2026-09-02 REL PDBe INITIAL_RELEASE REPOSITORY STRUCTURE_SUMMARY em_admin entity entity_poly _chem_comp.name _em_admin.last_update _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code DATABASE_REFERENCES citation _citation.journal_volume _citation.page_first _citation.page_last OTHER atom_sites cell _atom_sites.fract_transf_matrix[1][1] _atom_sites.fract_transf_matrix[2][2] _atom_sites.fract_transf_matrix[3][3] _cell.Z_PDB REMEDIATION REPOSITORY Carbohydrate remediation STRUCTURE_SUMMARY atom_site chem_comp entity pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_struct_assembly_gen pdbx_struct_conn_angle struct_asym struct_conn struct_site struct_site_gen _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.type_symbol _chem_comp.name _chem_comp.type _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_role _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id STRUCTURE_SUMMARY chem_comp_atom chem_comp_bond database_2 em_admin pdbx_entry_details pdbx_modification_feature _database_2.pdbx_DOI _database_2.pdbx_database_accession _em_admin.last_update REMEDIATION REPOSITORY Metalloprotein remediation STRUCTURE_SUMMARY atom_site chem_comp chem_comp_atom chem_comp_bond em_admin entity entity_poly entity_poly_seq pdbx_entity_instance_feature pdbx_entity_nonpoly pdbx_modification_feature pdbx_nonpoly_atom_coordination pdbx_nonpoly_atom_coordination_sphere pdbx_nonpoly_atom_coordination_sphere_order pdbx_nonpoly_scheme pdbx_poly_seq_scheme pdbx_struct_assembly_gen pdbx_struct_conn_angle pdbx_struct_mod_residue struct_asym struct_conn _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.group_PDB _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.type_symbol _chem_comp.formula _chem_comp.formula_weight _chem_comp.id _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.type _em_admin.last_update _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly_seq.mon_id _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.category _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.type _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_struct_assembly_gen.asym_id_list PDBe PDBe 2019-05-13 2019-06-19 2019-07-03 2026-09-02 Danish Council for Independent Research 0602-02912B Denmark Lundbeckfonden R171-2014-663 Denmark Lundbeckfonden R209-2015-2704 Denmark Lundbeckfonden 2015-2666 Denmark French National Research Agency ANR-14-CE09-0022 France French Infrastructure for Integrated Structural Biology ANR-10-INSB-05 France Timcenko M Lyons JA Lipid Flippase, Lipid Transport, P-type ATPase, PS Transport. Timcenko M Lyons JA Januliene D Ulstrup JJ Dieudonne T Montigny C Ash MR Karlsen JL Boesen T Kuhlbrandt W Lenoir G Moeller A Nissen P Nature UK 571 366 370 2019 31243363 doi:10.1038/s41586-019-1344-7 1476-4687 0006 NATUAS 6roh FULLOVERLAP EMDB EMD-4972 associated EM volume

Cryo-EM structure of the autoinhibited Drs2p-Cdc50p

Binary complex of Drs2p-Cdc50p Binary complex of Drs2p-Cdc50p 0 1 2 Saccharomyces cerevisiae S288C Probable phospholipid-transporting ATPase DRS2 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ATCC 204508 / S288c 0.163665766

D560 described by Aspartate beryllium trifluoride (BFD) engineered C-terminal GGGG-LVPRGS-BAD-tag Residues 1-104 are removed by proteolysis with thrombin Residues 1364-1460 are removed after cleaving of the purification tag by thrombin

