Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

2025-08-13 REL RCSB INITIAL_RELEASE REPOSITORY DATABASE_REFERENCES citation citation_author em_admin _citation.country _citation.journal_abbrev _citation.journal_id_CSD _citation.journal_id_ISSN _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _citation.year _citation_author.identifier_ORCID _em_admin.last_update DATABASE_REFERENCES citation citation_author em_admin _citation.journal_volume _citation.page_first _citation.page_last _citation_author.identifier_ORCID _em_admin.last_update RCSB RCSB 2024-10-30 2024-11-20 2024-11-20 2025-08-13 National Science Foundation (NSF, United States) CHE-2002182 United States Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri Nissley AJ Cate JHD Ribosome, Translation, Hibernation, RNA Nissley AJ Shulgina Y Kivimae RW Downing BE Penev PI Banfield JF Nayak DD Cate JHD Structure of an archaeal ribosome reveals a divergent active site and hibernation factor. Nat Microbiol UK 10 1940 1953 2025 40676158 doi:10.1038/s41564-025-02065-w 2058-5276 9e6q FULLOVERLAP EMDB EMD-47578 associated EM volume

50S ribosomal subunit 50S ribosomal subunit 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 Pyrobaculum calidifontis JCM 11548 23S rRNA Pyrobaculum calidifontis JCM 11548 0.984007875 1 UAGGCAAAGCCGCCCGGUGGAUGGCUCGGCUCGGGCG(5MC)CGAAGAAGGGCGUGGCAAGCUGCGAUAAGCCCGGGGUA GC(B8T)GCAGGCAGGCUUAGAACCCGGGAUCCCCGAAUGGGGCUUCCUGCCGGGGCCGAAUAGGCCCCGGCGCCCCGUA AGGGGCGGGAACGCGGGGAAAGGAAACAUCUUAGUACCCGCAGGAAGGGAAGCCAACAGGGACCCCCUGAGUAGGGGCGA CCGAAAGGGGGAUAGCCCAAACCAAAUCCUCGCGGGACAACCGUGGGGAGAUGUGGGGCUUGGGCCCGGGCAACCGCCGG CGGGCGGUAGCCGAAGUGGGCUGGAAUGCCCCGCCGUAGAGGGUGAUAGCCCCGUAGGCGAAACCGCCCGUGGCGGAGUC CCGGGGUCCCGGAGUACCUCGGCUUAGUUUUGCCGGGGGAACGCGCCGGCCACUGGCCGGCAAGGCUAAGCACGUCCCGA GUCCGAUAGCGCACUAGUA(OMC)(OMC)GUGAGGGAAAGCUGAAAAGAACCCCGGAAGGGGGGUGAAAAGAGCCUGAAA CCGGGCGGCUACAGUGGGGCAGGCCCGAAAGGAUGCCCCCUCCCGAAGGAAACCCCGGUGACGGGGGAGUACGAGGGAGG GGGUCCAGGGUCUGCCCUUACGUCUAGAAACACGGGCCGGGGAGUUCA(OMC)GGCCGUGGCGAGCCUAAGGGGUUCAAC CCCGGAGGCGUAGGGAAACCGACAGCCCGCAGCGGGGCAACCCGCGAGGGGCGGGGUCUUAAAGGGCCCGUAGUCACGGC CGUGAGACCAGAAACCGGGCGAUCUAGCCCUGGGCAGGGUGAAGCGGGGCGAAAGCCCCGUGGAGGCCCGAAGGGGUUCU GAUGUGCAAAU(OMC)GU(OMU)CCCAUGACCUGGGGCUAGGGGCAAAA(OMG)ACCAA(OMU)CAAGCCCGGUGAUAGC