2020-11-25 REL PDBe PDBe PDBe 2019-04-01 2019-06-05 2019-06-05 2020-11-25 Wellcome Trust 200523/Z/16/Z United Kingdom Cryo-EM structure of the Human BRISC-SHMT2 complex, C2 reconstruction Walden M Tian L Hesketh E Ranson NA Greenberg RA Zeqiraj E Walden M Tian L Ross RL Sykora UM Byrne DP Hesketh EL Masandi SK Cassel J George R Ault JR El Oualid F Pawlowski K Salvino JM Eyers PA Ranson NA Del Galdo F Greenberg RA Zeqiraj E Metabolic control of BRISC-SHMT2 assembly regulates immune signalling. Nature UK 570 194 199 2019 31142841 doi:10.1038/s41586-019-1232-1 1476-4687 0006 NATUAS EMD-4759 other EM volume
Same complex with more particles reconstructed in C1
 EMD-4760 associated EM volume BRISC-SHMT2 BRISC-SHMT2 0 1 2 3 4 5 Homo sapiens 388.47 BRCC36 Homo sapiens Spodoptera frugiperda LEVO MAVQVVQAVQAVHLESDAFLVCLNHALSTEKEEVMGLCIGELNDDTRSDSKFAYTGTEMRTVAEKVDAVRIVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAELTGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQAQKSSESLHGPRDFWSSSQHISIEGQKEEERYERIEIPIHIVPHVTIGKVCLESAVELPKILCQEEQDAYRRIHSLTHLDSVTKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLQELQQEKEELMQELSSLE 3.4.19.- ABRAXAS2 Homo sapiens Spodoptera frugiperda LEVO MAASISGYTFSAVCFHSANSNADHEGFLLGEVRQEETFSISDSQISNTEFLQVIEIHNHQPCSKLFSFYDYASKVNEESLDRILKDRRKKVIGWYRFRRNTQQQMSYREQVLHKQLTRILGVPDLVFLLFSFISTANNSTHALEYVLFRPNRRYNQRISLAIPNLGNTSQQEYKVSSVPNTSQSYAKVIKEHGTDFFDKDGVMKDIRAIYQVYNALQEKVQAVCADVEKSERVVESCQAEVNKLRRQITQRKNEKEQERRLQQAVLS BRCC45 (BRE) Homo sapiens Spodoptera frugiperda LEVO GAMSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHIPYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKELVQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAFPGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLLLMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAKRAKAYFKTFVPQFQEAAFANGKL MERIT40 (BABAM1) Homo sapiens Spodoptera frugiperda LEVO SWQVPPPAPEVQIRTPRVNCPEKVIICLDLSEEMSLPKLESFNGSKTNALNVSQKMIEMFVRTKHKIDKSHEFALVVVNDDTAWLSGLTSDPRELCSCLYDLETASCSTFNLEGLFSLIQQKTELPVTENVQTIPPPYVVRTILVYSRPPCQPQFSLTEPMKKMFQCPYFFFDVVYIHNGTEEKEEEMSWKDMFAFMGSLDTKGTSYKYEVALAGPALELHNCMAKLLAHPLQRPCQSHASYSLLEEEDEAIEVEATV SHMT2 Homo sapiens Escherichia coli LEVO GSGQLVRMAIRAQHSNAAQTQTGEANRGWTGQESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGTRSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKSKTAKLQDFKSFLLKDSETSQRLANLRQRVEQFARAFPMPGFDEH 2.1.2.1 singleParticle particle 0.051 7.5 25.0 HEPES 150.0 NaCl 1.0 TCEP Quantifoil R1.2/1.3 COPPER ETHANE 95 277
Specimen contained BRCC36, ABRAXAS2, BRCC45, MERIT40 and SHMT2 macromolecules
 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 70.0 2.7 -3.1 -1.6 75000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN FEI FALCON III (4k x 4k) INTEGRATING 3 7494 2.0 1.2 1 RELION
Model generated in RELION using SGD from particles from 2D classification.
 C2 4.2 FSC 0.143 CUT-OFF RELION 64403 MAXIMUM LIKELIHOOD RELION MAXIMUM LIKELIHOOD RELION 4 RELION emd_4760.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 350 350 350 0 0 0 350 350 350 372.78497 372.78497 372.78497 90.0 90.0 90.0 X Y Z -0.18069613 0.41042942 -0.00010889793 0.008392092 1.0651 1.0651 1.0651 0.05 AUTHOR C2 reconstruction. Filtered by local resolution in RELION. 5CW3 6DK3 RIGID BODY FIT emd_4760_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 350 350 350 0 0 0 350 350 350 372.78497 372.78497 372.78497 90.0 90.0 90.0 X Y Z -0.028539881 0.10205602 -0.00002137117 0.0038932327 1.0651 1.0651 1.0651 AUTHOR C2 refinement half map 1. emd_4760_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 350 350 350 0 0 0 350 350 350 372.78497 372.78497 372.78497 90.0 90.0 90.0 X Y Z -0.03130028 0.0982079 -0.00002656934 0.0039164787 1.0651 1.0651 1.0651 AUTHOR C2 refinement half map 2.