2024-08-28 REL PDBe PDBe PDBe 2024-04-23 2024-08-14 2024-08-14 2024-08-28 European Union (EU) 101086665 European Union German Federal Ministry for Education and Research 03Z22HN23, 03Z22HI2 and 03COV04 Germany European Regional Development Fund ZS/2016/04/78115 European Union German Research Foundation (DFG) 391498659 Germany Myo-inositol-1-phosphate synthase from Thermochaetoides thermophila in complex with NAD Traeger TK Kyrilis FL Hamdi F Kastritis PL inositol metabolism, endogenous, conformational selection, ISOMERASE Trager TK Kyrilis FL Hamdi F Tuting C Alfes M Hofmann T Schmidt C Kastritis PL Disorder-to-order active site capping regulates the rate-limiting step of the inositol pathway. Proc.Natl.Acad.Sci.USA US 121 e2400912121 e2400912121 2024 39145930 doi:10.1073/pnas.2400912121 1091-6490 0040 PNASA6 9f2k FULLOVERLAP Native homotetramer of the Myo-inositol-1-phosphate synthase Native homotetramer of the Myo-inositol-1-phosphate synthase 0 1 Thermochaetoides thermophila DSM 1495 0.24 inositol-3-phosphate synthase Thermochaetoides thermophila DSM 1495 0.056735477 1 LEVO IFKVNSPNVVYTDDEIRSKYVYRTTEVTTAEDGSLIATPRETVYDFKVDRKLPKLGVMLVGWGGNNGSTITAGIIANRRG LVWETRNGKQEANYYGSVIMGSTIKLGTDAKTHKDINIPFHSVLPMVHPNDIVIGGWDISGLNLADAMDRAQVLEPSLKA LVRKEMASMKPLPSIYYPDFIAANQEDRADNILPGNKKCWEHVEEIRKNIRDFKAANGLDKVIVLWTANTERYASIIEGV NDTADNLLNAIKNGHEEVSPSTVFAVSSILEGVPFINGSPQNTFVPGCIELAERHGAFIGGDDFKSGQTKMKSALVDFLI NAGIKLTSIASYNHLGNNDGKNLSSQRQFRSKEISKSNVVDDMVEANTVLYKPGEHPDHIVVIKYVPAVGDSKRAMDEYH GEIFLGGHQTISIANVCEDSLLASPLIIDLVIVAELMTRIQWRLHKEDATEADWKYFHSVLSILSYMLKAPMTPPGTPVV NALAKQRAAMANIFRACLGLDPENDMTLEHKLF G0SDP4 5.5.1.4 NICOTINAMIDE-ADENINE-DINUCLEOTIDE 0.0006634249999999999 1 NAD singleParticle particle 0.6 7.4 100.0 HEPES 95.0 NaCl 5.0 KCl 1.0 MgCl2 0.5 EDTA 5.0 Glycerol Quantifoil R2/1 COPPER 200 CARBON CONTINUOUS GLOW DISCHARGE AIR 400.0
15 mA
 ETHANE 100 277.15 FEI VITROBOT MARK IV
6 s blot time with a blot force of -1.
TFS GLACIOS OTHER BRIGHT FIELD FIELD EMISSION GUN 200 100.0 2.7 0.8 2.0 240000.0 OTHER NITROGEN 77.15 103.15 FEI FALCON III (4k x 4k) INTEGRATING 4000 4000 2 6261 28.0 1 309043 1 D2 SIMULTANEOUS ITERATIVE (SIRT) 2.48 FSC 0.143 CUT-OFF cryoSPARC 4.4.1 Local refinement 255354 MAXIMUM LIKELIHOOD cryoSPARC 3.3.2 Ab-Initio Reconstruction MAXIMUM LIKELIHOOD cryoSPARC 3.3.2 Non uniform Refinement 5 70000.0 cryoSPARC 3.3.2 3D classification emd_50149.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 302.08 302.08 302.08 90.0 90.0 90.0 X Y Z -0.9780574 1.7541344 -0.0013905324 0.035171174 0.59 0.59 0.59 0.152 AUTHOR Myo-inositol-1-phosphate synthase from Thermochaetoides thermophila; state 1 AlphaFold in silico model
Local Installation
 FLEXIBLE FIT REAL AlphaFold in silico model
Local Installation
 FLEXIBLE FIT REAL emd_50149_msk_1.map emd_50149_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 302.08 302.08 302.08 90.0 90.0 90.0 X Y Z -0.50509673 0.6762864 -0.0012780738 0.026210275 0.59 0.59 0.59 AUTHOR Myo-inositol-1-phosphate synthase from Thermochaetoides thermophila; state 2 emd_50149_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 302.08 302.08 302.08 90.0 90.0 90.0 X Y Z -0.81678873 1.116887 -0.0012351499 0.03391844 0.59 0.59 0.59 AUTHOR Myo-inositol-1-phosphate synthase from Thermochaetoides thermophila; state 3 emd_50149_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 302.08 302.08 302.08 90.0 90.0 90.0 X Y Z -0.16878487 0.34855023 -0.00037296204 0.01388063 0.59 0.59 0.59 AUTHOR Halfmap A; state1 emd_50149_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 302.08 302.08 302.08 90.0 90.0 90.0 X Y Z -0.16927087 0.35195476 -0.00037175478 0.01381114 0.59 0.59 0.59 AUTHOR Halfmap 5; state1