UGGUUCCCCCCGAAGCGGGUCUCAGCCCGGCCUCCCCGGAGGCGGCCGGCGGGGUAGAGUACUGAUCGGGGGUGCGGGAG CCGAAAGGCUCCGGCCCCCGGUCAAACUCCGAACCUGCCAGCGCCGUAGAAGGGGGGAGGCGGGGGCGGUGGGGUAAGCC UCCGCUCCGAGACGGGAACAACCGAGACCGGGGUUAAGGCCCCCAAGUGCGGGCUUAGUGUCAAUCUAAAAGGGCGUCCC CCGCCCAAGACAGCGGGGCCGUGGGCCUAACAGCAGCCAUCGGCUAAGCAACGCGUAACAGCGGACCCGCCGAGGCGGGG GGCCCCGAAGAUGUACAGGGACUAAGCCCGCCGCCGAGACCCCGGCCCGCGGGCCGUUGGCCCGCGUGGGGUAGGGGGGC GCGGCCGUGGGGCAGAAGCCGGGCCGUGAGGUCCGGUGGACCCGCGGCCGACGAAGAUCCCGGCGGUAGUAGCAGCGAAG AGGGGUGAGAAGCCCCUCCGCCGGAAAGGACCAGGGUUUCCUGGCAACUUCAAUAGGCCAGGAGUUAGCCGGUCCUAAGG CGGGGCCUAAUAGGCACCCGCCGAAAGGGAAACGGGUUAAUAUUCCCGUGCCGCGGGGGUAGGUUCUGCGGCAACGCAGG CCCCGUCCCCGACGCCUCGGGAUAGGGCGGGCGGGACUGCCGUCCCGCUUAACCGUCGAAGGCCGGGGAGUGCCGUAAUG GCGAGAACCGGCCGAAGGCGGGAAUAGCCGGGGGUUUCCCCGGUCCGCCCGACUCCUGGGGCCCGUGAAAAGGGGACGGG GAACGAGCCCCCGCGCCCGUACCGAGAACCGACGCAGGUGCUCCUGGGUGAGAAGCCCAAGGCGGCUCGGGUGACCCCGG GCCAGGGAACU(OMC)GGCAAAUUGGCCCCGUAACUUCGGGAGAAGGGGUGCCUGCGGUCUUGGGGUAUACCCCCGGGAC CGCAGGUCGCAGUGGCAAGGGGGACCUGAC(PSU)GUUUAACAAAAACAUAGGUCCCCGCGAGCCCGUAA(OMG)G (OMG)UGUGUAC(OMG)GGGGCUGAAUCCU(OMG)GCCA(OMC)UGGCGGUACG(PSU)GA(A2M)CCCCGGGUACAACC GGGCGA(A2M)GCGC(4AC)(OMG)(OMC)UGAAGGCCGGGGGUAACUCUGACCC(PSU)CUUAAGGUAGC(5MC)AA (A2M)UGCCUU(OMG)CCGG(OMG)UAAGU(OMU)CCGGCGUGCA(OMU)GAAUGGAUCAACGA(OMG)(OMG)UCCCCA CUGU(OMC)(OMC)CGGCCCGGGGCCCGGCGAACCCACCU(OMC)CAGGUGCACAG(OMU)CCUGGGACCCCCGACGGGG C(OMG)AGAAGUCCCUAUGGAGCUUCACAGCAGCCUGUCGUUGCGGGGGGGCGGGGGGUGCAGAGCGUAGGUGGGAGCGA UGAAACGGGGUCUCCGGGCCCCGUGGAUGCGACCCUGGAACACCACCCACUCUCCGCCCCUCCGCUUACCCGCCGCAAGG CGGGGACAGCGGCAGGCGGGCUGUUCGGCUG(OMG)GGC(OMG)GCACACCCCUGAAAAGAUAUC(OMG)GGGGUGCCCA AAGCUCGGC(OMU)CAGGCGGGUCAGAAAUCCGCCGUAGAGUGUAAGGGCAAAAGCCGGGCUGACUGGGCCCUUGAACGC AAGGGGCCCAGGCGGGAAACCGGGGCCUAGAGAACGCUCGUGCCCCCACCAGUGGGGGCCGG(OMG)(OMC)AUGACAGA AAAGUUAC(OMC)CUAGGAAUAACCGGC(PSU)CG(OMU)CGCGGGUGAGAGUCCCCAUCGACCCC(OMG)CGGUU (PSU)(OMG)G(PSU)ACCCAGACGUCG(OMU)(OMC)(PSU)CU(OMU)CCCAUCCUGGCGGUGCAGCAGCCGCCAAGG GUGGGGC(OMU)(OMG)CCCGCCCAUUAAAGGGGAACGUG(A2M)GAUGGG(UR3)UCAGA(OMC)CG(OMU)CGCGAGA CAGGU(OMC)GGUCUCUACCUGUCGGGGGCGCUGGCCGCCUGAGGGGAAGGUGCCCUCAGUACGAGAGGAACGGGGCGCC GCGGCCUCUAGUGUACCGGUUGUCCGGCAGGGCACUGCCGGGCAGCCACGCCGUGGGGGA(OMU)AACCGCUGAAAGCAU CUAAGCGGGAAGCCCUC(OMC)(OMC)CGAGACGAGGCGGCCGUUGCCCUGGGGGCAACCCCGGGGCACGAGGGCUCC (B8T)GUAGAAGACGGGGUUGAUGGGGGGGCGGUGUAACCCCCGAGGGUUUCCCGAGGGGAGAGCCGGCCCCUCCCAAUC GCCCGAGCGU(G7M)C 5S rRNA Pyrobaculum calidifontis JCM 11548 0.041803953 1 GCCCCUAACCCGGCCAUAGGCGCCGGUGCUACACCCGGUCUCAUCAGAACCCGGAAGUUAAGGCCGGCGCCGCGCUCGGG AGUACUGGGCUCCGCGAGGGCCCGGGAAACCGGCGUGCUGGGAGGGGGC CP000561.1 Putative signal-transduction protein with CBS domains Pyrobaculum calidifontis JCM 11548 0.072127695 1 LEVO MLTREELEKLAEKRVPQFVRDVVEHPPFRVTVNTTLETLAAYLRKFPVDVVPVFKSVFSDEVAGVVYPHTALLLKSKKLD AKVGEFLNQPLVVKESWRIENVAEMLISESKWGAVVVDEEGKFVGVVSLRGLLSALLLREPKAKSVAAVYTSIDEKKPRV GFVKAIEKVSKIFHKLVGGEVDGYVVLNREGGAAGILTVWNFLKSRRWFRGSGEPRAIFGTRVTRGESKPRGVARVWRIM SRGVAVANPDTPITDVARYMATFGIYVVPVVDRNGKVIGAVTAWDVLHAYLYGPKEGREDVEVKTAVEVPVSKPSMEAVI RLKPVKHVTGLRARDVMLSDVPMVNVRDPLSSIRKAFLRSKSGILAVVDDSGKVVGFITRRDFMSYIAEKSLGYWRRQKG KLLVLREEALPGEQAKLAVEEGTAGDLAKSEYPTVSESATLEEVAYKMLAAGTDYVVVIDSAGQPIGVVTKDELVKAYKE RGRSVKVGELMTPADVAAVNPFSSLMSTTRKINAFELDGVVVVEGGNIMGVVTVDDLALRPVEETLRGERVVYFTKSGVL RKATTGLSRLRYSKVGTLTALDVSRPVDHVANVNADVKEVLDKLVEQGVVPVVDEQGRLVGVLNKMDIVKDLARVYVTYA MPEKLAEVKQVEERA A3MX58 Large ribosomal subunit protein uL2 Pyrobaculum calidifontis JCM 11548 0.026240348 1 LEVO MGKRILVQRRGRGGSQFRSPSWKRDGPVRYPPNISGRGIVVEILHEPGLNAPVAKIRMENGVEFFNYAAEGLYVGQVIQV GPDAPPAVGNVLPLGKIPEGTMVFNVEKRFGDGGKFARSGGTYALVIGQRPEENKTIVRLPSGRVIEVDARGRATIGIVA GGGRVEKPFVKAGKKYHRARAKSWKYPTVRGKAMSPYAHPHGGGSHQKGGTPVPKTAPPGQKVGFIGSRCTGRGCVRARA QQKQ A3MS41 Large ribosomal subunit protein uL3 Pyrobaculum calidifontis JCM 11548 0.037240542999999994 1 LEVO MGLKINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPTLLGFAAYKAGMLHAVVVDDRPTSPLYGKEVVKAVTVLDAP PLYVAAVRLYTLDPTNGYKVAVGEAWVSEPPADLRRVLTLPEKFDTEKQLKALEEYRDVAVDVRVLVATQPRLSGIGKKT PEVLEIPVGGVPSIDERINFAISLLGKTVSPKDVFTPGQLVDVIAVTKGKGYQGVVKRFGVTILPRWHKHRKGHRRTGTI GPQAPALMFTQPRPGQMGFHQRTEYNKRILKIGDNGAEITPKSGFPHYGVIKGPYILLQGSVPGARKRLVVLRYPVRPPK KAPPAAEPQVVWVSSQSI A3MWI4 Large ribosomal subunit protein uL4 Pyrobaculum calidifontis JCM 11548 0.031602059 1 LEVO MGAVVKELLKFKLLDLSPYIKPAEERPPEALKVYDVNGQYMADIETPIHFYEPVRPDLIRRAYLSALSARFQPKGVYEGA GKEHSCESFGVGLGIARIPRYKGHLWPRGCFAPNTRGGRRAHPPRPEKKLHEEINWKEKNLAIRSAIAATAYKSWVAARG HMVEKVPSLPLVVSGDAEKIAKAKEAKKLFEVLGLWPDVERAAEGVKIRAGKGKMRGRRYKEPKSVLVVVSELDVPLIGA VRNFPGVDVVPVSHLNMLVLAPGGVPGRLTLWTATAVERLKGLFL A3MWI5 