Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

2024-07-10 REL PDBe PDBe PDBe 2019-05-05 2019-07-10 2019-07-10 2024-07-10 National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) 1DP2GM123459 United States Swiss National Science Foundation 155515 Switzerland Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome Barandun J Hunziker M Microsporidia, Ribosome, Intracellular Parasite Barandun J Hunziker M Vossbrinck CR Klinge S Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome. Nat Microbiol UK 4 1798 1804 2019 31332387 doi:10.1038/s41564-019-0514-6 2058-5276 EMD-4931 other EM volume

Cryo-EM structure of the microsporidian ribosome: Multibody-refined map body 1 (LSU)

EMD-4932 other EM volume

Cryo-EM structure of the microsporidian ribosome: Multibody-refined map body 2 (SSU-body)

EMD-4933 other EM volume

Cryo-EM structure of the microsporidian ribosome: Multibody-refined map body 3 (SSU-head)

EMD-4934 other EM volume

Cryo-EM structure of the microsporidian ribosome: State 1, Multibody-refined map body 3 (SSU-head)

6rm3 FULLOVERLAP Microsporidian Ribosome Microsporidian Ribosome 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 Vairimorpha necatrix 16S rRNA Vairimorpha necatrix 0.40130371899999995 1 ACCAGGUUGAUUCUGCCUGACGUAGACGCUAUUCCCUAAGAUUAACCCAUGCAUGUUUUUGAUAUGGAAAAAUGGACUGC UCAGUAAUACUCACUUUAUUUAAUGUAUUAAAUUAGUAUAACUGCGUUAAAGUGUAGCAUAAGACAUAUACAGUAAGAGU GAGACCUAUCAGCUAGUUGUUAAGGUAAUGGCUUAACAAGGCAAUGACGGGUAACGGUAUUACUUUGUAAUAUUCCGGAG AAGGAGCCUGAGAGACGGCUACUAAGUCUAAGGAUUGCAGCAGGGGCGAAACUUGACCUAUGGAUUUUAUCUGAGGCAGU UAUGGGAAGUAAUAUUCUAUUGUUUCAUAUUGUAAAAGUAUAUGAGGUGAUUAAUUGGAGGGCAAAUCAAGUGCCAGCAG CCGCGGUAAUACUUGUUCCAAGAGUGUGUAUGAUGAUUGAUGCAGUUAAAAAGUCCGUAGUUUAUAUUUAAGAAGCAAUA UGAGGUGUACUGUAUAGUUGGGAGAGAGAUGAAAUGUGACGACCCUGACUGGACGAACAGAAGCGAAAGCUGUACACUUG UAUGUAUUUUUUGAACAAGGACGUAAGCUGGAGGAGCGAAGAUGAUUAGAUACCAUUGUAGUUCCAGCAGUAAACUAUGC CGACGAUGUGAUAUGAUAUUAAUUGUAUUAGAUGAUAGAAAUUUGAGUUUUUUGGCUCUGGGGAUAGUAUGAUCGCAAGA UUGAAAAUUAAAGAAAUUGACGGAAGAAUACCACAAGGAGUGGAUUGUGCGGCUUAAUUUGACUCAACGCGAGGUAACUU ACCAAUAUUUUAUUAUUCAGAGAAGAUUUUAAUCUGAGAAUGAUAAUAGUGGUGCAUGGCCGUUUUCAAUGGAUGCUGUG AAGUUUUGAUUAAUUUCAACAAGACGUGAGACCCUUUUAUUAAUAGACAGACACAAUCAGUGUAGGAAGGAAAGGAUUAA AACAGGUCCGUUAUGCCCUCAGACAUUUUGGGCUGCACGCGCAAUACAAUAGAUAUAUAAUCUUUAUGGGAUAAUAUUUU GUAAGAGAUAUUUGAACUUGGAAUUGCUAGUAAAUUUUAUUAAAUAAGUAGAAUUGAAUGUGUCCCUGUUCUUUGUACAC ACCGCCCGUCGCUAUCUAAGAUGAUAUGUGUUGUGAAAUUAGUGAAAACUACUUGAACAAUAUGUAUUAGAUCUGAUAUA AGUCGUAACAUGGUUGCUGUUGGAGAACCAUUAGCAGGAUCAUA 5S rRNA Vairimorpha necatrix 0.038379843999999996 1 AGUUACGGCCAUAUCUACUGUAAAACACCGGAACUCGUCAGCUCUCCGAAGUUAAGCCAGUAAGAGCCUUGUGAGUACUG AGAUGGGAGACCGCUCGGAAAAGCAAGGUGCUGUAAUUU uL2 Vairimorpha necatrix 0.026019059 1 LEVO