2025-07-30 REL RCSB INITIAL_RELEASE REPOSITORY RCSB RCSB 2024-10-18 2025-07-30 2025-07-30 2025-07-30 French National Research Agency ANR-10-INBS-0005-02 France French National Research Agency ANR-17-EURE-0003 France National Science Foundation (NSF, United States) NSF-2102705 United States National Science Foundation (NSF, United States) NSF-2400333 United States CryoEM structure of inducible Lysine decarboxylase from Hafnia alvei D-hydrazino-Lysine analog at 2.3 Angstrom resolution Duhoo Y Desfosses A Gutsche I Doukov TI Berkowitz DB L-Lysine decarboxylase, cadaverine, D-alpha-hydrazone inhibitor, LYASE Baine JM Duhoo Y Doukov T Desfosses A Bisello G Beio ML Bauer O Perduca M Bacia-Verloop M Bertoldi M Phillips RS Gutsche I Berkowitz DB alpha-Hydrazino Acids Inhibit Pyridoxal Phosphate-Dependent Decarboxylases via "Catalytically Correct" Ketoenamine Tautomers: A Special Motif for Chemical Biology and Drug Discovery? Acs Catalysis US 15 8204 8218 2025 40401103 doi:10.1021/acscatal.5c00326 2155-5435 Liebschner D Afonine PV Baker ML Bunkoczi G Chen VB Croll TI Hintze B Hung LW Jain S McCoy AJ Moriarty NW Oeffner RD Poon BK Prisant MG Read RJ Richardson JS Richardson DC Sammito MD Sobolev OV Stockwell DH Terwilliger TC Urzhumtsev AG Videau LL Williams CJ Adams PD Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix. Acta Crystallogr D Struct Biol 75 861 877 2019 31588918 doi:10.1107/S2059798319011471 2059-7983 9e0q FULLOVERLAP Inducible Lysine decarboxylase from Hafnia alvei with D-alpha-hydrazino-Lysine inhibitor Inducible Lysine decarboxylase from Hafnia alvei with D-alpha-hydrazino-Lysine inhibitor 0 1
Inducible Lysine decarboxylase from Hafnia alvei with D-alpha-hydrazino-Lysine inhibitor in ketoenamine form
Hafnia alvei ATCC 51873 Lysine decarboxylase, inducible Hafnia alvei ATCC 51873 0.080205281 10 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LEVO MNIIAILNHMGVYFKEEPIRELHKALEALDFQIVYPNDREDLLKLIDNNARLCGVIFDWDTYNLDLCEEISAMNEHLPVY AFANTHSTLDVSLNDLRLNVEFFEYALGAAQDIAQKIRQSTDAYIDEILPPLTKALFNYVKEGKYTFCTPGHMGGTAFQK SPVGSIFYDFFGANAMKSDISISVGELGSLLDHSGPHKEAEEYIARTFNAERSYMVTNGTSTANKIVGMYSAPAGSTVLI DRNCHKSLTHLMMMSDITPIYFRPTRNAYGILGGIPKSEFQHDTIAERVAQTPNATWPVHAVVTNSTYDGLLYNTDYIKE ALDVKSIHFDSAWVPYTNFSPIYKGLCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDINEETFNEAYMMHTSTS PHYGIVASTETAAAMMKGNAGKRLINGSIERAIRFRKEIKRLNSESEGWFFDVWQPEGIDEAKCWPLDSKDNWHGFKDID NDHMYLDPIKVTLLTPGMQKDGSMADTGIPASIVSKYLDEHGIIVEKTGPYNMLFLFSIGIDKTKALSLLRALTDFKRSY DLNLRVKNMLPSLYREDPEFYENMRIQELAQGIHALIQHHNLPDLMYRAFEVLPTMVMNPHAAFQMELRGQTEEVYLEEM IGKVNANMILPYPPGVPLVMPGEMLTEESRPVLEFLQMLCEIGAHYPGFETDIHGAYRQADGRYTVKVIK G9Y9L1 (2R)-6-amino-2-[(2E)-2-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)hydrazin-1-yl]hexanoic acid 0.00039032899999999997 10 A1BD0 water 1.8015e-05 727 HOH singleParticle particle 1 7.4 Quantifoil R2/1 COPPER 300 ETHANE 100 295 FEI VITROBOT MARK IV TFS GLACIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 0.8 2.2 GATAN K2 SUMMIT (4k x 4k) 40.0 1 PHASE FLIPPING AND AMPLITUDE CORRECTION
Ab initio
 D5 2.3 FSC 0.143 CUT-OFF cryoSPARC 3.1 360000 PROJECTION MATCHING PROJECTION MATCHING emd_47366.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 458.0 458.0 458.0 90.0 90.0 90.0 Z Y X -1.6729273 2.8708928 -0.0000000000001 0.052883454 1.145 1.145 1.145 0.0641 AUTHOR RESOLVE density modified map emd_47366_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 458.0 458.0 458.0 90.0 90.0 90.0 X Y Z -0.4977862 1.3569486 0.00034736784 0.043136347 1.145 1.145 1.145 AUTHOR halfB emd_47366_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 458.0 458.0 458.0 90.0 90.0 90.0 X Y Z -0.46276373 1.3834003 0.00034762672 0.0431534 1.145 1.145 1.145 AUTHOR halfA