2025-12-17 REL PDBe INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY EXPERIMENTAL_SUMMARY em_admin _em_admin.last_update STRUCTURE_SUMMARY chem_comp_atom chem_comp_bond database_2 em_admin pdbx_entry_details pdbx_modification_feature _database_2.pdbx_DOI _database_2.pdbx_database_accession _em_admin.last_update _pdbx_entry_details.has_protein_modification DATA_COLLECTION em_admin _em_admin.last_update PDBe PDBe 2019-04-23 2019-11-27 2019-12-18 2025-12-17 German Research Foundation (DFG) SFB860 Germany German Research Foundation (DFG) SPP1935 Germany German Federal Ministry for Education and Research EXC 2067/1- 390729940 Germany European Research Council (ERC) TRANSREGULON Germany Volkswagen Foundation Germany German Research Foundation (DFG) Fi 573 7-2 Germany German Research Foundation (DFG) Fi 573 18-1 Germany Structure of the core Vaccinia Virus DNA-dependent RNA polymerase complex Grimm C Hillen HS Vaccinia, RNA polymerase, Transcription, Gene expression, VIRAL PROTEIN Hillen HS Bartuli J Grimm C Dienemann C Bedenk K Szalay AA Fischer U Cramer P Structural Basis of Poxvirus Transcription: Transcribing and Capping Vaccinia Complexes. Cell 179 1525 2019 31835031 doi:10.1016/j.cell.2019.11.023 1097-4172 EMD-4868 other EM volume
Structure of the complete Vaccinia DNA-dependent RNA polymerase complex
 6ric FULLOVERLAP PDB 6RFL unspecified
Structure of the complete Vaccinia DNA-dependent RNA polymerase complex
 PDB 6RID unspecified
Structure of Vaccinia Virus DNA-dependent RNA polymerase elongation complex
 PDB 6RIE unspecified
Structure of Vaccinia Virus DNA-dependent RNA polymerase co-transcriptional capping complex
 EMDB EMD-4868 other EM volume
Structure of the complete Vaccinia DNA-dependent RNA polymerase complex
 EMDB EMD-4888 associated EM volume
Structure of the core Vaccinia Virus DNA-dependent RNA polymerase complex
 Core Vaccinia DNA-dependent RNA polymerase complex Core Vaccinia DNA-dependent RNA polymerase complex 0 1 2 3 4 5 6 7 8 9 0.5 DNA-dependent RNA polymerase subunits 1 1 2 3 4 5 6 7 8 9 Vaccinia virus GLV-1h68 DNA-dependent RNA polymerase subunit rpo147 Vaccinia virus GLV-1h68 0.146995703 1 Vaccinia virus LEVO MAVISKVTYSLYDQKEINATDIIISHVKNDDDIGTVKDGRLGAMDGALCKTCGKTELECFGHWGKVSIYKTHIVKPEFIS EIIRLLNHICIHCGLLRSREPYSDDINLKELSGHALRRLKDKILSKKKSCWNSECMQPYQKITFSKKKVCFVNKLDDINV PNSLIYQKLISIHEKFWPLLEIHQYPANLFYTDYFPIPPLIIRPAISFWIDSIPKETNELTYLLGMIVKNCNLNADEQVI