Large ribosomal subunit protein uL5 Pyrobaculum calidifontis JCM 11548 0.020156907999999998 1 LEVO MKWKELVLVKDHPMKRVYIEKVVVNIGVGTGGERLEKAANLLRELTGAEPSLRRAKRSIKDFGIRKGEPIGVAVTLRRDK AVEFLMRALQAVGNRIKRSSFDERGNVCFGIKEHIMLPGVKYDPAVGIWGMDVCVRLAKPGLRVQLRRRRRSKVGKGQLV TREEAVEFFQKVLGVQVD A3MXP8 Large ribosomal subunit protein uL6 Pyrobaculum calidifontis JCM 11548 0.021663471 1 LEVO MHVVYAVEEVPIPDGVKVAIEKTGPFDYVVKVKGPLGELVKEFKNTPVIMSLSDGKVVLEVLNAKKREYALLGTYKGILK NMFLGVTKGWRYKLKVIYTHFPMLVKVQGNQLTIENFLGRKSKIVLEIPKGVKVEVKGKEDIVVEGIDRELVSQFAAAIQ AATELRGEEKPSPHGREGGLGVVDGIYVVGYEHVKA A3MWV5 Large ribosomal subunit protein eL8 Pyrobaculum calidifontis JCM 11548 0.016013694999999998 1 LEVO MAVTIDPKTFYANPLPGKPFYVRFEVPSDVAEKALEILSIARQTGKIKKGTNETTKAVERGLAKLVLIAEDVDPPEVVAH LPLLCEEKKVPYVYVPSKEKLGKAAGINVAAAAAVVIEAGQAAGELEALVNKINEIRAKHGLNAIPVRR A3MTA9 Large ribosomal subunit protein uL13 Pyrobaculum calidifontis JCM 11548 0.021736995999999998 1 LEVO MIVKKVLDLSQIPEKGEIVIDAEGHIMGRLASYVAKILLSKPELRVVVVNAEKLVVTGDRKMVVEWFMRKISEWRTHYNP EKAGPKIPRRPDRVFKRVVRGMLPKKVESGRDALKRLRVYMSIPLDFIQRRRLVLYEVPAAKLRVRPLMQFVTLEEVWRS IDPAAWEKWNKAKEVWAKKIKQATSG A3MXZ7 Large ribosomal subunit protein eL13 Pyrobaculum calidifontis JCM 11548 0.017939125 1 LEVO MIPKPVVQVPRSIKSGGVTKWKEGRGFSLGELKEVGLNAEQARLLGLPVDTRRDSVWPQNVEALRKWLIEVLEGKATPPE PTLPKVVKVKRKRGRAFRGLTSAGRRSRGLISTRFRETHNYKFKKKAKERRLKKRHEATKGLGNVLRISRIINESKE A3MTP8 Large ribosomal subunit protein uL14 Pyrobaculum calidifontis JCM 11548 0.015768449 1 LEVO MAKRGGKRTVGVPYRFHVTPGIFMNSLVPVADNSGAKLVRVIGVVGHYSKSVHRRIPGAGVGDMVVVVVREGKPELRKQI FRAIVVRQRRPYRRPDGTWVAFEDNAVVIVTPEGDPKGSEIHGPVAMEATLRWPTIANLASIVV A3MX34 eL14 Pyrobaculum calidifontis JCM 11548 0.011470541999999999 2 LEVO MVKVIDVGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKSLSGVRRRRVNINHIEPTDKKIEIKKGASDEEVLKALEAA GLVEYMKERVKPKLFEITPADVK Large ribosomal subunit protein uL15 Pyrobaculum calidifontis JCM 11548 0.017525429999999998 1 LEVO MVRRFKRATKYRRGSRTHGWGRVGQHRKSGGSGGKGMVGFHKHKWSLVMKYGESGTGWPFYGKHGFKQPETISVEWRPIN VGRLAELVKELRERGEVREEEGRLVVDLLKLGYNKLLGGGHMDVPLVVYTPVASKAAVEKIAKAGGEVRIVSLVHR A3MUZ1 50S ribosomal protein L15e Pyrobaculum calidifontis JCM 11548 0.022623768 1 LEVO MPSAYQYMAMWYRKVGREVHERLMRSVLIKWRKEPAIVRVERPFRLERARKLGYKPKQGVVVARVRLIRGPFNRRRPDSG