MGKVTRKIREETKKLRNPRKLSSPKYPNFPETTQGTVVDLVHERGRGVPLAHVKFNDEIYSLIATEGLYTGQTIFIGDNA PISIGNITKLKNVPGGMAVHSIEYDYEDGGCVGMTGGAYSTVVTHREETNETVLGLPSGQKKIFSSEVRCIVGVPSAGGI KEKPFLKASVAHYFNKAHCKKWPRVRCVAMNPVDHKFGGGNHQHVGRPTTISKRRPHAQLMGLIGARRTGRVKGSKK uS2 Vairimorpha necatrix 0.029692846 1 LEVO MAKVNIPIPEDFVKLILISQGHLGGIKTSKHMGRYVYGTRKPENIKVIDIEKTWEKFILASRMFCSLQNPSEAVVVSTKT FGRKGVLKFCEATNATPVIGRFIPGTFCNNQVKRPLEPRVLIVSDPFADKQALDESSYVNLQTVAFCNTDNDVSFVDVVI PMNNRSPVSISTGLFILSRLVRFMKTGEPLDENMKEIELFIYRDPVELERLVEEQKAIDSANINIGNQEFSDPEDYSTVN NWASDMTNISVETTRSGAERGWGN uL15 Vairimorpha necatrix 0.017300244 1 LEVO MLKHVKKTRKLRGHVSHGHGRVGKHRKHSGGRGICGGLKHMKTWFQKYHPDYFGKRGHRIYHRKKNDEWARWISAAKLWS LIPKETRYELIDKQQEGVPVINCRDFGYHVVVGGELSLDRPVVVKARKFTEDAKEQIEKVGGKWIICP eS26 Vairimorpha necatrix 0.012113459999999998 1 LEVO MPVKRKNHGKNRKNRGSCKPVQCDKCGRCVPKDKAIKRFKIVPLVEAGSMDDVKVASIYDIFEVPRISYKNQYCISCACH ARIVRVRSRQGRKIRYDGERRMIK uL3 Vairimorpha necatrix 0.043234254 1 LEVO MSCRKFNAPRHGSLAFCPRKRSKTIRPPIRAFPKDDPSSKIHLTGFIGYKAGMTHVVRTKTVQTKNKQSLKEILDAVTIV ETPANVIYGVTGYEQTGRGLKRVATVFSNHIDQGVLRRRYGLKWEEISGKLSGLSIEDTETKISEIKKRSCVIRVLVHSQ PSKIPVLNLKKSHTAEIQVNGGSIEEKVDWALEHFEKEFNVQDIFGVDENLDVIGVTKGKGFTGVIKRFGVTKQPRKSRK GIRKVACIGAWHPSRVMTTVARAGGKGFHRRTEINKKVYMIGHGNEKIKTEYDLTKKFITPMGGFPHYGQIKNEFIMLKG AIVGPSKRVVTLRKSLLKNQKKNEDLVIKFVDTSSKIGNGRFQTTEEKRAFYGIKKSEVVNSTD eS1 Vairimorpha necatrix 0.026982486 1 LEVO MAIQPPGSYAKANKKGSKKNQKIDNFTKKEWYNLKAPSVFPNNVCGKTMATRTSNKQDLSTLLIGRKFEVNQADLTGNLE EHARKFSFRVNEVRGKDCIGVFDGMHMTSDKIKGIVRKWHTLIEAEKDIVTKDGAILRVFVNAVTKKTPACTSKRVYCKS SDEKRIRKVMFDIIEEELKDQDISKIMKKLSQEVIGKNIEKAGSAIYPLQNCCVIKVKTVKKAREERHPMTVEAETY eL29 Vairimorpha necatrix 0.006374493 1 LEVO MAKKKNGTLANKNYKDHRNGIKRQKIGKLLELPGVNQKFLRNMKYAREGLKSSNE eS27 Vairimorpha necatrix 0.010610259 1 LEVO MVSKNLHNFQNFDLAFPTEEQIKKTHKTKNLYAVPTGYFMQVLCDGCKGVTLCYSHSQRDMNCKGCGETILKSTGGKARL IGECAFKKVDYSFE uL4 Vairimorpha necatrix 0.037979027 1 LEVO MDSKINIYELDGNTVKSTVNLPDVFSVDIRSDIIEQVHSLERLNLRQPYAVSPNAGMQHSAVSWGTGRAIARCPRIGGGG SRRSGQGAFANFCRKGRMAHPTTTMRRWCRKIVLNTRRIALAMSIAASAKTSFVESRGHKIENLKNIPLVVSDDLKKFEK TKDAFELLKNFNLTEEVERVKNSKTLRGTKGKMRNRRFRMRKGLLLIHDSPVELKAFRNIPGVDQLSINKLNIFELAPGG HAGRLVMWTESAFKKLEKLFGKFNEESRILKKFTLPKKMITTDSLEELFLSKEVQAVLNEPAYIPEFSPRKTEEEIAEGE KFISMFDSERILSK uS5 Vairimorpha necatrix 0.025904898 1 LEVO MQNKKFNRNAKEEEWVPKTKLGKLVKDRKIQSLDTIFTHSLQIREAGIVDFLLGQNIRDEVLAIKSVQKQTRAGQKTSIK AVVAIGDGKGYVGIGTFSSKDAATAIKTAASKAKCNIRPVRLGLWQGEMGQVHTVTTRASGKCGSSVVKIIPAPKGTGIS ASSVPKTILELAGVKDAYTQCFGATYTTENFAKATIEALEKSSSLFLPSQWTEPIKQLNPLMEFSNHLNKQEKIQFN eL30 Vairimorpha necatrix 0.011874985 1 LEVO MSRRYSKAVGLAASLPLVVKTGKYDIGFKSALRNVITKKAKCIVVSSSLPSVKRKQLEYYCVLAGGIPLKFYEGTNNALA NLCELKYRTGVMSVLHEGESDLLTEKIN eS28 Vairimorpha necatrix 