QKAVIEYDDIKIISNNTTSINLSYITSGKNNMIRSYIVARRKDQTARSVIGPSTSITVNEVGMPAYIRNTLTEKIFVNAF TVDKVKQLLASNQVKFYFNKRLNQLTRIRQGKFIKNKIHLLPGDWVEVAVQEYTSIIFGRQPSLHRYNVIASSIRATEGD TIKISPGIANSQNADFDGDEEWMILEQNPKAVIEQSILMYPTTLLKHDIHGAPVYGSIQDEIVAAYSLFRIQDLCLDEVL NILGKYGREFDPKGKCKFSGKDIYTYLIGEKINYPGLLKDGEIIANDVDSNFVVAMRHLSLAGLLSDHKSNVEGINFIIK SSYVFKRYLSIYGFGVTFKDLRPNSTFTNKLEAINVEKIELIKEAYAKYLNDVRDGKIVPLSKALEADYVESMLSNLTNL NIREIEEHMRQTLIDDPDNNLLKMAKAGYKVNPTELMYILGTYGQQRIDGEPAETRVLGRVLPYYLPDSKDPEGRGYILN SLTKGLTGSQYYFSMLVARSQSTDIVCETSRTGTLARKIIKKMEDMVVDGYGQVVIGNTLIKYAANYTKILGSVCKPVDL IYPDESMTWYLEISALWNKIKQGFVYSQKQKLAKKTLAPFNFLVFVKPTTEDNAIKVKDLYDMIHNVIDDVREKYFFTVS NIDFMEYIFLTHLNPSRIRITKETAITIFEKFYEKLNYTLGGGTPIGIISAQVLSEKFTQQALSSFHTTEKSGAVKQKLG FNEFNNLTNLSKNKTEIITLVSDDISKLQSVKINFEFVCLGELNPNITLRKETDKYVVDIIVNRLYIKRAEITELVVEYM IERFISFSVIVKEWGMETFIEDEDNIRFTVYLNFVEPEELNLSKFMMVLPGAANKGKISKFKIPISDYTGYDDFNQTKKL NKMTVELMNLKELGSFDLENVNVYPGVWNTYDIFGIEAAREYLCEAMLNTYGEGFDYLYQPCDLLASLLCASYEPESVNK FKFGAASTLKRATFGDNKALLNAALHKKSEPINDNSSCHFFSKVPNIGTGYYKYFIDLGLLMRMERKLSDKISSQKIKEM EETEDF B9U1I2 2.7.7.6 DNA-dependent RNA polymerase subunit rpo132 Vaccinia virus GLV-1h68 0.133526859 1 Vaccinia virus LEVO MKKNTNSEMDQRLGYKFLVPDPKAGVFYRPLHFQYVSYSNFILHRLHEILTVKRPLLSFKNNTERIMIEISNVKVTPPDY SPIIASIKGKSYDALATFTVNIFKEVMTKEGISITKISSYEGKDSHLIKIPLLIGYGNKNPLDTAKYLVPNVIGGVFINK QSVEKVGINLVEKITTWPKFRVVKPNSFTFSFSSVSPPNVLPTRYRHYKISLDISQLEALNISSTKTFITVNIVLLSQYL SRVSLEFIRRSLSYDMPPEVVYLVNAIIDSAKRITESITDFNIDTYINDLVEAEHIKQKSQLTINEFKYEMLHNFLPHMN YTPDQLKGFYMISLLRKFLYCIFHTSRYPDRDSMVCHRILTYGKYFETLAHDELENYIGNIRNDIMNNHKNRGTYAVNIH VLTTPGLNHAFSSLLSGKFKKSDGSYRTHPHYSWMQNISIPRSVGFYPDQVKISKMFSVRKYHPSQYLYFCSSDVPERGP QVGLVSQLSVLSSITNILTSEYLDLEKKICEYIRSYYKDDISYFETGFPITIENALVASLNPNMICDFVTDFRRRKRMGF FGNLEVGITLVRDHMNEIRINIGAGRLVRPFLVVDNGELMMDVCPELESRLDDMTFSDIQKEFPHVIEMVDIEQFTFSNV CESVQKFRMMSKDERKQYDLCDFPAEFRDGYVASSLVGINHNSGPRAILGCAQAKQAISCLSSDIRNKIDNGIHLMYPER PIVISKALETSKIAANCFGQHVTIALMSYKGINQEDGIIIKKQFIQRGGLDIVTAKKHQVEIPLENFNNKERDRSNAYSK LESNGLVRLNAFLESGDAMARNISSRTLEDDFARDNQISFDVSEKYTDMYKSRVERVQVELTDKVKVRVLTMKERRPILG DKFTTRTSQKGTVAYVADETELPYDENGITPDVIINSTSIFSRKTISMLIEVILTAAYSAKPYNNKGENRPVCFPSSNET SIDTYMQFAKQCYEHSNPKLSDEELSDKIFCEKILYDPETDKPYASKVFFGPIYYLRLRHLTQDKATVRCRGKKTKLIRQ ANEGRKRGGGIKFGEMERDCLIAHGAANTITEVLKDSEEDYQDVYVCENCGDIAAQIKGINTCLRCSKLNLSPLLTKIDT THVSKVFLTQMNARGVKVKLDFERRPPSFYKPLDKVDLKPSFLV B9U1Q1 2.7.7.6 DNA-directed RNA