2025-07-09 REL PDBe INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY DATA_COLLECTION em_admin em_software _em_admin.last_update _em_software.name EXPERIMENTAL_SUMMARY em_admin em_software _em_admin.last_update _em_software.name PDBe PDBe 2024-04-02 2025-04-16 2025-04-16 2025-07-09 National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) U54AI170791 United States The Francis Crick Institute CC2058 United Kingdom Wellcome Trust CC2058 United Kingdom Medical Research Council (MRC, United Kingdom) CC2058 United Kingdom Cancer Research UK CC2058 United Kingdom HIV-1 envelope glycoprotein (BG505 gp140 SOSIP.664) trimer in complex with ELC07 broadly neutralizing antibody. Hope J Alguel Y Nans A Cherepanov P HIV-1, envelope glycoprotein, gp140, neutralizing antibody, VIRAL PROTEIN Griffith S Muir L Suchanek O Hope J Pade C Gibbons G Tuong K Fung A Touizer E Rees-Spear C Nans A Roustan C Alguel Y Fink D Orkin C Deayton J Anderson J Gupta RK Doores KJ Cherepanov P McKnight A Clatworthy M McCoy LE TITLE: Preservation of memory B cell homeostasis in an individual producing broadly neutralizing antibodies against HIV-1 To Be Published 0353 9evz FULLOVERLAP HIV-1 envelope glycoprotein (BG505 gp140 SOSIP.664) trimer in complex with ELC07 broadly neutralizing antibody HIV-1 envelope glycoprotein (BG505 gp140 SOSIP.664) trimer in complex with ELC07 broadly neutralizing antibody 0 1 2 3 4 Homo sapiens Envelope glycoprotein gp41 Human immunodeficiency virus 1 BG505 SOSIP.664 0.01910359 3 Homo sapiens LEVO AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQ LLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALDGSGLNDI FEAQKIEWHE Envelope glycoprotein gp120 Human immunodeficiency virus 1 BG505 SOSIP.664 0.057945976999999996 3 Homo sapiens LEVO MDAMKRGLCCVLLLCGAVFVSPSQEIHARFRRGARAENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACV PTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTT ELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNG TGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAF YATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWI SNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRD NWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR ELC07 heavy chain Homo sapiens 0.028586055 1 Homo sapiens LEVO METDTLLLWVLLLWVPGSTGEVQLVQSGAELKKAGSSVKLSCQAYGVAFSTYSFHWVRQAPGQGLEWLGGFIPLVGKPNY TNKFRGRLTITADESARTTYMELRSLRSDDTAIYYCAGGGAYSSGGGRFHYFGMAVWGQGSTVTVSSASTKGPSVFPLAP SSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTK VDKRVEPKSCGSGENLYFQSAGHHHHHH ELC07 light chain Homo sapiens 0.025599775 1 Homo sapiens LEVO MTQTPASLLFLLLLWLPGAKCDIQLTQSPSTLSAPVGAGVTITCQASQSISNGLAWYQQKPGRAPKMLITEGSSLKSGVP DRFRGSGSGTHFILTISDLQPDDSATYFCQQYNTFPWTFGRGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNF YPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC 2-acetamido-2-deoxy-beta-D-glucopyranose 0.000221208 27 NAG singleParticle particle 1 7.5 150.0 NaCl sodium chloride 50.0 Tris tris
150 mM NaCl, 50 mM Tris-HCl, pH 7.5
 C-flat-1.2/1.3 GOLD 400 CARBON HOLEY ETHANE-PROPANE 100 293 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 1.3 3.1 FEI FALCON IV (4k x 4k) 33.0 1 PHASE FLIPPING AND AMPLITUDE CORRECTION 1 FOURIER SPACE 2.92 FSC 0.143 CUT-OFF cryoSPARC 275291 MAXIMUM LIKELIHOOD cryoSPARC MAXIMUM LIKELIHOOD cryoSPARC emd_50020.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 0 0 0 360 360 360 342.0 342.0 342.0 90.0 90.0 90.0 X Y Z -0.022710493 1.6258967 0.0009700964 0.020539772 0.95 0.95 0.95 0.1 AUTHOR Final map filtered with DeepEMhancer. Suitable for illustration purposes. 8FR6 A PDB experimental model 8FR6 C PDB experimental model H AlphaFold in silico model L AlphaFold in silico model RIGID BODY FIT emd_50020_msk_2.map emd_50020_msk_1.map emd_50020_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 0 0 0 360 360 360 342.0 342.0 342.0 90.0 90.0 90.0 X Y Z -3.059952 4.0340157 0.0020635019 0.057702083 0.95 0.95 0.95 AUTHOR Locally filtered sharpened map. Used for real-space refinement. emd_50020_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 0 0 0 360 360 360 342.0 342.0 342.0 90.0 90.0 90.0 X Y Z -0.4535486 1.0012662 0.0010649905 0.035498697 0.95 0.95 0.95 AUTHOR Half-map B. emd_50020_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 0 0 0 360 360 360 342.0 342.0 342.0 90.0 90.0 90.0 X Y Z -0.45064527 0.9162572 0.0010554055 0.035542004 0.95 0.95 0.95 AUTHOR Half-map A.