0.007639913999999999 1 LEVO MEANLQQQFYCKVLKTADRAGSAGALVLVRVELLNNGRKMNRLIKGSVREGDIIALLECEREHRRSR uL18 Vairimorpha necatrix 0.034483754 1 LEVO MARKAGRRNKKAKSAATKRSRFQVKRRRRRECKTNYRHRINLIKQDYNKQGALKFRLVVRRTNTKVICQITRSYIDGDRV FAFADSTELKNYGVDFGLKNHFAFYATGFLAARRALAKLEMDDLYKAKETDGTYTVTEDIDEERRALKVFLDIGLSRSTK GGNTFIAMKGCSDAGVYIPHSESKFIGYEKNKPFKADELRDRIFCKHVSEYMKTLKENDEEKFKIQFSDYIKKNIEPDNI AGIYQNALDGIIKNPSRQEKEKKDYSGFKKFKVEKLSLEERKKRIQEKLSALKAN uS3 Vairimorpha necatrix 0.023717256 1 LEVO MGNDNKILKKFIADGMIFAELKELFEKCLINEGFSSLELRLEESPVKVILKVVKPHDLIGDKKWKVNQIQHLVASRLSLP DSNVVVIIDKVVEKGLCPIYQANLIKEKMLANIPHKRAANLVLKNTKFAGATGCLVTISGKLKGLRACTKKFLEGVVIKS GQPSRDYVKKHITTVNTKQGVIGIQVSIMLPHDPEGIIGPSTLLPDKIVVLDAKE eL31 Vairimorpha necatrix 0.012757263999999999 1 LEVO MNTALENNKMMEITVNLGKLTKGCNWTKKASIAIKKFRSHLKKMLKTDEKITIQKDLNKYIFSKGLTKVPRRVRIKVERI ADKDNAELNVIKCSHVLVGNFKGLKTEIISE uS14 Vairimorpha necatrix 0.007877136 1 LEVO MNLADILDVPIKQNEPKGPFSHKVATNEEAKKCRACSGFRGIIFKYDMTICRRCFREYAKDIGFNVYD eL6 Vairimorpha necatrix 0.020199307 1 LEVO AIKDIQIRLQETAKYQSEDVPKYIEKYMKKLNKQNERKRRTDLECGMIVVVCEGIYEAKRVFYLKGLDKNLVLCAVLKDG NNVSFFKIDESYLLATSTKININVNEIHISEDEVPLITKDKSIEIMDIENSEKMTKIEKSIMDEVRKVDYLKTYLNTPFE IDSSVEFYSQKY eS4 Vairimorpha necatrix 0.029931486 1 LEVO TGGPRKHLNRKVAPTSWKLDKSIGTYAIRPHSGPHKKDLCIPLAYVLEKFLEYANNRKEIQIILKSKNIKINGKIIEKRK YPVGFGDVLSIIKTDEHYRVFYGVDKNFTFIKIDKEEANFKLAKVTNKKVMYENVPYIFTNDGACFKYCDPAININDTVK IDLETRLVVDYVSFKEGDVVFVMRGEDTGRVGIIKKIQNTTVICEDLSNKEFETSIDSMIVIGDNEESLLISLPEEKGIR LTALEESNLKFGEIVENEVEVN eL32 Vairimorpha necatrix 0.016177029 1 LEVO MEEQFTAPNPLIAIKEEFRKKIKFVRHHSDRYNRVKPSWRKPRGIDSNVRKGLHGQRKMPKIGYKKPDVVRYLLPNGLRK FIIHNADDLEPLICLNRTYCAEIAHSVGAKKRIAIVNRAKELGIHVTNEKARLVEAIPE eS30 Vairimorpha necatrix 0.006917247 1 LEVO MATQINIKKAGKVKNQTPKVAKQEKQRAKTGRCANRRKYEARLEMGYFECNGKMKLNLKA uL30 Vairimorpha necatrix 0.027664209 1 LEVO MSSSVAPNSFKSLQEYEKKQALIIDAKKSEYEQRVLRNKEYALETTEKLLNKYYDSVKELEKTKSDYKSKNMLYIPKEPN FLVVVKIKSSIGAAPRQRSILKLLRLNKTNSAVLVKNNKSMKRMLQLAKDYISYGSISYELLRKLVYKHGVIKVNDKHRK LNNENIEDAFRGELKCIEEIIHNIYFGTEYFKVCANTLIPFRLKSPQGGFKGKKSKGFTEGGNLGNHYDLIGELVERML uS7 Vairimorpha necatrix 0.020970083999999996 1 LEVO MADIKLFEKYSYDDVNCSDESISSYINLSRRFIIPHEGSRAIIKSKTKANLSIINRFVNSLMRNGRNSGKKRLANVCVED AFVIINCLTKKNPLQVLVDAIINAGPREDTARVGRGGSMKRTAVDVSPSKRVSLAIQLLSNGIRSSAFKSRKSLAECIAD ELNNAAANSQNSYAVKKREEIERIAKSNR eL33 Vairimorpha necatrix 0.011214232 1 LEVO MFIPGIFVSHRRALRRIRHTQALIKINNVVNKEQAKNYIGHVVVSKRLNDDKTPRDVEGVVIGVHGNKGLVRVKFERNMP AKSVTNVVEVRLVKKEIN eS31 Vairimorpha necatrix 0.017086039 1 LEVO MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGNKKK KAFKTPKIVKPAVVKEKMGWLKNFRIGTDGSVQVIGKMCEKCDDCSFMRNMKFNYKCGKCGLSENKQEISA eL8 Vairimorpha necatrix 0.023081318 1 LEVO