polymerase 35 kDa subunit Vaccinia virus GLV-1h68 0.035430676 1 Vaccinia virus LEVO MQHPREENSIVVELEPSLATFIKQGFNNLVKWPLLNIGIVLSNTSTAVNEEWLTAVEHIPTMKIFYKHIHKILTREMGFL VYLKRSQSERDNYITLYDFDYYIIDKDTNSVTMVDKPTELKETLLHVFQEYRLKSSQTIELIAFSSGTVINEDIVSKLTF LDVEVFNREYNNVKTIIDPDFVFRSPFIVISPMGKLTFFVEVYSWFDFKSCFKDIIDFLEGALIANIHNHMIKVGNCDET VSSYNPESGMLFVNDLMTMNIVNFFGCNSRLESYHRFDMTKVDVELFIKALSDACKKILSASNRL B9U1R2 2.7.7.6 DNA-directed RNA polymerase subunit Vaccinia virus GLV-1h68 0.02136574 1 Vaccinia virus LEVO MNQYNVKYLAKILCLKTEIARDPYAVINRNVLLRYTTDIEYNDLVTLITVRHKIDSMKTVFQVFNESSINYTPVDDDYGE PIIITSYLQKGHNKFPVNFLYIDVVISDLFPSFVRLDTTETNIVNSVLQTGDGKKTLRLPKMLETEIVVKILYRPNIPLK IVRFFRNNMVTGVEIADRSVISVAD B9U1I0 2.7.7.6 DNA-directed RNA polymerase 19 kDa subunit Vaccinia virus GLV-1h68 0.019020087999999997 1 Vaccinia virus LEVO MADTDDIIDYESDDLTEYEDDEEEEEDGESLETSDIDPKSSYKIVESASTHIEDAHSNLKHIGNHISALKRRYTRRISLF EIAGIIAESYNLLQRGRLPLVSEFSDETMKQNMLHVIIQEIEEGSCPIVIEKNGELLSVNDFDKDGLKFHLDYIIKIWKL QKRY B9U1M4 2.7.7.6 DNA-dependent RNA polymerase subunit rpo18 Vaccinia virus GLV-1h68 0.017917195 1 Vaccinia virus LEVO MSSFVTNGYLSVTLEPHELTLDIKTNIRNAVYKTYLHREISGKMAKKIEIREDVELPLGEIVNNSVVINVPCVITYAYYH VGDIVRGTLNIEDESNVTIQCGDLICKLSRDSGTVSFSDSKYCFFRNGNAYDNGSEVTAVLMEAQQGIESSFVFLANIVD S B9U1K4 2.7.7.6 RAP94 transcription factor Vaccinia virus GLV-1h68 0.093667633 1 Vaccinia virus LEVO MDSKETILIEIIPKIKAYLLDANISPKSYDDFISRNKNIFVINLYNVSTITEEDIRLLYTTIEQNIDADDQTLVAIFSYI GYKFEQAVKEEISTSLSFNDKNTTDEMTYNLYDLFFNTLDMYLRQKKISILVNDDVRGDVIVSYKNSDLVSSFNAELEPE IKKIPFNMKNLLPYLEKNLDQLRFSKKYLDFAYLCRHIGIPISKKKYNVRYVFLYKIDGLSIPIIIKDFLDVKYVYLENT GKIYKNSFSEDHNNSLSDWGKVIIPLLKDRHLYSYIFLSSYHLHSYYTDLIARDEPVFVKRKKLDIIEIDEPEAWKRDVR VEFAPCEHQIRLKEAMKVDANYFTKINNFANEFIYYEDGVAYCRVCGINIPIFNLDAADVIKNTVIVSTFNKTIFLSEPY SYFVHSQRFIFNIIMSFDNIMKSQTWVMKYNINRLILNFLIDINSRRQEYEKKFSSEIKRGLFFLRLSANLFESQVSSTE LFYVSKMLNLNYIVALVIILNSSADFIVSYMTSKNKTVEESTLKYAISVVIYDFLVKTRICEKGSLDTIVLFTDVYTSIM PEELDLHFQRITLELRKLVSIQRSALEPNYDVESRGEELPLSALKFFDTSTIIVKTMAPVHTCVEQKIVAPTPSVEPTDA SLKNFKELTCDEDIKILIRVHDTNATKLVIFPSHLKIEIERKKLIIPLKSLYITNTLKYYYSNSYLYVFRFGDPMPFEEE LIDHEHVQYKINCYNILRYHLLPDSDVFVYFSNSLNREALEYAFYIFLSKYVNVKQWIDENITRIKELYMINFNN B9U1I7 DNA-dependent RNA polymerase subunit rpo7 Vaccinia virus GLV-1h68 0.007299715 1 Vaccinia virus LEVO MVFQLVCSTCGKDISHERYKLIIRKKSLKDVLVSVKNECCRLKLSTQIEPQRNLTVQPLLDIN B9U1G3 2.7.7.6 DNA-directed RNA polymerase 30 kDa polypeptide