RRPKRMGVYGITAWKSWRQVAEERAARKFPGLEVLNSYWVADDGIYRYFEVILIDCNQPTIQRDPLYSGICGREVPRRRL ARRLRERQRKLIEHLKKTLLPKLKGTSTA A3MWR6 Large ribosomal subunit protein uL16 Pyrobaculum calidifontis JCM 11548 0.019893229999999998 1 LEVO MPARPARCYRRIKGPPYTREEYIHGAPMIQIPKFDMGTTSAAARAAFTMVAKLVAEERGQIRMQALEAARQISSKYLTKY VGDANYYLRLNVVPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEPGQVIFYVEFKPEHLAHVKEALRRAASKL PIPTRIVVEPKGDGKTAS A3MXP3 Large ribosomal subunit protein uL18 Pyrobaculum calidifontis JCM 11548 0.023424332 1 LEVO MARGARYKVPFRRRREGVTNYRKRRKLLLSRKPRLVVRKTNKHLIAQIVIARPHGDETVVGLDTRVLSKFGWKGDENNTS AAYLLGLIVGYKARAKGIKEAILDIGLHRPTPGARVFAVMKGVIDAGVEVPHGEEVVPSEERIRGEHVAEYAKRLKEEAP EAYKARFSRYLQRGLPPEELPSHFEEVKKKIVEYYEQKLAKAVAR A3MSJ3 Large ribosomal subunit protein eL18 Pyrobaculum calidifontis JCM 11548 0.013224722999999999 1 LEVO MPPNPTGPTNRQLRMLIRFLRKAATANSANIWRAIAELVERPRRSRVVVNVGKLNRVANDGDVVVIPGKLLGGGELKKRV VVAAVSVTPKAWKKVVEAGGEVLTIPELVRRNPKGSGVKIVI A3MXZ6 Large ribosomal subunit protein eL19 Pyrobaculum calidifontis JCM 11548 0.017414342 1 LEVO MVDVKRLAAEILGVGVSRVKISPEAVGRLEEVVTKDDVRALIDEGLIWAEPEKGNSRGRWRELHEKKKKGRRRGQGSRKG RRLDEEEAWVNKMRVMRRFLNTLKRQGKLDPATWRQLYRMVKGNYFRDLRHLKTYINEHKLTKEPVK A3MSJ4 Large ribosomal subunit protein eL20 Pyrobaculum calidifontis JCM 11548 0.008929547 1 LEVO MPKIYRVVGDTSTGMKFVVEVVGERPYDALEKVYSVLGSRHKLKRTQIRIREVSVVEPSSAKSNEAKMLMVLEKVVRY A3MX77 Large ribosomal subunit protein eL21 Pyrobaculum calidifontis JCM 11548 0.011319300999999999 1 LEVO MVKRTHGYRYKSRKLLSKAPRERGMSGLSRLLYEYKPGDKVVIDIDPTFISTAPHRRYQGKVGVVIGTRGRAYVIETYIG DKKKIIITTPEHLRPHLGG A3MWX9 Large ribosomal subunit protein uL22 Pyrobaculum calidifontis JCM 11548 0.021309219 1 LEVO MPHFHYSLTDEQAAELVFKKYGVRITPEQIAKAYAPEQRMSWKKSVEVARFIKGMTLKQAKAWLEDVVKLKRPIPIKTFK KKQAHHATPWEGWPVAKWPVKVAKRYLQLLENLENNAKFKGLDVERLVIIHAAAHKGIKIPNIMPRAFGRATPFNEETVN VEIVAAELPKEVVPKRYKLNLVKR A3MTL6 Large ribosomal subunit protein uL23 Pyrobaculum calidifontis JCM 11548 0.009307084999999998 1 LEVO MIKRFVITEKALRLAERENKITIIVERTATKKQIADEVQRLYNVKVEKVNTLITPRGEKKAYVKLAEGYSAMDLLTKLGV L A3MWI6 Large ribosomal subunit protein uL24 Pyrobaculum calidifontis JCM 11548 0.014588311999999999 1 LEVO MPFTASAQPRKQRLSLYAAPLHLRRKLLNAKLSPELQKKLGVKRLPVRRGDTVLIMRGDFKGVTGKVVKVDLKRVRIFVE GATRTNSRGQTVYYPIHPSKVMIVDVDLSDKARQKLIERRKRGQHGSS