2025-07-16 REL RCSB INITIAL_RELEASE REPOSITORY RCSB RCSB 2024-10-18 2025-07-16 2025-07-16 2025-07-16 National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) R01-AI088025 United States Nandi S Conn GL 70S ribosome, unmethylated ribosome, ribonucleoprotein complex, protein synthesis, RIBOSOME Nandi S Dey D Srinivas P Dunham CM Conn GL Nucleic Acids Res. UK 53 2025 40626557 doi:10.1093/nar/gkaf618 1362-4962 0389 NARHAD 9e0n FULLOVERLAP M. smegmatis unmethylated 70S ribosome M. smegmatis unmethylated 70S ribosome 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 Mycolicibacterium smegmatis LR222 C101A 2.3 Large ribosomal subunit protein uL30 Mycolicibacterium smegmatis LR222 C101A 0.007022146999999999 1 LEVO MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVEEVGK A0QSG7 Large ribosomal subunit protein bL31 Mycolicibacterium smegmatis LR222 C101A 0.008312485 1 LEVO MKTGIHPEYVDTTVQCGCGHSFTTRSTKQSGTIVVEVCSQCHPFYTGKQKILDSGGRVARFEKRYGKRNKAAADK A0R215 Large ribosomal subunit protein bL32 Mycolicibacterium smegmatis LR222 C101A 0.006467718999999999 1 LEVO MAVPKRRMSRANTRSRRAQWKAEAPGLVTVSVAGQQRKVPRRLLKAARLGLVDLDKR A0R3I9 Large ribosomal subunit protein bL33A Mycolicibacterium smegmatis LR222 C101A 0.006468501 1 LEVO MASSTDVRPKITLACEVCKHRNYITKKNRRNDPDRLEIKKFCPNCGTHQPHKESR A0QS39 Large ribosomal subunit protein bL34 Mycolicibacterium smegmatis LR222 C101A 0.00552258 1 LEVO MAKGKRTFQPNNRRRARVHGFRLRMRTRAGRAIVANRRSKGRRALTA A0R7K0 Large ribosomal subunit protein bL35 Mycolicibacterium smegmatis LR222 C101A 0.007298504999999999 1 LEVO MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPTKRTRRLDGRTTVSAADNSRINKLLNG A0QYU7 50S ribosomal protein L36 Mycolicibacterium smegmatis LR222 C101A 0.004341277 1 LEVO MKVNPSVKPICDKCRVIRRHGRVMVICSDPRHKQRQG A0QSL4 50S ribosomal protein bL37 Mycolicibacterium smegmatis LR222 C101A 0.0028413749999999997 1 LEVO MAKRGRKKRDRKHSKANHGKRPNA A0QTP4 23S rRNA Mycolicibacterium smegmatis LR222 C101A 1.012140938 1 UAAGUGUUUAAGGGCGCAUGGUGGAUGCCUUGGCACUGGGAGCCGAUGAAGGACGUAGGAGGCUGCGAUAAGCCUCGGGG AGCUGUCAACCGAGCGUUGAUCCGAGGAUGUCCGAAUGGGGAAACCCGGCACGAGUGAUGUCGUGUCACCAGGCGCUGAA UAUAUAGGCGUCUGGGGGGAACGCGGGGAAGUGAAACAUCUCAGUACCCGUAGGAAGAGAAAACAAAAUGUGAUUCCGUG AGUAGUGGCGAGCGAAAGCGGAGGAUGGCUAAACCGUAUGCAUGUGAUACCGGGUAGGGGUUGUGUGUGCGGGGUUGUGG