2024-05-22 REL PDBe PDBe PDBe 2019-04-06 2019-04-17 2019-04-17 2024-05-22 Cryo-EM structure of the anti-feeding prophage (AFP) baseplate, 6-fold symmetrised Desfosses A Anti-feeding prophage, secretion system, AFP, contractile, VIRUS LIKE PARTICLE Desfosses A Venugopal H Joshi T Felix J Jessop M Jeong H Hyun J Heymann JB Hurst MRH Gutsche I Mitra AK Atomic structures of an entire contractile injection system in both the extended and contracted states. Nat Microbiol UK 4 1885 1894 2019 31384001 doi:10.1038/s41564-019-0530-6 2058-5276 6rao FULLOVERLAP Cryo-EM structure of the anti-feeding prophage (AFP) baseplate, 6-fold symmetrised Cryo-EM structure of the anti-feeding prophage (AFP) baseplate, 6-fold symmetrised 0 1 2 3 4 5 6 7 8 9
Note that the needle is not resolved here because of 6-fold symmetry imposition
Serratia entomophila Afp1 Serratia entomophila 0.016449449 2 Escherichia coli LEVO MAITADDIAVQYPIPTYRFIVTLGDEQVPFTSASGLDINFDTIEYRDGTGNWFKMPGQRQAPNITLSKGVFPGKNAMYEW INAIQLNQVEKKDIMISLTNEAGTEVLVSWNVSNAFPTSLTSPSFDATSNEIAVQQITLMADRVTIQTA Q6HAD8 Afp2 Serratia entomophila 0.038784355 1 Escherichia coli LEVO MTVTTTYPGVYLSEDAVSSFSVNSAATAVPLFAYDSENTNTINKPIQVFRNWAEFTVEYPTPLEDAFYTSLSLWFMHGGG KCYLVNEANIADAVAQYDDITLIVAAGTDTTTYTAFTTVVGQGYRIFGLFDGPKEKIAGTAKPDEVMEEYPTSPFGAVFY PWGTLASGAAVPPSAIAAASITQTDRTRGVWKAPANQAVNGVTPAFAVSDDFQGKYNQGKALNMIRTFSGQGTVVWGART LEDSDNWRYIPVRRLFNAVERDIQKSLNKLVFEPNSQPTWQRVKAAVDSYLHSLWQQGALAGNTPADAWFVQVGKDLTMT QEEINQGKMIIKIGLAAVRPAEFIILQFSQDIAQ Q6HAD7 Afp3 Serratia entomophila 0.048777565999999994 1 Escherichia coli LEVO MATVTSVPGVYIEEDASPAMSVSASATAVPLFVARFTPLKPELAGVITRIGSWLDYTILFDSNVPSSARVTVSSTAVEPS PEFDALETASSKATTTYTYQIDDTEVVDPTASVALRLYFQNGGGPCYLYPLEKADDNGPLAALPDLIDEVGEITLLASPD PDETYRTAVYGALAASLDQHKGYFLLADSVNGDAPSAVGGSAQVAVYYPNVEVPHTRKLDDAEVAIDGYLDDEGKAVTTL AALRVVNTEFAGEIAQSLSGDLSAPLSLPPSALIAGVYGKTDGERGVWKAPANVVLNGVSDVSVRVTNEQQAELNPKGIN VIRHFSDRGLVVWGSRTQKDDDDWRYIPVRRLFDAAERDIKKALQPMVFEPNSQLTWKRVQTAIDNYLYRLWQQGALAGN KAEEAYFVRVGKGITMTQDEINQGKMIIQVGMAAVRPAEFIILKFTQDMSQ Q6HAD6 Afp5 Serratia entomophila 0.017026539 1 Escherichia coli LEVO MSTPAVSHRFLVNFLFNNIPNPFDIAFQRISGLSRTLEVSQHREGGENVRNLWLAEQVNHGSLVLERGVMNASPLTLQFD RVLRRESTQWANVVIMLLNELSLPVTTWTLSHALPVRWQMGDLDAGSNQVLINTLELRYQDMRMLGVKL Q6HAD4 Afp9 Serratia entomophila 0.015693883999999998 1 Escherichia coli LEVO MSNDILKATLGQCWAFPPRFSPDTGVSLTAGVEAVMQSLRVLFMTEPGERIMRESYGGGMHDFIFENITDELLANIHNRI EESILRHEPRALLKDVIIQPDKQEASRLRAQITVYLAGSDLVETVDGTLNIHDGQTLRLL Q6HAD0 Afp4 Serratia entomophila 0.045565633 1 Escherichia coli LEVO MTMVLPGVSYNETLLTQASNDDPVTMPLFIGYTPPDTAIPVTVMQPVSVGSLTQANSLFGQRGTLAYSLRHFFENGGLQC YVLPLGPGKGEPAARLQELIAALQTPQMLETLLADDKTGLVLVPELSELNEVSSTSLSAEGVDAAEVDADALWYQGWQVL LTLCRQAPQRFALLELPEDPASAVTLTQQSFSADQCQRGAAWWPRLETSYQDESSAPVVLSPLPAVAAAIQRSAHDNGVW KAPANIALAKTRRPTQSILTSQALLDNQGVSCNLIRSFVGKGVRLWGCRTLLNEENTAWRYIQIRLLVSSVEHYLSKLAR AYLFEPNTAPTWMKLKGQVWTWLRQQWLAGAFFGTVEDEAFSLSIGLDETMTEDDIRHGKMILQVRLALLAPAEFIAISL TLDLRDGTASAQTGGQS