1 Saccharomyces cerevisiae S288C LEVO MNDDRETPPKRKPGEDDTLFDIDFLDDTTSHSGSRSKVTNSHANANYIPPSHVLPEETIDLDADDDNIENDVHENLFMSN NHDDQTSWNANRFDSDAYQPQSLRAVKPPGLFARFGNGLKNAFTFKRKKGPESFEMNHYNAVTNNELDDNYLDSRNKFNI KILFNRYILRKNVGDAEGNGEPRVIHINDSLANSSFGYSDNHISTTKYNFATFLPKFLFQEFSKYANLFFLCTSAIQQVP HVSPTNRYTTIGTLLVVLIVSAMKECIEDIKRANSDKELNNSTAEIFSEAHDDFVEKRWIDIRVGDIIRVKSEEPIPADT IILSSSEPEGLCYIETANLDGETNLKIKQSRVETAKFIDVKTLKNMNGKVVSEQPNSSLYTYEGTMTLNDRQIPLSPDQM ILRGATLRNTAWIFGLVIFTGHETKLLRNATATPIKRTAVEKIINRQIIALFTVLIVLILISSIGNVIMSTADAKHLSYL YLEGTNKAGLFFKDFLTFWILFSNLVPISLFVTVELIKYYQAFMIGSDLDLYYEKTDTPTVVRTSSLVEELGQIEYIFSD KTGTLTRNIMEFKSCSIAGHCYIDKIPEDKTATVEDGIEVGYRKFDDLKKKLNDPSDEDSPIINDFLTLLATCHTVIPEF QSDGSIKYQAASPDEGALVQGGADLGYKFIIRKPNSVTVLLEETGEEKEYQLLNICEFNSTRKRMSAIFRFPDGSIKLFC KGADTVILERLDDEANQYVEATMRHLEDYASEGLRTLCLAMRDISEGEYEEWNSIYNEAATTLDNRAEKLDEAANLIEKN LILIGATAIEDKLQDGVPETIHTLQEAGIKIWVLTGDRQETAINIGMSCRLLSEDMNLLIINEETRDDTERNLLEKINAL NEHQLSTHDMNTLALVIDGKSLGFALEPELEDYLLTVAKLCKAVICCRVSPLQKALVVKMVKRKSSSLLLAIGDGANDVS MIQAAHVGVGISGMEGMQAARSADIAVGQFKFLKKLLLVHGSWSYQRISVAILYSFYKNTALYMTQFWYVFANAFSGQSI MESWTMSFYNLFFTVWPPFVIGVFDQFVSSRLLERYPQLYKLGQKGQFFSVYIFWGWIINGFFHSAIVFIGTILIYRYGF ALNMHGELADHWSWGVTVYTTSVIIVLGKAALVTNQWTKFTLIAIPGSLLFWLIFFPIYASIFPHANISREYYGVVKHTY GSGVFWLTLIVLPIFALVRDFLWKYYKRMYEPETYHVIQEMQKYNISDSRPHVQQFQNAIRKVRQVQRMKKQRGFAFSQA EEGGQEKIVRMYDTTQKRGKYGELQDASANPFNDNNGLGSNDFESAEPFIENPFADGNQNSNRFSSSRDDISFDIGGGGL VPRGSGGTAAAPGPAPAPAPASAPAAAAPAGAGTPVTAPLAGTIWKVLASEGQTVAAGEVLLILEAMKMETEIRAAQAGT VRGIAVKAGDAVAVGDTLMT P39524 7.6.2.1 Cell division control protein 50 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ATCC 204508 / S288c 0.04737179699999999

engineered C-terminal GGGG-LVPRGS-GG-10xHistag

1 Saccharomyces cerevisiae S288C LEVO MVSLFKRGKAPPLTKEGPTSKKPPNTAFRQQRLKAWQPILSPQSVLPLLIFVACIFTPIGIGLIVSATKVQDLTIDYSHC DTKASTTAFEDIPKKYIKYHFKSKVENKPQWRLTENENGEQSCELQFEIPNDIKKSIFIYYKITNFYQNHRRYVQSFDTK QILGEPIKKDDLDTSCSPIRSREDKIIYPCGLIANSMFNDTFSQVLSGIDDTEDYNLTNKHISWSIDRHRFKTTKYNASD IVPPPNWMKKYPDGYTDENLPDIHTWEEFQVWMRTAAFPKFYKLTLKNESASLPKGKYQMNIELNYPISLFGGTKSFVLT TNGAIGGRNMSLGVLYLIVAGLCALFGIIFLVKLIFQPRAMGDHTYLNFDDEENEDYEDVHAENTTLREILGGGGLVPRG SGGHHHHHHHHHH P25656 1,2-DICAPROYL-SN-PHOSPHATIDYL-L-SERINE 0.000455437 1 PSF MAGNESIUM ION 2.4305e-05 1 MG BERYLLIUM TRIFLUORIDE ION 6.600700000000001e-05 1 BEF 2-acetamido-2-deoxy-beta-D-glucopyranose 0.000221208 1 NAG water 1.8015e-05 2 HOH singleParticle particle 0.6 7.0 C-flat-1.2/1.3 COPPER 400 CARBON HOLEY GLOW DISCHARGE 45

15mA

ETHANE 100 278 FEI VITROBOT MARK IV

1mM beryllium fluoride

FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K2 QUANTUM (4k x 4k) COUNTING 8.0 60.0 1 2157578 PHASE FLIPPING AND AMPLITUDE CORRECTION

ab initio

C1 2.8 FSC 0.143 CUT-OFF RELION 752881 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_4972_msk_1.map emd_4972_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 275.712 275.712 275.712 90.0 90.0 90.0 X Y Z -188.99042 261.264430000000004 0.026761623 5.509515 1.077 1.077 1.077 AUTHOR ::::EMDATABANK.org::::EMD-4972:::: emd_4972_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 275.712 275.712 275.712 90.0 90.0 90.0 X Y Z -0.034328908 0.08470871 0.0000075661196 0.0026084976 1.077 1.077 1.077 AUTHOR ::::EMDATABANK.org::::EMD-4972:::: emd_4972_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 275.712 275.712 275.712 90.0 90.0 90.0 X Y Z -0.035956092 0.08192692 0.0000074327572 0.0026081158 1.077 1.077 1.077 AUTHOR ::::EMDATABANK.org::::EMD-4972::::