GACCUAUCUUUCCGGCUCUACCUGGCUGGAGGGCAGUGAGAAAAUGUUGUGGUUAGCGGAAAUGGCUUGGGAUGGCCUGC CGUAGACGGUGAGAGCCCGGUACGUGAAAACCCGACGUCUGUCUUGAUGGUGUUCCCGAGUAGCAGCGGGCCCGUGGAAU CUGCUGUGAAUCUGCCGGGACCACCCGGUAAGCCUGAAUACUUCCCAGUGACCGAUAGCGGAUUAGUACCGUGAGGGAAU GGUGAAAAGUACCCCGGGAGGGGAGUGAAAGAGUACCUGAAACCGUGCGCUUACAAUCCGUCAGAGCCCUCGACGUGUCG UGGGGUGAUGGCGUGCCUUUUGAAGAAUGAGCCUGCGAGUCAGGGACAUGUCGCGAGGUUAACCCGGGUGGGGUAGCCGC AGCGAAAGCGAGUCUGAAUAGGGCGUAUCCACACAAGAGUGUGUGGUGUAGUGGUGUGUUCUGGACCCGAAGCGGAGUGA UCUACCCAUGGCCAGGGUGAAGCGCGGGUAAGACCGCGUGGAGGCCCGAACCCACUUAGGUUGAAGACUGAGGGGAUGAG CUGUGGGUAGGGGUGAAAGGCCAAUCAAACUCCGUGAUAGCUGGUUCUCCCCGAAAUGCAUUUAGGUGCAGCGUCGCAUG UUUCUUGCCGGAGGUAGAGCUACUGGAUGGCCGAUGGGCCCCACAGGGUUACUGACGUCAGCCAAACUCCGAAUGCCGGU AAGUCCAAGAGUGCGGCAGUGAGACGGCGGGGGAUAAGCUCCGUGCGUCGAGAGGGAAACAGCCCAGAUCGCCGGCUAAG GCCCCUAAGCGUGUGCUAAGUGGAAAAGGAUGUGCAGUCGCGAAGACAACCAGGAGGUUGGCUUAGAAGCAGCCACCCUU GAAAGAGUGCGUAAUAGCUCACUGGUCAAGUGAUUGUGCGCCGAUAAUGUAGCGGGGCUCAAGCACACCGCCGAAGCCGC GGCAGCCAACGUGUUGGCUGGGUAGGGGAGCGUCCUGCAUCCGGUGAAGCCGCCGAGUGAUCGAGUGGUGGAGGGUGUGG GAGUGAGAAUGCAGGCAUGAGUAGCGAUUAGGCAAGUGAGAACCUUGCCCGCCGAAAGACCAAGGGUUCCUGGGCCAGGC CAGUCCGCCCAGGGUGAGUCGGGACCUAAGGCGAGGCCGACAGGCGUAGUCGAUGGACAACGGGUUGAUAUUCCCGUACC CGUGUAUGUGCGUCCAUGAUGAAUCAGCGGUACUAACCAUCCAAAACCACCGUGACCGCACCUUUCGGGGUGUGGCGUUG GUGGGGCUGCAUGGGACCUUCGUUGGUAGUAGUCAAGCGAUGGGGUGACGCAGGAAGGUAGCCGUACCGGUCAGUGGUAA UACCGGGGUAAGCCUGUAGGGAGUCAGAUAGGUAAAUCCGUCUGGCAUAUAUCCUGAGAGGUGAUGCAUAGCCGAGUGAG GCGAAUUCGGUGAUCCUAUGCUGCCGAGAAAAGCCUCUAGCGAGGACAUACACGGCCCGUACCCCAAACCAACACAGGUG GUCAGGUAGAGAAUACUAAGGCGUACGAGUGAACUAUGGUUAAGGAACUCGGCAAAAUGCCCCCGUAACUUCGGGAGAAG GGGGACCCACAUGGCGUGUAAGCCUUUACGGCCCAAGCGUGAGUGGGUGGCACAAACCAGUGAGAAGCGACUGUUUACUA AAAACACAGGUCCGUGCGAAGUCGCAAGACGAUGUAUACGGACUGACGCCUGCCCGGUGCUGGAAGGUUAAGAGGACCCG UUAACUCCCUUUGGGGGUGAAGCGGAGAAUUUAAGCCCCAGUAAACGGCGGUGGUAACUAUAACCAUCCUAAGGUAGCGA AAUUCCUUGUCGGGUAAGUUCCGACCUGCACGAAUGGCGUAACGACUUCUCAACUGUCUCAACCAUAGACUCGGCGAAAU UGCACUACGAGUAAAGAUGCUCGUUACGCGCGGCAGGACGAAAAGACCCCGGGACCUUCACUACAACUUGGUAUUGGUGC UCGAUACGGUUUGUGUAGGAUAGGUGGGAGACUGUGAAGCUCACACGCCAGUGUGGGUGGAGUCGUUGUUGAAAUACCAC UCUGAUCGUAUUGGGCCUCUAACCUCGGACCGUAUAUCCGGUUCAGGGACAGUGCCUGGUGGGUAGUUUAACUGGGGCGG UUGCCUCCUAAAAUGUAACGGAGGCGCCCAAAGGUUCCCUCAACCUGGACGGCAAUCAGGUGUUGAGUGUAAGUGCACAA GGGAGCUUGACUGCGAGACGGACAUGUCGAGCAGGGACGAAAGUCGGGACUAGUGAUCCGGCACCUCUGAGUGGAAGGGG