MALGKPKQKKSFVPKLTKDQKDEKERLITKKIYKLAYAIKRPPAIQQFKTILESEDCKRALALFSKYKPETHEERLERLK KSNPQEGPKPILAKQGLRHVTRLIETKKAKFVLVAADVNPAELVLFIPTLCKKMNIPYAIVESQNMLGSVVNMKKTTILA LCDVKGEDKKELEEIIKISNEMFSEQYEQHMTRWGGLRTN eS6 Vairimorpha necatrix 0.024946812000000002 1 LEVO MKLNIADPVNGTQKMYEIEHKAQLKLYNKKIGDQFNGDILDEKFNGYVFEITGGDDAQGFPMSKKYLTPNRIRPLLSKGD VGYRCRRKGVRMRKSVRGAIVSEETNVLAIIVIKKGDNELEGLTDRSNPRTHLPKKDKKLRSMFNIPEGEDIVTYLKDLL SKNLPEGAKLPNIKPTGHIHERKRAQKEASKKAHAERKARNEAQRQQWLKTYNIKQD eL34 Vairimorpha necatrix 0.012299665 1 LEVO MHKIIIHKGRTYKTRSNVRKVVKTPSGKLVARRQKKHAKFHRCHECNTKLLSIARMRPAEFSRQKVSARKVNRPLGSTTC GKCVKEKIIEAFLNDEERIVREKATA RACK1 Vairimorpha necatrix 0.036890561999999995 1 LEVO MSSSDLRVLEPLLAHKQSVTCIQKLRNGSSNVLISASKDKSIFYWSLDSEIESDFGKLLKEYAGKHSKNVNGVAISPNGD MLVSVGSDKMGYIWDVTSKNITASLKGHDRDILSVAINKEGTKIVTGSVDCSIKLWNTKGILINTFGPGLENCHKNWVTC LEFDSRDENILYSGSKDGSVKIWNIEDGTLLKTFVEGNVLDYQNYEKETGEKPKDNELALSVTCLTFCEGGNFLIYGGKN NKVYIVNLDTNECVASVAVENTVRSVTSFESFAGIAIGTDDAIYIYDVCSKSIVATHSLLEMGKGISCNSLVSQGNILYC GLSNGQIYTLEYSKRSE uL6 Vairimorpha necatrix 0.021038893 1 LEVO MTRILTERKISIPGECQVDLTKKCFTFTGPKGKLVHDCSKYLMYFTVEDSEIVIRLWHAKRKQIALATTVTSLLRNSITA VTKGFSYVMKAVHKHFSINFEIKENGKVLLIKNFMGEKAPREFRMKGQAVVKMLPERKGCISIEGPSLPDVSQTAGDITN ACRAKKLDARLFLDGIYVVEKTTMVE eS7 Vairimorpha necatrix 0.018695664 1 LEVO MSAQTETEKQISEIIKKFVTDIDEKKLQEINIQTFIRDNKRKVMTVKVPVEIISKSQINFGSIIKNIKQKFQDYYIILVE NIKNEEKTSWNDCKKIFKGACYPFNINGIRTDVISPEEEIVNVLLEKKCTFNEDEFKMIETAIKGLVGMNVVVSTNFHSL N uL29 Vairimorpha necatrix 0.014798471999999998 1 LEVO MKMDCQSFREKNISELEEEIINLKNDLLQLRQKKVSSTVEPDEIKTARKNIAKALRVRHEKLLEEQCKKYENMPLNKIPK ELRPKKTRAERRKLTKKQANRKVPKVWRRELKNPKIYFAYTE uL16 Vairimorpha necatrix 0.024989234 1 LEVO MARRPGRCYRYLSKKAYHKSRFCKSVPDLKIKIWDSGRRKAEVLDFPICINLISHARENISEQALDAARIAAHHYMVKTA GRDNFHLRVNVYPFHVLRINKMLSCAGADRLQTGMRQSFGKPEGRVARIFFDQIVMSIRTKKGNEAAAMEALRRSRHKFP GKYEVQVSSKFGFTGLYTEEFNKLREEGCLLANGNTVAVLKQKGPISQYMKKLEKQL eS8 Vairimorpha necatrix 0.018885768 1 LEVO NLLIIFLGINHRGEHKRKKSGGKSVLHRKKRNNRRGSQMAATKVGSTKVVEKRARGGNKKYKALRLNEGEFLYKSGNIIN SSKIIEVMYHPTNNDYVRTNTITKSSVVKISSEGIKIQDEEDLKEMYEKGYLYAVINSRPGQVGKAEGEILQGSKLEFYT NLFKKN eL36 Vairimorpha necatrix 0.011134361 1 LEVO MRRGLKKTQVHHQVTKIDIPKIMPKYKKNSKRIEEKKFARSLVREISGYAPYESKAISILKLKDIARATIFLKRRLGSNK RTQKKIKELQIAASE uL5 Vairimorpha necatrix 0.019628955 1 LEVO MKINPMREIKIKKLSIVINVGGGSSTRLNNAAKVLKQLTSQDCLFSKARYTLRNFGIRRNEKISVHVNVSGDKAMEILKK ALKVREYELSKDCFNQTGCFGLGINEHIDLGMKYDPDIGIYGMNFYVDLKRPGDRVSKRKRFRSKIGNKQKISKEDAQKW FVDTFEGILLE uS4 Vairimorpha necatrix 0.021724032999999997 1 LEVO MANQFSKRLVHKPRNPFEKDRLIKEMQIVGKFGLKNKHELRLVEKNFSNDKKEARLLLTSNKVEDISINSRNLLDKLCTA GILNGIDLTSKEEILNGLNSILDLTIDSYLERTLQYKVYSSGLAKSVHHSRWLITKGQISIQGVVIKRPNYVVKAEEEAF IELTPYSWSNNTKITKSQKKKAAKTDEEE eL37 Vairimorpha