2025-04-16 REL RCSB INITIAL_RELEASE REPOSITORY RCSB RCSB 2025-01-07 2025-04-16 2025-04-16 2025-04-16 National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) AI155453 United States Genetiocally detoxified pertussis toxin in complex with hu1B7 Fab and hu11E6 Fab Goldsmith JA McLellan JS Toxin, Pertussis, Antibody Goldsmith JA Nguyen AW Wilen RE Wijagkanalan W McLellan JS Maynard JA Structural basis for neutralizing antibody binding to pertussis toxin. Proc.Natl.Acad.Sci.USA US 122 e2419457122 e2419457122 2025 40172968 doi:10.1073/pnas.2419457122 1091-6490 0040 PNASA6 9mr7 FULLOVERLAP Ternary complex of integrin alphaM/beta2 ectodomain with adenylate cyclase toxin RTX domain and M1F5 Fab Ternary complex of integrin alphaM/beta2 ectodomain with adenylate cyclase toxin RTX domain and M1F5 Fab 0 1 2 3 4 5 6 7 8 9 Homo sapiens Pertussis toxin subunit 1 Bordetella pertussis 0.026148666 1 Bordetella pertussis LEVO DDPPATVYKYDSRPPEDVFQNGFTAWGNNDNVLDHLTGRSCQVGSSNSAFVSTSSSRRYTEVYLEHRMQEAVEAERAGRG TGHFIGYIYEVRADNNFYGAASSYFEYVDTYGDNAGRILAGALATYQSGYLAHRRIPPENIRRVTRVYHNGITGETTTTE YSNARYVSQQTRANPNPYTSRRSVASIVGTLVRMAPVIGACMARQAESSEAMAAWSERAGEAMVLVYYESIAYSF P04977 2.4.2.- Pertussis toxin subunit 2 Bordetella pertussis 0.021913676 1 Bordetella pertussis LEVO STPGIVIPPQEQITQHGGPYGRCANKTRALTVAELRGSGDLQEYLRHVTRGWSIFALYDGTYLGGEYGGVIKDGTPGGAF DLKTTFCIMTTRNTGQPATDHYYSNVTATRLLSSTNSRLCAVFVRSGQPVIGACTSPYDGKYWSMYSRLRKMLYLIYVAG ISVRVHVSKEEQYYDYEDATFETYALTGISICNPGSSLC P04978 Pertussis toxin subunit 3 Bordetella pertussis 0.021889866999999997 1 Bordetella pertussis LEVO VAPGIVIPPKALFTQQGGAYGRCPNGTRALTVAELRGNAELQTYLRQITPGWSIYGLYDGTYLGQAYGGIIKDAPPGAGF IYRETFCITTIYKTGQPAADHYYSKVTATRLLASTNSRLCAVFVRDGQSVIGACASPYEGRYRDMYDALRRLLYMIYMSG LAVRVHVSKEEQYYDYEDATFQTYALTGISLCNPAASIC P04979 Pertussis toxin subunit 4 Bordetella pertussis 0.012072425999999999 2 Bordetella pertussis LEVO DVPYVLVKTNMVVTSVAMKPYEVTPTRMLVCGIAAKLGAAASSPDAHVPFCFGKDLKRPGSSPMEVMLRAVFMQQRPLRM FLGPKQLTFEGKPALELIRMVECSGKQDCP P0A3R5 Pertussis toxin subunit 5 Bordetella pertussis 0.010951523999999999 1 Bordetella pertussis LEVO GLPTHLYKNFTVQELALKLKGKNQEFCLTAFMSGRSLVRACLSDAGHEHDTWFDTMLGFAISAYALKSRIALTVEDSPYP GTPGDLLELQICPLNGYCE P04981 hu1B7 Fab light chain Mus musculus 0.023137705 1 Homo sapiens LEVO QIVLTQSPATLSVSPGERVTLTCSASSSVSFMYWYQQKPGRAPKPLIYLTSNLPSGVPARFSGSGSGTSYTLTINSLEAE DAATYYCQQWSSHPPTFGSGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQE SVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC hu1B7 Fab heavy chain Mus musculus 0.023868709 1 Homo sapiens LEVO QVQLVQSGAEVKKPGASVKVSCKASGYKFTSYWMHWVRQAPGQGLEWIGNIFPGSGSTNYAQKFQGRVTLTVDTSTSTAY MELSSLRSEDTAVYYCTRWLSGAYFDYWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWN SGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDK hu11E6 Fab light chain Mus musculus 0.023421962999999997 2 Homo sapiens LEVO DIVMTQSPSSLSASVGDRVTISCRASQDIDNYLSWFQQKPGGTVKLLIYYTSRLHSGVPSRFSGSGSGTDYTLTISSLQP EDIATYFCQQGNTFPWTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ ESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC hu11E6 Fab heavy chain Mus musculus 0.024733768 2 Homo sapiens LEVO EVQVVESGGGLVQPGRSLRLSCTTSGFTFTDYYVSWVRQAPGKALEWLGFIRNKVNGYTTEFSSSVKGRFTISRDNSKSI LYLQMNSLKIEDTAVYYCARVSYYGRGWYFDYWGQGTTLTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV TVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK singleParticle particle 7.5 ETHANE TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 0.8 2.2 GATAN K3 (6k x 4k) 80.0 1 3K6S 3.56 FSC 0.143 CUT-OFF 316937 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_48554.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 350 350 350 0 0 0 350 350 350 385.0 385.0 385.0 90.0 90.0 90.0 X Y Z -0.21250474 1.4145198 -0.00030964022 0.041326873 1.1 1.1 1.1 0.644 AUTHOR Reconsctruction of pertussis toxin bound to hu1B7 and hu11E6 emd_48554_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 350 350 350 0 0 0 350 350 350 385.0 385.0 385.0 90.0 90.0 90.0 X Y Z -0.0017658122 2.125501 0.0006777259 0.019015452 1.1 1.1 1.1 AUTHOR Sharpened map for reconstruction of pertussis toxin bound to hu1B7 and hu11E6 emd_48554_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 350 350 350 0 0 0 350 350 350 385.0 385.0 385.0 90.0 90.0 90.0 X Y Z -0.45635065 1.6298146 0.0011938309 0.057269137 1.1 1.1 1.1 AUTHOR Half-map A for reconstruction of pertussis toxin bound to hu1B7 and hu11E6 emd_48554_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 350 350 350 0 0 0 350 350 350 385.0 385.0 385.0 90.0 90.0 90.0 X Y Z -0.41299275 1.7528042 0.0012506561 0.05721626 1.1 1.1 1.1 AUTHOR Half-map B for reconstruction of pertussis toxin bound to hu1B7 and hu11E6