Q6HAD5 Afp7 Serratia entomophila 0.025259434 1 Escherichia coli LEVO MSLLERGLSKLTLNAWKDREGKIPAGSMSAMYNPETIQLDYQTRFDTEDTINTASQSNRYVISEPVGLNLTLLFDSQMPG NTTPIETQLAMLKSLCAVDAATGSPYFLRITWGKMRWENKGWFAGRARDLSVTYTLFDRDATPLRATVQLSLVADESFVI QQSLKTQSAPDRALVSVPDLASLPLLALSAGGVLASSVDYLSLAWDNDLDNLDDFQTGDFLRATKGEEV Q6HAD2 Afp11 Serratia entomophila 0.067327516 1 Escherichia coli LEVO MSDLEQLKQILGNGLTDQTFLLEPRTGKGLLNLMAKYTEAVPFAGHTDADWKDFWMAGCTLEALSDIYQYPGLAEKKLPV QQAFLLALLHLLETPRAMLNTVPARHRSLYYRDLLGFAPRAPQPDSVAVSFTLQRNSSPYALPAGSLLDGGQDSAGNSIT YQTDDSLLITGQQLEQLCWTAQVGETWKRYTAIDSATGVTLPAEGLRLFTATGQGTDTKEKAPELYLGFSGTSAQDTLSL YWSVRASSALDVTWWYYQGTKWASLDAELQDNTASLSVSNLWRARLPADSQPGSGLPQDDEPLEAGYYWIKGTLKENKEA KDENSPAEAMPQLQAVLANAMTATLNVAQAIDDSHFSQPLPANTINQLVTPVAAISDVRQPLPSVGGQPRETEMAMLQRA APRIAHRQRAITWNNMRSLLMEHYPEIFDVRFPDVDKLSRLPALEVQSLMVIPDGRYGDNDDALRPALSNGRLSRMAQWL SQYTSLWAAPTLKNPKYIDVTARYRVTFVVGIRPDYGYRQLAAQLQHDYMPWATDRRQAVTPGNQVDYYQLLATLQQSPL VQSVNALVLSHDVIDETGKPTSMETQSTVTARDDEVLILCPEGETHV Q6HAC8 Afp12 Serratia entomophila 0.10690559399999999 1 Escherichia coli LEVO MSKENALFPAVKDAIVFDALWQQAHEKVTALSGEIWTDTGDHDPGVTLLQSATWNCSDLSYRASLSLNDLLTHQDQSTLF PEEFGPEQVLTCNTVTAEDYRRALLDVHSSDIQALDTPEQDFLFSDVSLTQEPKEHRFHWWYNAEKREYSFRKPTDSGEV NELKLRGNLWLSLVPTRYTQSLSPENLAAVEQCLAEFLAAHRNLGEVVSRITWLQPATFSPRMTIELADNIGDINQVAAQ IYQVTDAFLRPAVARYTTEQRRALGDADDAIFEGPRLKHGWQQTAPSQITSGGYVLNLGPLVNLLLAIPGVASLSTLSVD KGDGHITAVTGDNLRWQVADGYYPLLWGAPPLSLLAGDDSPLTLVSKGGIRNTLESEAMAGYLTQADLIVTTPTVLPAGR FRDQTLYIPIGQRQPECYALQQPDTVIDDQTRAVHQFLLPVDQLLADGTAELAQLPTLLAFKNRGDAIRGTRWPYTNAMV QQAIHQPYAKTLEAIAQQDAAIFTQDKQPVGGNYARELDFLQYLLGYFGTQRAALPLTLDLPDFLATQRAYLAQQPALGY DRINIRIDQVSALQKRIAARIGLDSICFADNPDLGQLPFYLIEHRQLLPQTPDSTFDSEQTPSGFAVAEPDITLTQAGSV GKVVQGQLIDLIAIEGGSRLHVSRLLVIKAEGDSFTVSTENSQQLHNTLSRLETAWASHNLRWQNSNVWLQDMDYRLNYA EAKLQPANPQQRLLASNAQSPYPAMVSVGDGIVLRPAGLQFYMPGANATRAATLDADWQLAATVKAVDPIAGTLLIEKAA GSTEDFPSAESSFRYQWAFSQANYATTDRFSFVVSAVLNRRLIENPNIVPEQLVAWIQETIMAEFPAHVSLINHWLDDAT FNNFGVTYSRWQNSGMPLGDDAFALMQILTLGHLPVTQLDIGLMRIATEEQRTEVIGDGSQWHEDVILREELFYVPKDVQ TTL Q6HAC7 singleParticle particle 7.0 ETHANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 GATAN K2 SUMMIT (4k x 4k) 20.0 1 C6 BACK PROJECTION 3.1 FSC 0.143 CUT-OFF 46991 PROJECTION MATCHING PROJECTION MATCHING emd_4782.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 -180 -180 -180 360 360 360 486.0 486.0 486.0 90.0 90.0 90.0 X Y Z -0.36811557 0.52417195 0.0010271558 0.016190868 1.35 1.35 1.35 0.1 AUTHOR Cryo-EM structure of the anti-feeding prophage (AFP) baseplate, 6-fold symmetrised emd_4782_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 0 0 0 360 360 360 486.0 486.0 486.0 90.0 90.0 90.0 X Y Z -0.033805925 0.08355964 -0.00014022538 0.0043889983 1.35 1.35 1.35 AUTHOR None emd_4782_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 0 0 0 360 360 360 486.0 486.0 486.0 90.0 90.0 90.0 X Y Z -0.035274837 0.09080495 -0.00013959323 0.0043907533 1.35 1.35 1.35 AUTHOR None