Vaccinia virus GLV-1h68 0.029834358999999998 1 Vaccinia virus LEVO MENVYISSYSSNEQTSMAVAATDIRELLSQYVDDANLEDLIEWAMEKSSKYYIKNIGNTKSNIEETKFESKNNIGIEYSK DSRNKLSYRNKPSIATNLEYKTLCDMIKGTSGTEKEFLRYLLFGIKCIKKGVEYNIDKIKDVSYNDYFNVLDEKYNTPCP NCKSRNTTPMMIQTRAADEPPLVRHACRDCKQHFKPPKFRAFRNLNVTTQSIHENKEITEILPDNNPSPPESPEPASPID DGLIRATFDRNDEPPEDDE B9U1D1 2.7.7.6 MAGNESIUM ION 2.4305e-05 1 MG ZINC ION 6.5409e-05 4 ZN singleParticle particle 7.5 UltrAuFoil GOLD GLOW DISCHARGE ETHANE 95 277 FEI VITROBOT MARK II FEI TITAN KRIOS OTHER BRIGHT FIELD FIELD EMISSION GUN 300 2.7 130000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K2 SUMMIT (4k x 4k) COUNTING 1 3609 1.41 1 479618 RELION 3.0 Warp PHASE FLIPPING AND AMPLITUDE CORRECTION EMD-3218 1 C1 FOURIER SPACE 2.8 FSC 0.143 CUT-OFF RELION 3.0 152591 ANGULAR RECONSTITUTION RELION 3.0 ANGULAR RECONSTITUTION RELION 3.0 6 RELION 3.0 emd_4888.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 243.0 243.0 243.0 90.0 90.0 90.0 X Y Z -0.091687046 0.16102602 0.00041528157 0.005382401 0.81 0.81 0.81 0.0275 AUTHOR Post-processed map used for building. AB INITIO MODEL REAL emd_4888_msk_1.map emd_4888_msk_4.map emd_4888_msk_2.map emd_4888_msk_3.map emd_4888_additional_3.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 243.0 243.0 243.0 90.0 90.0 90.0 X Y Z -0.02547688 0.050317608 0.00030265914 0.0021413304 0.81 0.81 0.81 AUTHOR Rap94 Domain2 focused 3D refinement half-map 2. emd_4888_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 243.0 243.0 243.0 90.0 90.0 90.0 X Y Z -0.021204112 0.0590029 0.00028197924 0.002395323 0.81 0.81 0.81 AUTHOR Rap94 CTD focused 3D refinement half-map 1. emd_4888_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 243.0 243.0 243.0 90.0 90.0 90.0 X Y Z -0.020897208 0.057635725 0.00028286627 0.0023998253 0.81 0.81 0.81 AUTHOR Rap94 CTD focused 3D refinement half-map 1. emd_4888_additional_7.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 243.0 243.0 243.0 90.0 90.0 90.0 X Y Z -0.023466052 0.05322664 0.00029391705 0.002083915 0.81 0.81 0.81 AUTHOR Rpo30 focused 3D refinement map. emd_4888_additional_6.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 243.0 243.0 243.0 90.0 90.0 90.0 X Y Z -0.11294675 0.2034687 0.00009303671 0.00331769 0.81 0.81 0.81 AUTHOR Rap94 CTD focused 3D refinement post-processed map. emd_4888_additional_14.