necatrix 0.010699862999999999 1 LEVO MSKGTASFGKKNKRNHTLCKRCGKMSYHKQLRKCASCAYPQPKMRTPGSIKARRRNALGTGRMRHLKKVIHEHVHGKKVN PILAAFWKTIKQD eL13 Vairimorpha necatrix 0.018980395 1 LEVO MKNNHILPNNHRNAMKRVKEWHNQPSRAQRRAKTRSSKAKVLYPAPLKKLCPIVRCPTIRYNKKQRLGKGFTPEELKEAG LEVNYARRIGIRVDNRRRNMNKETLDLNAQRLKEYLSKITIFKNGKEAKESGVKQHLGRIMPVHKMTPKVEIIKKAEVAS YE uS17 Vairimorpha necatrix 0.018230208999999997 1 LEVO MIDTTLKYKIFPEQKGVSLDPYATAEELKASRRINEMREGFTVPKTAIDATYIDKKCPFTGDVKVTGKIFEGVVYKMKAD KTIVVRINRLVYNKKYRRYGRRHTNVSTHMSPCFEGLIHVGDTVICGETRRLSKTKSSVVLDFRKKSTEGNFKRLEDF eL39 Vairimorpha necatrix 0.006462758999999999 1 LEVO MGSRKTEIIKTRLVRARRSNRAIPAWKSELPEFKDKYNMKRRHWRAKKLKIY eL14 Vairimorpha necatrix 0.01199107 1 LEVO MKFIELGRLVAPIIKKERNIKAIIIGIIDSTFVVLKKSNGENEVCPVSSLILLDEVYDIKNLSSEEIVKLIENKKEEGGA SNDFERFKNKLREEVKKNILREKGI eL40 Vairimorpha necatrix 0.014239559999999998 1 LEVO MSIICRFNNKSSFYAQETAADLKQEISTRNALSYDSILLSSGCRILEDTFQLSSLNGLEINATVKCLGGGNMLDENDREL ANKRNKKLICRRCNVRLSVNATNCRKKGCGSKDLRPKKQLKPKALKK eS12 Vairimorpha necatrix 0.01473195 1 LEVO MSDEEYKPIVEQQYTLRDALTQACRAARISNNLAKGGRECVKKICANNAKFVLLAEDCEPKIKTVATFFAQKNKIPIISI EDRKELGRILNFEKTNLAGKVRNNGCGIALISEFNEKTKASEFILNELETN eL15 Vairimorpha necatrix 0.024032008 1 LEVO MAAADYIREIQKAKQSDIMRYLLRLRVCEYRQRGEVFRVERPTFLQRARTLGYRNKEGVLCYIARVKKGNRKREYNNGNT RGKCKNARIHQITPAVRHQATAEQIVGKRHPNLRVLNSYWVNQDLVYKYFEVIMVDPFHNAIRNDPKLNWICKGVMKHRE CRGLTSASKKSRGLGHGIKYNNTIGGSVRACWKRNVTTSLRRFR uS15 Vairimorpha necatrix 0.017069088 1 LEVO MAKMHSSGRGISTSMKPFSTMFPTWIDVSVDEIKADVLKMNTKGVSSAEIGNKLRDVYGVGDCKTIFDGLSLSRFLEKEG NFIEIPEDVKDLVKRANILRKHINTHSRDKDSKYRLGLIISRLNRCVKHYKKKLRIPSTWKPKLVELIK MDF2 Vairimorpha necatrix 0.019306686 1 LEVO MEKQQNEKKLNEEETEKLALTEEHPKKKVNEEDNLDTLPEKREEDIVFKKVNVEKNKEKEEDHNFSSNYADHKIDLLSVE NKDFPKKQKKVKDSLHLLKENRDRDFGRSKRGHVRNKKQGRETGTRRIKIRKNNYESNDINNYNIKTISKKSRRKEAERQ MDF1 Vairimorpha necatrix 0.019264151999999996 1 LEVO MKYELIAKADFDNIKGLSCDQTYPAILSCTACSFVHPKVVILTSESTIKEPNVYKCNWEMKCHSCKNDIKVSIYKSPSLS TVNIKDRYEDDVLVSYNPVNKNECLLSILECSGGEIREIKNVPLNILTDDLRLFNEKVVDEKRSLAEVYGNNKTYSIINY ELEIRRVK uL13 Vairimorpha necatrix 0.022335594 1 LEVO MHKHIVVDASNHVAGKLASKIAKFLLEGHKVTVLCTERSILTGPLDRSILKFKSFMNKRCRVNPRKGPFHHVLPSMRFKR IIRGMIPYKFHKGKEALKNLECHEGIPSEFINSERVMFPECLLKYCNKPGKKYCLLGELLVKFGWKHSKIVKELTDSILE KEKSRETTSEIEKIVESKEFQDELEKRLLSLK uS11 Vairimorpha necatrix 0.014468901999999999 1 LEVO MTEAIETSNEYTAICHIKATKNNTIIHVTDITGSETICRISGGMRVKSKRDEGSPYAAMIAAQDVAAIIAKRGVKTVHFM LRGAGGVKPKALGAGAQVAVRSIIRSGIKMGRIEDVTPEPTDKVRMKGGHRGRRV eL42 Vairimorpha necatrix 0.012015686 1 LEVO MVNLPKVRRTHCAHCNAHTVHKVSLYKKSKDSEIVSGARRYRLKQKTIGQTKPILKRKAKLTKKIMLKLECPKCKKIQQK VCKRAKHVVMGGEKKRKNEALEY uL22 Vairimorpha necatrix 0.019434642999999998 1 LEVO