2020-07-29 REL PDBe PDBe PDBe 2019-04-17 2019-06-12 2019-06-12 2020-07-29 European Research Council 759517 Netherlands In situ structure of a hexameric IgM complex bound to complement components C1 and two molecules of C4b Sharp TH Sharp TH Boyle AL Diebolder CA Kros A Koster AJ Gros P Insights into IgM-mediated complement activation based on in situ structures of IgM-C1-C4b. Proc.Natl.Acad.Sci.USA US 116 11900 11905 2019 31147461 doi:10.1073/pnas.1901841116 1091-6490 0040 PNASA6 EMD-4878 associated EM volume hexameric IgM-C1-C4b2 hexameric IgM-C1-C4b2 0
Map contains a complex of hexameric IgM, complement component C1 and two molecules of complement component C4b
Homo sapiens Human serum 2.116 subtomogramAveraging particle 7.4 PBS PBS COPPER CARBON LACEY GLOW DISCHARGE ETHANE 277.15 LEICA EM GP
FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 0.5 0.5 33000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN VOLTA PHASE PLATE GIF Quantum LS 20 GATAN K2 SUMMIT (4k x 4k) COUNTING 2.4 1.48
Exposures of 2.4 sec were dose-fractionated into 6 movie frames per tilt angle. The total dose for each tilt series was 80 e-/A^2. Focusing to -300 nm was performed before each image acquisition using a low-dose routine
 1
Raw frames were aligned using alignframes and tomograms were reconstructed using weighted back-projection from the software program IMOD.
1 C1 26.7 FSC 0.143 CUT-OFF Dynamo 259 54 1522 EMAN2 2.2 3 Dynamo NOT APPLICABLE Dynamo emd_4878.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 160 160 160 0 0 -1 160 160 160 688.0 688.0 688.0 90.0 90.0 90.0 X Y Z -1.5185909 2.9356854 0.016613847 0.15100342 4.3 4.3 4.3 0.5 AUTHOR 1DEE 4JVU 4BA8 4JVW 1PK6 6F1C 1GPZ 4J1Y 5JTW RIGID BODY FIT REAL