTEASLTARYDFGAEKSVNVQGATTG AVQQQLEQLILAGQSMPKSGE Q6V9A9 1.6.5.3 Putative NADH:ubiquinone oxidoreductase 39 kDa subunit Chlamydomonas reinhardtii 0.043709175999999995 2 LEVO MLPILGRNAAGSALARLAGLRWAAAASQSSRDYSSTLMTADKLGPGGRSSVSGITATVFGANGFLGSYIVNELAKRGSQV VCPFRSTENEAMHLKQMGDLGQIVLLPELDIRNDDDIKRAISRSNVIINCVGMRLQTKNWSFEDVHVDFPKRLAKLAAET GQVQRLIHFSDMGADENHKSLRMRTKAVGDKEVLDAFPDATIVRPGDIVGIEDHFYNYLIYQLTLTVFAPVVESGSNKIQ PTYVLDVADAVAALLRKPDTAGKTLYLGGPEVLTMREVYDLLLKTLRIYRDDTVHLPAWAVKAMYKPFDSVRRMLPGLPM TSPLATEDYVEEMLRDKVVPAGALGYADLGIVPQKVTDGLAIEPVRHARVGGYRWGDMSAVAKDIPESVRKYYNIKQ Q6V506 NADH-ubiquinone oxidoreductase chain 1 Chlamydomonas reinhardtii 0.031606412 2 LEVO MIVASILILIVPVLLSVAMFTLAERTVMASMQRRFGPQVSGISGLLQPFWDGLKLGVKEPVLPDSSSAGAFAASPMISFV LSQVAWVGICISDASFQGLVIMAISSLAVYGVMLAGWASNSKYAFLGCLRSVALMVSYELSLGAALLSIGLFVTDGTGMK CLNFAEMPTTPQYAMLPLCLIFLVCILAETKRDPFDLPEAELVAGYNVEYSSLGFALFFIAEYANMAVMSAIASIYFLGG FSALKITALFFAFVWTRGTLPRYRYDQFMRLGWKAFLPLTLAFFALHASVAI P11658 7.1.1.2 NADH-ubiquinone oxidoreductase chain 2 Chlamydomonas reinhardtii 0.042834082

Extension in N-ter not present in UNIPROT entry,Extension in N-ter not present in UNIPROT entry

2 LEVO (UNK)(UNK)(UNK)(UNK)(UNK)MIELDLCFGLLLLILFGLLSLRNGHVSLAHIRFICQCWLVMITPLEVQDFALCIL TVVLLQSFHSFEALLFLLLAYIGQLYMMHSCNLVSFYVCLEAQTLCVVVLCGLLARGASTSFSVEAALKFLLLSAMVSGM ALFWFSAMYQRTGSLDMVGQETFWILLVMLFKLGVAPMHMWSVDLYGSIPKSLLLYLSTAPKLSLFTFWASSWHHDFSVG VFILFSMFIGSIGAYGQPALRSLFAYSTINEIGLLLLAVETAGFHTLYQHLGIYIITQLLLWNLTDKRLFALCAVSLAGL PPFAGFFGKAWIFWHAMSVQAFSLLAAALFCTLLSLVYYLRVIRLFWTAPVHTAASFTGAPNQTTLTSACAVALAFAPVM LVKPFVI P08740 7.1.1.2 NADH-ubiquinone oxidoreductase chain 3 Chlamydomonas reinhardtii 0.030207528999999997 2 LEVO MALRSASGLSLGVGRLLPCLNAQLSRELQAFAAPSREEQQGDVSAKSPAQLQQYVREHANAATCNKLGLGFAAQLLGTAA QQPSTSAVAAATAAKASCGPVLPARPTRRPLLPGMHRTPGFALPMQQSVRGYNAWSPAQRYFVEGDHVVTAEASRTFQFT GLDSGSFYPYVIATVIATAISTVFIVAPLVIAPSRVDLDKSSAYECGFDAFGEARQTFSVSFYLVSIMYLLFDIEIAYLF PYAMTHASLPMYWTMNLFLAILVAGFAYEWGMGALEWRE Q6V502 NADH-ubiquinone oxidoreductase chain 4 Chlamydomonas reinhardtii 0.04876666 2 LEVO MFISVLLILFALCVTLIPEAHYHMVRVWSFVATIIPMWVVTWMWWNFDASGHGLQMLVILGRSHLAFGIDGVALSLMLLT TVLFPICMMLLRTVAGFMTFILLEVLVLSALCVLDLLGFYILFEASLILLFLLIGRAPYGSLEAAYKIVLYTMAGSLVLL PTLFMIYSECGTTNVLYMTCAYNHQTVLGWGLLAVLAVKIPLMPVHLWLPEAHVAAPTAGSVLLAGVLLKLGGIGFLRFM LPVVPEFCVSVFPLVSTLCLVSFLFSTLSTLRQIDLKKIVAYSSIAHMSMVTLAIFSQSEFSAYSSSFLMIAHGLISPAL