MAINFAYDVVDPTKVIKSQIDSARVSFKKTRETANTLRKRSLLNAISYLNNVVVKKECVPMRRYARGCGHTRQARAFNQR KGRWPKKSALALLQVLENIKEQAVEKGLEVEKLDLDHVQICRAPKVFGRIFRAHGRVNPFNKSPCHILVAAKVRDLEVNE ENDIMKQEE uS19 Vairimorpha necatrix 0.016041918 1 LEVO MAPTEKKSFRKFSYRGVDFDIIKNMKFSEYAELLPSRLRRRVKRGLSGREVELIKSCIASKEAMTNAHEKPEIVKTHARS AIIWPCMVGSIVGVHVGNGYLPIEIRPEMLGCLLSDFAPTRVHPKHGKPGIADHAGSKFVPLK eL43 Vairimorpha necatrix 0.009826513 1 LEVO MSNGTKKVGISGRFGARYGSTLRKRMKKVLETQKKTYECRACGKTSVKRDVVGIWTCRSCKIKFAGGAYAYVTPAGTTFN NMLKQSNAN eL18 Vairimorpha necatrix 0.021878798999999997 1 LEVO MAITFAKKIIPKSTVIKRKTVKSPNPLLQSLADFYIKVAKNCSNDDIKRIAKRLTMSNKDRPVVRVSEIVKSLNEDSDKV AVVVGKVLDDERLVTLPPMRIVALDWSKSVQEKVERSSGKFFTLDQLFKICSDLNNMVLIQGDRMKRKSAKYWGKSPGQK GSTTLPRANKKQRGGEKRIRMKGRKASNKKSEN uS9 Vairimorpha necatrix 0.017545837999999998 1 LEVO MTGTIKSVITQGKRKTALATCKCSESEEMSILVDKVPYKILSNKLMLSKIKEIICVVDDVNLKNLSFQITTKIKEGVVTH KKGNGEVALAYAVRMAFAKAIVAYYGTYCDEWKKQEIKKVLMSFDRYCLVGDIRKKEPKKFGGPGARARYQKSYR eL19 Vairimorpha necatrix 0.020385169999999998 1 LEVO MESEKKINKSEKARSMAAKVLNCGKNKIWLDPSGKEQINQVSTREQIRQLIDDNVIIKKLDKYNSKGRSRIYKEAVAKGR HMGLGKRLGTANARLNKKTLWIKKIRVMRKELKDMKAEGKINAEEYQLFRKRAKGNLFKNRVTMKEHIAKKQAAELRIKE LEEQAKALKMKKNSN eS17 Vairimorpha necatrix 0.013964233999999999 1 LEVO GNIRNRVIKRAARQIVEKHFLSLDKSFDDNLLVVQDVALVQSKRVRNQIAGYVTHLYKCILKGTAKKLYIKSHEDEREKK ENIMPKDSIMDTEVVEVDPMTLEMLNKNEYRGNFKLITY eL20 Vairimorpha necatrix 0.020986186 1 LEVO MDFAKRNYTVPPFKEYKLSACLTPTSKNPQPQIYESTIYAQNHVFARSKFFKLLNDKYKLKPSKLVLLGAEEIKEQVTGE VKNYGISFVFRCKKGLQNSYREFRAISRVSALDFLFREAAIRIRCKRNDIFVIDIKELEDEEIKTGKVAEFNQPDLKFPV FGKYANTRDLYVPVNTNLSD uS13 Vairimorpha necatrix 0.018051969 1 LEVO MSAENEVRSYTSDPQELQHIIRIFNTNVDGTKRIAHALCAITGVGKRISNAICKRVGVDVLRRAGDLNSDELEKIQKAIA DPTSVGIPTSFFNFKRNPVDGNDVHLVSTRMDAEYRMMLEKGKKMRHVRLCRVACGLKVHGQRSKSNGRHIRAGMVFRRK eL21 Vairimorpha necatrix 0.018675841999999998 1 LEVO MSAGGYRRKTRQLLKQPFRKHGTPGLSVYLATYRIGDYVTISINPSIHKGMPFKYYHGRTGRVFTVNPKSVGVVLHKKVN GRLSVKTIFVRVEHLKKYKGRDAFLERVNKNNEILKEAREKGIKLEYIRQKEEGPREEFILNLDENKPVKVGYEPFIKVY eS19 Vairimorpha necatrix 0.015276587 1 LEVO MDEIYTVKTTDFVNILKKSLQSNTDITLPKDHDILKTSTGKENCPVSDDWYYARMAAILNLIAKKGNMTVEEACVEFGNY KNRGRRPSMFVKADEMFMKSIFENLEKIGYLKENKLTSNAKEIIMDVIQSLSE eL22 Vairimorpha necatrix 0.012327101 1 LEVO MSKDNSQKKEYSIDCTHPASDNLLSPSDLQSHLEEKIKTYTGKKEKLLEVSVNDTTVVVKVNEDIINKQGLKNVIRRFLH AKRLSAFIKVYGDKKNGFEFRYMNVAE uS10 Vairimorpha necatrix 0.011507375 1 LEVO MKVHIDISTTNKSAITLACEKFEAFAENFIESLEKEVLPKQVGLVPTLKTPCGQGTKTWAKYKIIVHQVRYVITSSHDQL EKVIQFLKNFPEININLGIYN uL14 Vairimorpha necatrix 0.016046836999999998 1 LEVO MAAEKKVDSGEKKVARKPHRRMTKGCQMETLLKCADNSGAKLLKVIGVRGYKGRLNRYPAAAPGDIVVVSCKKGKPDLRK KVHYAILVRQKKVWRREDGTHIGFEDNAAVLITAKGDMRGGQISGSLPKEVAECWPKISNSGNSIN eS21 Vairimorpha necatrix 0.0075755119999999995 1 LEVO