A3MWZ8 Large ribosomal subunit protein eL24 Pyrobaculum calidifontis JCM 11548 0.00710254 1 LEVO MKIHKCSFCGADIPPGYGIMYVRSDGTVQRFCSRKCFVSAVKYGRNPRKLAWVRKKKAKTSK A3MTA8 Large ribosomal subunit protein uL29 Pyrobaculum calidifontis JCM 11548 0.009158870000000001 1 LEVO MSERKLKPKALREMSPEERRELLNQLRAELVKLQTQRSRGFVEKPGRIRQVRRMIARILTIERELAKAGARAEKGGAKA A3MTL2 Large ribosomal subunit protein uL30 Pyrobaculum calidifontis JCM 11548 0.020287805 1 LEVO MMAATEQKTVYPRYAVIRLRGIPTTPGDIAATLDLLRLRRKFTMVVVVGSPSVMGMIERVNDWVTWGEIDADTLAEVLRK RGRIVGDKPLTLEYLQKWGWNSFEEVALAYISGEIETLACKKDFKAREGQRPPCIPYLKPFFRLHPPRGGLNSVKLHFSV GGDLGYRGPLINDLIKRML A3MU87 Large ribosomal subunit protein eL30 Pyrobaculum calidifontis JCM 11548 0.010886838999999999 1 LEVO MIDIGRELQVAINTGKVIIGLRETKKSLLTGAPKLVIIAANAPRWAREDIEYYAKLAGVPIFTFPGSSIELGAAAKRPHK IMALAVVDPGQSEILKLVEHA A3MXZ2 Large ribosomal subunit protein eL31 Pyrobaculum calidifontis JCM 11548 0.010668631999999999 1 LEVO MSEEKKVVLTREYVINLRRTREVSRTKRAKYAVGLIRRFVARHLKVEPKAVKLGQALNEALWARSIEKPPRRVHVVVEKL DDGTVRVELKQ A3MX75 Large ribosomal subunit protein eL32 Pyrobaculum calidifontis JCM 11548 0.018172571999999998 1 LEVO MVVVPRRELPQPLKRLLRLRLQMKRRKPEFVRIDQWRYKRIEDSGWRNQRTLDNKIRRKWKGWPKPVEVGYRKPAAVRGL HPSGFVEVLVHRPEDLAGLDPKVHAVRIGRTVGLRKRLEIVKKARELGFYVLNPGKEVVELLKKELNTAQPQQ A3MSJ5 Large ribosomal subunit protein eL34 Pyrobaculum calidifontis JCM 11548 0.009373127 1 LEVO MPRPAYRSRSLRRVKVKTPGGRTVVHYEKRAKGVPKCAVTGQPLGGMNSKVYRFGISTRAPSRPYGGVVSHKVLARAIRY AVRR A3MV68 Large ribosomal subunit protein eL37 Pyrobaculum calidifontis JCM 11548 0.006174278 1 LEVO MKGTPSMGKHNKGKTHIRCPRCGRHSYNVTKKYCASCGWGRSKRWRRYNWAK A3MY38 LSU ribosomal protein L38E Pyrobaculum calidifontis JCM 11548 0.007954435 1 LEVO MPKEIFLVELWKKYGEKAQVVRVKRYEDFVKLKARLSGYLYTIRVPPDKAEQLISELKAKNVKVEEV A3MTT1 Large ribosomal subunit protein eL39 Pyrobaculum calidifontis JCM 11548 0.006030298 1 LEVO MARNKPLGKKLRLAAALNSNRNPPLWVIAKTKRRVTRSPARRHWRRQKLKA A3MUU4 Large ribosomal subunit protein eL40 Pyrobaculum calidifontis JCM 11548 0.006356657 1 LEVO MPITLDPEKLAIVLQHRFNYKICRNCGARNPPDAEKCRRCRSRNLRPKKFKKK A3MX99 eL42 Pyrobaculum calidifontis JCM 11548 0.01060361 1 LEVO MKFPKSVNMYCPRCNTYTQHSVSNYHGGQRRSLAEGQRRYERKLKGYGSTPKPKQKRFAKVNKKVTLVFTCTKCGYKIVK SLGRMKKVELV