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 243.0 243.0 243.0 90.0 90.0 90.0 Z Y X -35.344326000000002 53.254874999999998 0.016207732 1.2201115 0.81 0.81 0.81 AUTHOR Composite map used for real space refinement. emd_4888_additional_13.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 243.0 243.0 243.0 90.0 90.0 90.0 X Y Z -0.014295556 0.046134327 0.0002959781 0.0026239944 0.81 0.81 0.81 AUTHOR Global 3D refinement map. emd_4888_additional_12.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 243.0 243.0 243.0 90.0 90.0 90.0 X Y Z -0.020037342 0.04949196 0.0003090804 0.002053253 0.81 0.81 0.81 AUTHOR Rap94 CTD focused 3D refinement map. emd_4888_additional_11.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 243.0 243.0 243.0 90.0 90.0 90.0 X Y Z -0.017255276 0.055663224 0.000297545 0.0022502905 0.81 0.81 0.81 AUTHOR Rap94 Domain2 focused 3D refinement map. emd_4888_additional_10.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 243.0 243.0 243.0 90.0 90.0 90.0 X Y Z -0.16969918 0.2676818 0.00005531033 0.0031255065 0.81 0.81 0.81 AUTHOR Rpo30 focused 3D refinement post-processed map. emd_4888_additional_5.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 243.0 243.0 243.0 90.0 90.0 90.0 X Y Z -0.12526114 0.17460333 0.000054033902 0.002148173 0.81 0.81 0.81 AUTHOR Rap94 Domain2 focused 3D refinement post-processed map. emd_4888_additional_4.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 243.0 243.0 243.0 90.0 90.0 90.0 X Y Z -0.022358319 0.050896186 0.0002987005 0.0021439139 0.81 0.81 0.81 AUTHOR Rap94 Domain2 focused 3D refinement half-map 1. emd_4888_additional_9.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 243.0 243.0 243.0 90.0 90.0 90.0 X Y Z -0.02457453 0.057074532 0.00028977732 0.0021354652 0.81 0.81 0.81 AUTHOR Rpo30 focused 3D refinement half-map 2. emd_4888_additional_8.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 243.0 243.0 243.0 90.0 90.0 90.0 X Y Z -0.025245344 0.05412943 0.0002864312 0.0021326465 0.81 0.81 0.81 AUTHOR Rpo30 focused 3D refinement half-map 1. emd_4888_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 243.0 243.0 243.0 90.0 90.0 90.0 X Y Z -0.021112293 0.054218717 0.00028569193 0.003417795 0.81 0.81 0.81 AUTHOR Global 3D refinement half-map 2. emd_4888_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 243.0 243.0 243.0 90.0 90.0 90.0 X Y Z -0.021953423 0.0547155 0.00028276362 0.0034216521 0.81 0.81 0.81 AUTHOR Global 3D refinement half-map 1.