MFERRICSFTKRPIASSDKSSVQITLADIDENGRLLNTISTYDVCGVVRRNGLSDGYLTDKIFGEEY eL24 Vairimorpha necatrix 0.010363153 1 LEVO MIDGISIYSGRAIPKGSSTVRITNDGKQQLTANKKERSLISRKINPKLVKWTIPSRVVRKKHELFTSSQKNIPRPARIER GFRNISADLLK uS8 Vairimorpha necatrix 0.014515831 1 LEVO MKQLSNLCKAINNASRAGKRQLLLHESNSVTRDFLKQMLKHGYITKYSYVDDKRKGKTIVWLNGRLNKCGAICPNYKVSL DHIENYRSRLLPARQFGHLLFSTEKGIIDHNECIGSNLGGSILGFFY uL23 Vairimorpha necatrix 0.011569789 1 LEVO METVKKETKRIIPKPDIVPQDIIKNIHTSEKAMRNVEMHNTLVLIVDKKFNKRQIRNAVTKLYGCPCIKVNTLIDFKGRK KAYAKLKNDGDAIKIAGQSGAI uS12 Vairimorpha necatrix 0.015494264999999998 1 LEVO MNGLFAANDLIKSRKVKRRSDPYYRKKILGTKYKHSKIGNGPQAKGIVLEKTGVEAKQPNSAVRKIVKIQLIKTGKKISA FVPHDGSLNYIELNDEVVVEGFGKKGHSCGDIPGISYKVVKVQNVSLLALFKGKKEKPSR msL1 Vairimorpha necatrix 0.008746566999999998 1 LEVO MASKLKKSWKDEKKKSKTAIFSLEKQKVMKQERLQKAKILREKIKGLKEKKKQYYLDLARQKADKLEADKLLN uL24 Vairimorpha necatrix 0.016133752 1 LEVO MLAGRKTKSSLRKKQRKALFTAVGKDRLKRMSSHLSEELRSQYGFRSFPVAVGDIVKVHSGPYKGKEGQILEVFLKDYRI TVEGCLEENEEKENVPAKLHPCNVTFVKFNMDNGREKQLEEKKIARVQHIEREQKKIVQ eS24 Vairimorpha necatrix 0.015526099 1 LEVO MAANCELEILLQKSNSLLSRKELSLKIHHEESPVPQKKVITDKLSKLFQTKNDNIVVYDITNTPGTHTSIGRVNIYSNQD DMKRVEKSYMVARKTGETSIRKPRRTRKDERKKAYKRFGTVKRAMKKAERKNK eL27 Vairimorpha necatrix 0.014489164 1 LEVO MLFIPNMIVIPTAGKFAGKKAVVVKNLDNRNVLIAGVQRLPKESEDYMSKVEKRKNDRFLSFVKKVNVRHLMATRYKADI GLGEADYSKIDDLNIKKEVRNKVVEIMKKAQESGKAKFLFTELKFQ eS25 Vairimorpha necatrix 0.013935505999999999 1 LEVO MAKKVQETKEKKALKAASTSKKEKKKWTEIKKKDEARKVFTVSDELLQKVEKEVKKMKIVTIFSLGSKMNLTLSVSKNLL RHCVNKGIISLIHKSQQTSIYGQPIEVQAPVESVVPVEEVVTE eS10 Vairimorpha necatrix 0.011795443 1 LEVO MSLTNSQKVAVMKHFKNKGSLLVYDRKLEKNEILDINNKKLRSYIQSLKDQGYIEEHYVWQQLYCFATESGMKYFNDQLE IPDVIEEGIRMEAVQQKEE 23S rRNA Vairimorpha necatrix 0.7994875 1 AUUUACCCACACAUGGGAUCAAUAGGAUACCAUAACGAUGAAGGUCGUAAUAGAAUACGAAAGUAUAUUAUUUACCUAAU UAAUAUAUUUAUAAUGUAUUGAUAACCCUUUGAACUUAAGCAUAUCAUUAAAAGGAGGAAAAGAAACUAACUAGGAUUUC UUUAGUAGCAGCGAGUGAACAAGAAAUAACCCUCCAUUGUAAUCCUUAAUUGGAGUUGUAAAUGGUUUAUUCUAUUAAUU AUAUUUAUAGAGAAUAUUAUAUUCGUUAUUAAUAGAAUAGAAUAAUGUACUUGAGUAGAGCUGCUUGGUAGUGCAGUUUG AAUAAAGGUAGAAUGAAAUAUCUAAGGUUAAAUAUAAUGGUAUACCGAUAGAAAAUAAGUACUGCGAAGGAACUUGUGAA AAUGUGUGGAGUUUAGCCUUAUUUUUAAGGACCCGUCUUGAAACACGGACCAAGGAGAUUAUAAUUAUAGCAAGAUAAAA AUUAAAUUUUUUAAUCUUUAUUAACUUGAUUAGUUAUAAUUAUAAGACCCGAAACACAGUGAACUAUACAUGUUCUGGUU GAAGAUAAGCAACAGUUUAUUGGAAGACCAUAAUCAUUCUGACGUGCAAAUCGAUGAUUUAAGAUGUGUAUAGUGGCGAA AGACCAAUCGAACUGUGUGGUAGCUGGUUCACAGCGAAAUGUCUCUCAGGACAGCAGUUAUUAUUAUAUAGGACAUAGAU GUAGGACACUGUUAUAGUUUUUUAACUAUGAGAAAUCUUUAAUUCUAUGGAAUUAUAUAAAUUAAAUUUAUAUAAUGAAU CUAUUGUAUAACUAGUGGGCACAUGAUUGUAAGAAUGAUGUGCAAAAAGGGAUGAACCUUAUGAAACAUUAAAUAUUCUA AAUAGUAGAUAUUAUACCAUAAAUAUGAUGAAUACAUUGAGACAGUAGGGCGGUUGUUAUGGAAGUAGAAAUCCGCUAAG