FLIVGILYDRAHTKFILYFSGLGASMPIGSTLFFLFTLGNLAFPLFPNFIAEVLCMVSIFAVHELLAYVFCVCQVLGAAY GFWAFNRVVHGLPRGPADVTRTEFHTVLPLLIGAVWLGIKPMA P20113 7.1.1.2 NADH dehydrogenase subunit 4L Chlamydomonas reinhardtii 0.024258356999999998 2 LEVO MSRTQLLRRLLPGVPGTPGLFSQSCTAVPNGLQQCGFFSSHEEEQKQQSSLQPASSSLVQFANIVNRPMPVPLATAAGFA ASPLMAMPARRGAGVMGVRRPALPMLPGMGPTTTPSAALARSYYTEGEIFGTTFMYTTNMMFWAGIVGAVAFRRNLIILL LSAETVMLACNMNFLFTAAYLNDITGAIMSITITTIAACETAIGLALCVAYFHMRSATDVEALNMLK Q84K56 NADH-ubiquinone oxidoreductase chain 5 Chlamydomonas reinhardtii 0.059087402 2 LEVO MFLLSVFFPLLGGLVNTSPIARFLGHRGSSIIAIGCMVVAFISSVVIYYEVVFMGCAVSVDVFGTWFSVGTFHAGWTFNF DLLTANMLFTVTGVSMAVHMYACDYMRQDPHLNLFLGYLSYFTGFMCVLVAADNLLVMLVGWEGIGVCSYLLIGYWSHRL SAVKSAQKAILVNRVSDGLLMWGVLWVWYHLGSLEYDLLNVYSASGFVGLSILIGAMGKSAQILFHVWLADAMEGPTPVS ALIHAATLVTAGVYLLVRLHIHDEMFVIIVGSLTAFMAGVFGATQSDLKRVIAYSTCSQLGYMMVSLGLGETGGEASMGH LMTHASFKAALFLAAGMVISGNGGNQHIARYGGSAHSAMFTMLTLMVASLSLIGWPELSGFYSKETILNLAAICADPIAD VAHTLLLLTAMLTSAYTTKLFYQCFMVDFSGSSVTPVRNVLPILAMAILLLDIMLKVWVGTNLLSGMLFFLPWGVKTLPF GLMVAGILTATAAVGSERFTLIRFCGSRWGFDQLFARSPVNPIFDLGRITWAIGDRGLLSVGNLRA P08739 7.1.1.2 NADH-ubiquinone oxidoreductase chain 6 Chlamydomonas reinhardtii 0.017756295 2 LEVO MFFENSAILLCALLSIAVGYTKSPFMSLMYSVMLFINSSFVLMMLGFEFLALVNLLVYVGALAVLFLFVIMLLEIPATEL RAYSRGWSTLGIFVFIINGVFQITPSMGPRGIITGLPGAESITNLGHALYLYFADLLILNSLVLTVALFGRFAIAPVRTT GR P10329 7.1.1.2 ASHI Chlamydomonas reinhardtii 0.017110603999999998 2 LEVO MSLNSLRGLARSALQAKNALPAKAGAGAPVKLAPRPDKPLPTWYELWWDNGYYPGQPAADFMFGAWPGNMTETYYLRFWS VFGLALAAPFYYVANFTDETRMPMVPQQYPAEVRDVLVQRRNSMLKHDFSAPDFKEVKDRAKIYWTPMY A8JCW1 P9 Chlamydomonas reinhardtii 0.0067646419999999995 2 LEVO MGLIRNIATFATAVVGWSVGIPFVVQARMNGYVERNLATYDAAQRQKAEEAAIGGPITSSGGHH A0A2K3DYZ8 KFYI Chlamydomonas reinhardtii 0.013848633999999999 2 LEVO MGGGHHHAPAGPEPSWAKQLAPKSGLCPPEFHYNREIWYPHGGFYCDPKGWRKNTLLTLGGIGVLLYMTFSYSTANEVRH MPPKGWIPSIMWNSNVPDPVDFRGRKLNRDGTLPEGESSGHGHH A8J6N0 AGGG Chlamydomonas reinhardtii 0.014270867 2 LEVO MLRRAATLAASTLKGASNSVAEAGSQQVRRMAGGGANAYHRTYNGKPVPPELQGADYITYAGVTMKKEFHLFDTVLSKLI GAGATFTCLYHFYLNAEEHWHGDIYFFEKDVQQNGWDDEHGHGHGHAKH A8J815 ESSS Chlamydomonas reinhardtii 0.01963049 2 LEVO MSNALRGLARRVGAQYLRNQRVRGGGGEYPGGSFWSEGTQTGKNGFLFGEVPINGQPRKTLWWEPYWYAGFGGMGVGVYL IYHAKPLEALDIKYWAAPRAAKELETEMRMLDKLNERPDLKERLVAVCKDLNMIEDEAYDLVLMRNEYKVKLGMHTGRVP EDLKAIYEELEA A8J843 B9 Chlamydomonas reinhardtii 0.00733466 2 LEVO MSLGEAFRTAVYKEPVMVWSLMIYGVGISYAAFVKPSMIEPHSKDLPSAPPSLKEVMAGIQAKLNNK