2026-08-26 REL RCSB INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY DATABASE_REFERENCES citation citation_author em_admin _citation.pdbx_database_id_PubMed _citation.title _em_admin.last_update EXPERIMENTAL_SUMMARY citation citation_author em_admin _citation.pdbx_database_id_PubMed _citation.title _em_admin.last_update DATABASE_REFERENCES citation em_admin _citation.journal_volume _citation.page_first _citation.page_last _em_admin.last_update EXPERIMENTAL_SUMMARY citation em_admin _citation.journal_volume _citation.page_first _citation.page_last _em_admin.last_update RCSB RCSB 2025-01-30 2026-07-08 2026-07-08 2026-08-26 National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) United States CryoEM structure of WNV (Kunjin strain) with the Fab of WNV-86 antibody Khare B Klose T Complex, VIRUS, VIRUS-IMMUNE SYSTEM complex Khare B Arnaud CA Klose T Crowe Jr JE Kuhn RJ A distinct E dimer epitope underlies selective recognition by a protective human West Nile virus antibody. Embo Rep. UK 27 4583 4601 2026 42373829 doi:10.1038/s44319-026-00851-z 1469-3178 9n3b FULLOVERLAP EMDB EMD-48850 associated EM volume
CryoEM structure of WNV (Kunjin strain) with the Fab of WNV-86 antibody
 West Nile virus (Kunjin) West Nile virus (Kunjin) 0 1 2 3 4 West Nile virus (Kunjin) Kunjin virus (STRAIN MRM61C) Aves E and M 460.0 3 VIRION STRAIN true false Envelope protein E Kunjin virus 0.053714086 3 Aedes albopictus C6/36 cell densovirus LEVO FNCLGMSNRDFLEGVSGATWVDLVLEGDSCVTIMSKDKPTIDVKMMNMEAANLAEVRSYCYLATVSELSTKAACPTMGEA HNDKRADPSFVCKQGVVDRGWGNGCGLFGKGSIDTCAKFACSTKATGRTILKENIKYEVAIFVHGPTTVESHGNYFTQTG AAQAGRFSITPAAPSYTLKLGEYGEVTVDCEPRSGIDTSAYYVMTVGTKTFLVHREWFMDLNLPWSSAESNVWRNRETLM EFEEPHATKQSVIALGSQEGALHQALAGAIPVEFSSNTVKLTSGHLKCRVKMEKLQLKGTTYGVCSKAFRFLGTPADTGH GTVVLELQYTGTDGPCKIPISSVASLNDLTPVGRLVTVNPFVSVSTANAKVLIELEPPFGDSYIVVGRGEQQINHHWHKS GSSIGKAFTATLKGAQRLAALGDTAWDFGSVGGVFTSVGKAVHQVFGGAFRSLFGGMSWITQGLLGALLLWMGINARDRS IALTFLAVGGVLLFLSVNVH P14335 Small envelope protein M Kunjin virus 0.008221576 3 Aedes albopictus C6/36 cell densovirus LEVO SLTVQTHGESTLSNKKGAWMDSTKATRYLVKTESWILRNPGYALVAAVIGWMLGSNTMQRVVFAVLLLLVAPAYS P14335 WNV-86 heavy chain Homo sapiens 0.013623165999999999 1 LEVO EVQLVESGGGLVQPGRSLRLCCAASGFSFDDFAMHWVRQAPGKGLEWVSGINWNSGHIGYADSVKGRFTISRDNAKNSLC LQMNSLRPEDTALYYCAKDRAYYFGSGTSGGAFDVWGQGTLVTVSS WNV-86 light chain Homo sapiens 0.011549895 1 LEVO DIVMTQSPSSLSASVGDRVTITCRASQNIISYLNWYQQKPGKAPKLLIYDASSLQSGVPSRFSGSGSGTDFTLTISSLQP EDFATYYCQRSFSTPLTFGGGTKVEIK 2-acetamido-2-deoxy-beta-D-glucopyranose 0.000221208 3 NAG singleParticle particle 8.0
10 mM Tris pH 8.0, 120 mM NaCl, 1 mM EDTA
 ETHANE TFS KRIOS OTHER BRIGHT FIELD FIELD EMISSION GUN 300 0.9 2.0 GATAN K2 SUMMIT (4k x 4k) 24.0 1 PHASE FLIPPING ONLY I 3.8 FSC 0.143 CUT-OFF cryoSPARC 4.5.3 12760 PROJECTION MATCHING PROJECTION MATCHING emd_48850.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 164 164 164 0 0 0 164 164 164 283.72 283.72 283.72 90.0 90.0 90.0 X Y Z -1.2724463 2.213085 0.01864997 0.0981853 1.73 1.73 1.73 0.144 AUTHOR Localized reconstruction of one asymmetric unit REAL emd_48850_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 450 450 450 0 0 0 450 450 450 778.5 778.5 778.5 90.0 90.0 90.0 X Y Z -0.3731659 1.2579545 0.008641518 0.09227271 1.73 1.73 1.73 AUTHOR Full icosahedrally averaged virus map emd_48850_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 164 164 164 0 0 0 164 164 164 283.72 283.72 283.72 90.0 90.0 90.0 X Y Z -0.3799108 0.85611975 0.010134018 0.08759297 1.73 1.73 1.73 AUTHOR Half Map A emd_48850_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 164 164 164 0 0 0 164 164 164 283.72 283.72 283.72 90.0 90.0 90.0 X Y Z -0.41302472 0.90841365 0.010071862 0.087406844 1.73 1.73 1.73 AUTHOR Half Map B