AAACGUGUUACAACGUACCUACCGAAUGUAUUAUUGUAUAAAAUGGAAGAAGAUUACUACUUUUAUGAGAUGUUUCUAAU AAAUAUUUAGGUAGCUGUGCAAUUUGUUUGUAUUGAAGUAUAUAUGUGAGUAUAUAUAGAAGAAACAAAUGAGCCGAUCU UGGAGGCAGUAACAAUAUAUUUGUAUAGAUAUAGACUAGGGUUUUCAAUUAUUAUUGAAGUGAAUCGGUGUUAUUUAUAA AAACAAAAAAGAUUAAUAAUUCUUUAUUAAAUUAUUAUAAGGUAACUUGAUAAUGACAGUAUAUUUCAAUAAAUUUAAGA UAAAUGAAUUAAAUUUAAUUUUAACUAUGGAUUGUCAUGAUAAGAAAUAGUUAAUUAUAUAUACUUGAUAAAAAUAAAAU AAUUUUAACCGUACCUAUACCGCAUCAGGUGUCUUUGUAUCAUAACAAAUAUUUUAAAUUAAAGUAAGUAAGGGAAUUCG GCAAAUUAGAUCUGUAACUUUGGGAUAAAGAUUGGCUCUAGCAUGCUAGAACUUUUACUAUGUAAGGAAUCUGACUGUUU AUUAAAAACAUAGCUUUUUGUAUUUACAAGAAGUGAAUUCUGCCCAGUGCAUUUAUUGUUAAAGUUGUGUAAGCGAAUGU AAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAAAUGCCUCGUCAUUUAAUUGGUGACGCGCAUGAAUGGAGCAA CGAGAUUCCUACUGUCCCUACUUACAAUUUUGUGAAACCACGAGACAAGGGAACGGGCUUGUUAUUUAUCAGCGGGGAAA GAAGACCCUGUUGAGCUUGACUUUAGUAUGUUUUAAUAAAUAUUCGGUAUAUUGUAGAGAGGUGGGAGAAGUAUUGUGAA ACCACUAGUAUGUUUGAAUAUUUAUUUAUUAGAAUAUAUGGGGAGUUUGGCUGGGGCGGUACAGCUGUUAAAAAGUAACA CAGCUGUCCUAAGGUAGAUGAAUGAUGGAUGGUAACCAUCAGUUUAUUAUAAGGGAAUAAAUCUGCUUUACUUUAUGCAU AUGACUGUAUUUAGUAGGGAAACCUUGGCCUAGCGAUCCCAAUUACAUUCAUUAUGUAUUGGGUGAUUGAAAAGUUACCA CAGGGAUAACUGGCUUGUAGCAGGCAAGCGAUCAUAGCGACUCUGCUUUUUGAUUCUUCGAUGUCGUCUCUUCUGAUCAU CGUAGUGUAUAUGUUACGAAGUGUUGGAUUGUUCACCCGGUAAUGAGGAACGUGAGAUGGGUUUAGACCGUCGUGAGACA GGUUAGUUUUACCCUACUGUAAGUAUUUUUGAGUGAACUUUGAUAGUACGAGAGGAACUCUAAGUGAUGACCACUGGUAG UGCGAUUAACUAUUAAGUUAUGUUGCUUAGCUACGUCGUUUCGAUUAAGGCUGAAAGCCUCUUAAGCCUGAAGCGUAGCU CAAAGAUACAUUUAGGAGAAUACUACUCUUUUAAGCAGAACUGUAAGAAUGAAGGUGUAUGCCGACAUUUUGAGGUUACU GCUU MAGNESIUM ION 2.4305e-05 174 MG ZINC ION 6.5409e-05 9 ZN singleParticle particle 11 7.5 30.0 Tris-HCL 5.0 MgOAc 25.0 KCl 1.0 DTT 1.0 EDTA COPPER 400 CARBON CONTINUOUS 2.0 GLOW DISCHARGE 30 AIR

50 mA

ETHANE 100 295 FEI VITROBOT MARK IV FEI TALOS ARCTICA FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 0.5 4.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K2 SUMMIT (4k x 4k) SUPER-RESOLUTION 2 3284 0.25 5.55 1 471121 cryoSPARC generated initial model 1 C1 3.4 FSC 0.143 CUT-OFF RELION 3 185445 MAXIMUM LIKELIHOOD RELION MAXIMUM LIKELIHOOD RELION 3 2 RELION 3 emd_4935.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 340 340 340 0 0 0 340 340 340 408.00003 408.00003 408.00003 90.0 90.0 90.0 X Y Z -0.07164885 0.12570506 0.000017274553 0.005440261 1.2 1.2 1.2 0.0199 AUTHOR ::::EMDATABANK.org::::EMD-4935:::: Overall map, state1 4V88 PDB experimental model OTHER REAL emd_4935_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 340 340 340 0 0 0 340 340 340 408.00003 408.00003 408.00003 90.0 90.0 90.0 X Y Z -0.055331603 0.1033417 0.000011161159 0.005085212 1.2 1.2 1.2 AUTHOR ::::EMDATABANK.org::::EMD-4935:::: Additional map, state2