A8IVG9 Mitochondrial NADH:ubiquinone oxidoreductase 10 kDa subunit Chlamydomonas reinhardtii 0.009994435 2 LEVO MGWAYSGEWGMLAGFCFGTLKNVQEGKAWFRRPYIHGAGMIAGYYLFKAAADWEDEALKRIITRYERKGYAIPEDRKELF AANQYK Q6QAY2 1.6.5.3 Mitochondrial NADH:ubiquinone oxidoreductase 23 kDa subunit Chlamydomonas reinhardtii 0.023390765999999997 2 LEVO MVFSGAFNTPSSTTAREPYAKTKSSEAEYGVDTPVPASALKAADKHDALAYAVANAPLIGLAGLAAGAQEAYMTFERLPP TLSRQHFKQAQLLLGIIGKKTAYATLLGAVFSFTDATVENMRGKHDMTSGMVAGAVTGFLFGMGRPMPQPVAWPLAFAGA AVAADFIGELMPKYMKDYRIYGPVVHRENWGDPVPPRPPILDTGAAVRPSDPGQFWRGY Q6QAY4 1.6.5.3 Mitochondrial NADH:ubiquinone oxidoreductase 7.5 kDa subunit Chlamydomonas reinhardtii 0.007651823 2 LEVO MGWNALPSLVIITGIWTAGLFALDKVQMFRENKPAWANNKDGWQKALYRRDWYLQREEETLAMAK Q6QIV4 1.6.5.3 Mitochondrial putative NADH:ubiquinone oxidoreductase 6.5 kDa subunit Chlamydomonas reinhardtii 0.006497381 2 LEVO MPKVVGFQWERYEAWRHHPLLQFNKRNAFPGVGIGFAAFLAYVAYDKSQPKEDHH Q6QIV8 1.6.5.3 Mitochondrial NADH:ubiquinone oxidoreductase 13 kDa subunit Chlamydomonas reinhardtii 0.016187231 2 LEVO MAGSARNLGGLLRRTLAGEAGNAITQAGSRGFAAEAKQFTPDGKYMPGIFSKAKPLDRSTQWVHKNPYIEAWYYRRDHFE NEFVWNYRTTIEALWFLGGFTAAAYALSVFAFRQADRRSGYPKRQILGDEPAMVLPDERQFY Q6QIV9 1.6.5.3 NADH:ubiquinone oxidoreductase 15 kDa subunit-like Chlamydomonas reinhardtii 0.00956595 2 LEVO MAGMGLSTGTARCYDWYMDYLKCMDERKEPMIALRREHCLEWLEDYNECLHREKERTRRQVIERERRAQLAGGSKPAGGG H Q6TH88 1.6.5.3 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 Chlamydomonas reinhardtii 0.01029587 2 LEVO MADRFPPPPMKATQEQMDAADVPYHYRDYCAHMYIDYKECRLTSGFSWRTKCAHELHAYNKCEYKEFKRRVAIAIEEKRR RGLIAA Q6UKY7 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 Chlamydomonas reinhardtii 0.013951050999999999 2 LEVO MASEVVLALPHKLRVMRMYRTGLKELINWSANRHEWYPRAYALRQEFEDSKALTDREEIRKKLEHGEELLARFRHWEPLI KPEFVGGTAYSINPAQPKLKFIPNYDAMDEYKKGDHL Q6UKY8 NADH:ubiquinone oxidoreductase 20,9 kD-like subunit Chlamydomonas reinhardtii 0.013461299999999999 2 LEVO MTWPEPPNYYEAPKHGFKVTLENPTFPIINPDPNITDAVTNMRSENWGVVAGLAGLGYVAGYYFGAKVHWAKPTALFTSI FLGKSGLLWGMSDSAHRLMGFKENSKEVAANLPHVMQRESY Q6UP28 1.6.5.3 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 Chlamydomonas reinhardtii 0.016400084 2 LEVO MTEVLKRGFPGMKSVKDMPIVQDAPPPGGFPTIRIERRLPSTGPTGVAIFAGLAAIMGYGFYKLHEQRQEKRFEADEILT VRKIVHPVLQAEWDLRYLEHLKREREEEAKVMKNVPGWKVGESTTRHRWLAPLESWDKRPLV Q6UP32 Putative NADH:ubiquinone oxidoreductase 12.5 kDa subunit