2024-05-22 REL PDBe PDBe PDBe 2019-04-17 2019-09-04 2019-09-04 2024-05-22 Medical Research Council (United Kingdom) MC_UP_1201/5 United Kingdom Human 20S Proteasome Toste Rego A da Fonseca PCA proteasome, HYDROLASE Toste Rego A da Fonseca PCA Characterization of Fully Recombinant Human 20S and 20S-PA200 Proteasome Complexes. Mol.Cell US 76 138 147.e5 2019 31473102 doi:10.1016/j.molcel.2019.07.014 1097-2765 2168 MOCEFL 6rgq FULLOVERLAP Human 20S Proteasome Human 20S Proteasome 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 Homo sapiens 0.716 Proteasome subunit alpha type-6 Homo sapiens 0.027432459 2 Spodoptera frugiperda LEVO MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVM TGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYY CGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLV ALAERD P60900 3.4.25.1 Proteasome subunit alpha type-2 Homo sapiens 0.025927534999999998 2 Spodoptera frugiperda LEVO MAERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMG PDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKA TAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAGFRRLTPTEVKDYLAAIA P25787 3.4.25.1 Proteasome subunit alpha type-4 Homo sapiens 0.029525842 2 Spodoptera frugiperda LEVO MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGIT SDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWK ATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKKH EEEEAKAEREKKEKEQKEKDK P25789 3.4.25.1 Proteasome subunit alpha type-7 Homo sapiens 0.027929891 2 Spodoptera frugiperda LEVO MSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADA RIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANA IGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEKEENE KKKQKKAS O14818 3.4.25.1 Proteasome subunit alpha type-5 Homo sapiens 0.026435977 2 Spodoptera frugiperda LEVO MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSG LIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSG TFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQNFHMFTKEELEEVIKD I P28066 3.4.25.1 Proteasome subunit alpha type-1 Homo sapiens 0.029595627 2 Spodoptera frugiperda LEVO MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTAD ARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMS IGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERP QRKAQPAQPADEPAEKADEPMEH P25786 3.4.25.1 Proteasome subunit alpha type-3 Homo sapiens 0.028469252 2 Spodoptera frugiperda LEVO MSSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAG LLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYG YWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEKYA KESLKEEDESDDDNM P25788 3.4.25.1 Proteasome subunit beta type-6 Homo sapiens 0.021921835999999997 2 Spodoptera frugiperda LEVO TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA SLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANAL ALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAVATLPPA P28072 3.4.25.1 Proteasome subunit beta type-7 Homo sapiens 0.025321979999999997 2 Spodoptera frugiperda LEVO TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN RMLKQMLFRYQGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIA AGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKGTRLGRYRCEKGTTAVLTEKITPLEIEVLEETVQTMDTS Q99436 3.4.25.1 Proteasome subunit beta type-3 Homo sapiens 0.022972896 2 Spodoptera frugiperda LEVO MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGR QIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDP DHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLKARMD P49720 3.4.25.1 Proteasome subunit beta type-2 Homo sapiens 0.022864277 2 Spodoptera frugiperda LEVO MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAA ANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELL RKCLEELQKRFILNLPTFSVRIIDKNGIHDLDNISFPKQGS P49721 3.4.25.1 Proteasome subunit beta type-5 Homo sapiens 0.022484368999999997 2 Spodoptera frugiperda LEVO TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS KLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAI YQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHEKYSGSTP P28074 3.4.25.1 Proteasome subunit beta type-1 Homo sapiens 0.023578986 2 Spodoptera frugiperda LEVO RFSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNN KAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQN VEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVSLRKD P20618 3.4.25.1 Proteasome subunit beta type-4 Homo sapiens 0.02441474 2 Spodoptera frugiperda LEVO TQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDG HSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVL SQTEARDLVERCMRVLYYRDARSYNRFQIATVTEKGVEIEGPLSTETNWDIAHMISGFE P28070 3.4.25.1 singleParticle particle 0.1 7.4 50.0 Tris-HCl Trizma buffer 100.0 NaCl Sodium Chloride 1.0 EDTA Ethylenediaminetetraacetic acid ETHANE 95 295.15 FEI VITROBOT MARK IV
The sample was homogeneous
 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 95000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN FEI FALCON III (4k x 4k) COUNTING 483 60.0 45.7
411 images were selected for further analysis, based on their contrast and the recovery of isotropic Thon rings to high resolution.
 1 58281 EMD-2981 C2 2.6 FSC 0.143 CUT-OFF cisTEM 1.0.0. 50885 MAXIMUM LIKELIHOOD cisTEM 1.0.0. MAXIMUM LIKELIHOOD cisTEM 1.0.0. emd_4877.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 324.0 324.0 324.0 90.0 90.0 90.0 X Y Z -9.675511999999999 18.005306000000001 -0.018720854 0.7688835 0.81 0.81 0.81 2.6 AUTHOR 5LE5 PDB experimental model RIGID BODY FIT REAL