Large ribosomal subunit protein eL43 Pyrobaculum calidifontis JCM 11548 0.011387464 1 LEVO MPFSHTKIVGPAGRYGARYGMGIRRKVTTIEVKQRGKHRCPSCRSLVRLERLAFGIWHCPKCGHTFAGGAYVPQTILGKT IAPEELKGVEAEKAKWKEAAKR A3MUM7 DJ-1/PfpI domain-containing protein Pyrobaculum calidifontis JCM 11548 0.020956449 1 LEVO MPKALLYVIDTAKRDEYPTLKNFLVKGGYEVDVAVGSRDVNVNYTVDLMTLPSDKLPTLFEEYDAFALAGGFKIYYHVLQ KKPPLKIWDLNIDKERLAQLVVEFNRRRKLLIAPMAVPAYVAQLGLLSGRHATVYPVTELIKILRDNKVNFVNKQVVRSE NIITVKDITTTSEKEFLAALREKG A3MTM7 PaREP1 domain containing protein Pyrobaculum calidifontis JCM 11548 0.010938797 1 LEVO MPLCSKWESLITWAEKGGNSYKALEFREKLVECIVYTATEKVKKKKLDEAEELLKYGKEVAKKFNIEELNFHIALLEKEI SKIRQRRAQAQTK A3MWU0 SPERMINE 0.00020234 46 SPM MAGNESIUM ION 2.4305e-05 173 MG ZINC ION 6.5409e-05 5 ZN water 1.8015e-05 7994 HOH singleParticle particle 0.12 7.0 20.0 C8H18N2O4S HEPES 10.0 KCl Potassium Chloride 20.0 Mg(CH3COO)2 Magnesium Acetate 3.0 C10H26N4 Spermine 2.0 C4H10O2S2 DTT UltrAuFoil GOLD 300 CARBON CONTINUOUS GLOW DISCHARGE ETHANE 100 277.15 FEI VITROBOT MARK IV TFS KRIOS OTHER BRIGHT FIELD FIELD EMISSION GUN 300 0.5 1.5 105000.0 GATAN K3 (6k x 4k) 1 7318 40.0 1 2360632 PHASE FLIPPING AND AMPLITUDE CORRECTION 1.95 FSC 0.143 CUT-OFF 183467 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_47578.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 608 608 608 0 0 0 608 608 608 504.2144 504.2144 504.2144 90.0 90.0 90.0 X Y Z -0.5178891 1.3523083 -0.00023832911 0.03154009 0.8293 0.8293 0.8293 0.152 AUTHOR ::::EMDATABANK.org::::EMD-47578:::: Pyrobaculum caldidifontis 50S ribosomal subunit bound to Dri AB INITIO MODEL emd_47578_msk_1.map emd_47578_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 608 608 608 0 0 0 608 608 608 504.2144 504.2144 504.2144 90.0 90.0 90.0 X Y Z -0.423696 0.6856517 0.00015655566 0.04214748 0.8293 0.8293 0.8293 AUTHOR ::::EMDATABANK.org::::EMD-47578:::: Pyrobaculum caldidifontis 50S ribosomal subunit bound to Dri (Half Map) emd_47578_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 608 608 608 0 0 0 608 608 608 504.2144 504.2144 504.2144 90.0 90.0 90.0 X Y Z -0.4249264 0.7055152 0.00015738558 0.042559598 0.8293 0.8293 0.8293 AUTHOR ::::EMDATABANK.org::::EMD-47578:::: Pyrobaculum caldidifontis 50S ribosomal subunit bound to Dri (Half Map)