Chlamydomonas reinhardtii 0.012542351 2 LEVO MTSNTVRVPYSHELYAMSRHVVFRAEKEHKAAVECKGKHDWPEDCKPESEALVRATNKLYKEIMEKSPEEFKEYAQCLDW YGLRFSRCRDKQTAFEKAFPIVDAKK Q6V504 Putative NADH:ubiquinone oxidoreductase 17.8 kDa subunit Chlamydomonas reinhardtii 0.017907219 2 LEVO MSASVEERQSFHDKVNDVFKNLTGEAGKRWARPDEPILHTLNDEKEEPHIFFHNTNYRTSRKYINVEKTKILREQALECV RAAGTARYHKCTEVMKRLQAAVRVASNVDRGPLARKRDVGFIYHNNRLRELQQQAAELEIENPFPAPAKQATGGY Q6V505 Mitochondrial NADH:ubiquinone oxidoreductase 16 kDa subunit Chlamydomonas reinhardtii 0.015291994 2 LEVO MAYILDFLSYMWEKNNDDSASYKEWQDFLDVAEKDRRRDRIIAWRERTMYDDYAANAEEPIIYKRTAGFVWREVDPTGQA KNRNHTYMYNLKTFGHRSYTRRDPSELQAAATSVEARVKSGELGGLSPLA Q6QAY0 1.6.5.3 Mitochondrial NADH:ubiquinone oxidoreductase 19 kDa subunit Chlamydomonas reinhardtii 0.022349104999999998 2 LEVO MALRALGRQLRSLNLLPAVQPARFFGAGAHHDDEHEEEEHGPAQTPTVFDKLVEVTVVDMNGIRHRVRGLQGQSLAQALV EYGFPDTYFFPNMGFYTQHIVDAHVFVPKEFWGKVQNVDPESDDGLAVKRMFRDIVQDYQRDTSFFASYITLGAEHNGMT VGIGPIKPWILHSEWAFAGVHDSRNKQFDKPTVEIWG Q6QAY1 1.6.5.3 Mitochondrial NADH:ubiquinone oxidoreductase 32 kDa subunit Chlamydomonas reinhardtii 0.032729148 2 LEVO MSLFKSSLPAGFLFPYRHPKAKGLVEGTLYGLGSLFRGVGAALDELGSMVQGPQGSVKDHVQPNLAFAPVHRKPDVPVNA GQVVPAPPAAARTLKIKEVVVPNKHSTAFVAANANVLGNVKLGAGSSVWYGAVLRGDVNGIEVGANSNIQDNAIVHVSKY SMDGTARPTVIGNNVTIGHAATVHACTIEDNCLVGMGATVLDGATVKSGSIVAAGAVVPPNTTIPSGQVWAGSPAKFLRH LEPEEASFIGKSASCYAELSAIHKFEQSKTFEEQYTESCIIKDRAALADPSNSVHQMWEYDSQTALVARAKR Q6S7R7 1.6.5.3 CAG2 - CA-like Chlamydomonas reinhardtii 0.031209571999999998 2 LEVO MLKRVGQSLVPFARAGLTQTAESFRGVSSQFFDAPNGPSVKQVLIEDEWYNRQRSIFPLLDKEPYYPVDVFVAPNAVVCG DVDIYGGASVFFGAVLRGDLNKIRLGNRSAILDRAVVHAARAVPTGLNAATLIGEKVTVEPYAVLRSCRVEPKVIIGARS VVCEGAVVESESILAPNSVVPPARRIPSGELWGGSPAKFIRKLTDHERDRVLDDVSTHYHNLATMFRREALEPGTAWRDV EAWRQKLVDQGEYEWINFREQKYLMRLQHEAEALEKLTH A8JFK6 CAG1 Chlamydomonas reinhardtii 0.024319578 2 LEVO MNPINGLKTILHRVGFAMRESGQALERVGCRLQGVYSFEEKLNRHATVLPMRHNVPSLDKTSWVAPSGMVSGSVTLGENS SVWYGAIVRGDFQPVVVGSNSNIQDAAYVGATSEFSGPVTIGDNVSVGHGAVLKGCTVGDNVLIGMNSIISEHAEIQSGA VIAAGSYVEEGTTVPSGEVWAGSPAKKLRDVRAGEAEYLKSLPGRYTELAGEHKGIMKVLKMKQAEYFA A8JHY4 P10 Chlamydomonas reinhardtii 0.0051228129999999995

Frame shifted version of CHLRE_08g368050v5

2 LEVO GVFSRYYNTGLLCGVAVASGISIWWYNRESIYVRVKSDLEKEGKT Mitochondrial NADH:ubiquinone oxidoreductase 9 kDa subunit Chlamydomonas reinhardtii 0.012159065 2 LEVO MASVLRQLGLQALRSVQPQAQQQTQLALRRGMGGYAKPKVDTSLDHVFGDNSNKLNYNFEPMGMGSLFIRTMVMVGVFFF PVFIMINDDYKYTSFLDKVAAAKAAKSSE Q6QAY5 1.6.5.3 NUOP8 Chlamydomonas reinhardtii 0.017157359 2 LEVO MQRASLSLLKNCVGGASLLETSLQRALASSYTTLSSSTGSSSSSLPTPAVRPGLLSSLSSSGPCGVKGIRFAGDYKPEVP GNTVDNWTELRASWNKERASSLGTNYYLNVAVMGFAYWLNEAYYFPPRTLYVGALVFFALYVRKAYFSTPYAFKHEY A8IS53 NUOP7 Chlamydomonas reinhardtii 0.013655892999999999 2 LEVO MSMKTLADYIRWRNKEPIKASVEEWRPPVPVINYDKPQNDVLSALDKDPIVRRVLINPKVKPPRVFPILGSPGYQFFAGL WTGAMLTFIFTSKPLGRKEVEDLVKYDPAYFPEYAKSH A8JA22 PROTOPORPHYRIN IX CONTAINING FE 0.000616487 8 HEM HEME C 0.0006205189999999999 4 HEC ZINC ION 6.5409e-05 6 ZN HEME-A 0.000852837 12 HEA COPPER (II) ION 6.354599999999999e-05 6 CU MAGNESIUM ION 2.4305e-05 6 MG DINUCLEAR COPPER ION 0.00012709199999999998 6 CUA FE2/S2 (INORGANIC) CLUSTER 0.00017581999999999998 4 FES FLAVIN MONONUCLEOTIDE 0.00045634399999999997 2 FMN IRON/SULFUR CLUSTER 0.00035163999999999996 12 SF4 S-[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] dodecanethioate 0.000540651 4 8Q1 NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE 0.000745421 2 NDP CROTONYL COENZYME A 0.0008356079999999999 2 COO subtomogramAveraging cell 7.0 Quantifoil R2/1 COPPER CARBON GLOW DISCHARGE 20 AIR ETHANE-PROPANE 100 FEI VITROBOT MARK IV TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 0.8 3.5 64000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN TFS Selectris X TFS FALCON 4i (4k x 4k) 4096 4096 3.5 1 1 C2 5.44 FSC 0.143 CUT-OFF RELION 4 14488 131 26591 Template Matching STOPGAP 0.7.1 PyTom 0.5.0 RELION 4 PHASE FLIPPING AND AMPLITUDE CORRECTION RELION 4 MAXIMUM LIKELIHOOD RELION 4 emd_50210_msk_1.map emd_50210_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 288 288 288 0 0 0 288 288 288 550.08 550.08 550.08 90.0 90.0 90.0 X Y Z -0.497835 0.9967084 0.00039430032 0.035542637 1.9100001 1.9100001 1.9100001 AUTHOR ::::EMDATABANK.org::::EMD-50210:::: Output of RELION LocRes emd_50210_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 288 288 288 0 0 0 288 288 288 550.08 550.08 550.08 90.0 90.0 90.0 X Y Z -0.5620627 0.8611467 -0.00037980452 0.06395162 1.9100001 1.9100001 1.9100001 AUTHOR ::::EMDATABANK.org::::EMD-50210:::: emd_50210_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 288 288 288 0 0 0 288 288 288 550.08 550.08 550.08 90.0 90.0 90.0 X Y Z -0.54392415 0.905101 -0.0002768315 0.06398952 1.9100001 1.9100001 1.9100001 AUTHOR ::::EMDATABANK.org::::EMD-50210::::