UGUCGCUCAACGGAUAAAAGGUACCCCGGGGAUAACAGGCUGAUCUUCCCCAAGAGUCCAUAUCGACGGGAUGGUUUGGC ACCUCGAUGUCGGCUCGUCGCAUCCUGGGGCUGGAGCAGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGCACGCG AGCUGGGUUUAGAACGUCGUGAGACAGUUCGGUCUCUAUCCGCCGCGCGCGUCAGAAGCUUGAGGAAACCUGUCCCUAGU ACGAGAGGACCGGGACGGACGAACCUCUGGUAUACCAGUUGUCCCACCAGGGGCACGGCUGGAUAGCCACGUUCGGACAG GAUAACCGCUGAAAGCAUCUAAGCGGGAAACCUCUUCCAAGACCAGGCUUCUCACCCUCUAGGAGGGAUAAGGCCCCCCG CAGACCACGGGAUUGAUAGACCAGACCUGGAAGCCUAGUAAUAGGUGCAGGGAACUGGCACUAACCGGCCGAAAACUUAC CP080274.1 5S rRNA Mycolicibacterium smegmatis LR222 C101A 0.038038777 1 GUUACGGCGGUCCAUAGCGGCAGGGAAACGCCCGGUCCCAUCCCGAACCCGGAAGCUAAGCCUGCCAGCGCCGAUGAUAC UACCCUUCCGGGUGGAAAAGUAGGACACCGCCGAACAC CP082846.1 Large ribosomal subunit protein uL2 Mycolicibacterium smegmatis LR222 C101A 0.030425945 1 LEVO MGIRKYKPTTPGRRGASVSDFAEITRSTPEKSLVRPLHGKGGRNAHGRITTRHKGGGHKRAYRVIDFRRHDKDGVNAKVA HIEYDPNRTANIALLHYLDGEKRYIIAPQGLKQGDVIESGANADIKPGNNLPLRNIPAGTVIHAVELRPGGGAKLARSAG VSIQLLGKEGTYAALRMPSGEIRRVDVRCRATVGEVGNAEQSNINWGKAGRMRWKGKRPTVRGVVMNPVDHPHGGGEGKT SGGRHPVSPWGKPEGRTRKPNKPSDKLIVRRRRTGKKR A0QSD4 Large ribosomal subunit protein uL3 Mycolicibacterium smegmatis LR222 C101A 0.023011392999999998 1 LEVO MARKGILGTKLGMTQVFDENNKVVPVTVVKAGPNVVTRIRTTERDGYSAVQLAYGEISPRKVIKPVAGQFAAAGVNPRRH VAELRLDDEAAVAEYEVGQELTAEIFSDGAYVDVTGTSKGKGFAGTMKRHGFRGQGAAHGAQAVHRRPGSIGGCATPGRV FKGTRMSGRMGNDRVTTQNLKVHKVDAENGVLLIKGAIPGRNGGLVVVRSAIKRGEK A0QSD1 Large ribosomal subunit protein uL4 Mycolicibacterium smegmatis LR222 C101A 0.022920949 1 LEVO MTLKVDVKTPAGKTDGSVELPAELFDVEPNIALMHQVVTAQLAAKRQGTHSTKTRGEVSGGGKKPYRQKGTGRARQGSTR APQFTGGGTVHGPKPRDYSQRTPKKMIAAALRGALSDRARNDRIHAVTELVEGQTPSTKSAKTFLGTLTENKKVLVVIGR TDEVGAKSVRNLPGVHVISPDQLNTYDVLNADDVVFSVEALNAYISANSKEGASV A0QSD2 Large ribosomal subunit protein uL5 Mycolicibacterium smegmatis LR222 C101A 0.021152328 1 LEVO MTTTEKALPRLKQRYREEIREALQQEFNYANVMQIPGVVKVVVNMGVGDAARDAKLINGAINDLALITGQKPEVRRARKS IAQFKLREGMPIGARVTLRGDRMWEFLDRLISIALPRIRDFRGLSPKQFDGTGNYTFGLNEQSMFHEIDVDSIDRPRGMD ITVVTTATNDAEGRALLRALGFPFKEN A0QSG1 Large ribosomal subunit protein uL6 Mycolicibacterium smegmatis LR222 C101A 0.019483361 1 LEVO MSRIGKQPVPVPSGVDVTINGQNLSVKGPKGTLTLDVAEPISVSRAEDGAIVVTRPDDERRSRSLHGLSRTLIANLVTGV TEGYTQKMEIFGVGYRVQLKGQNLEFALGYSHPVLIEAPEGITFAVESPTKFSVSGIDKQKVGQISAVIRRLRRPDPYKG KGVRYEGEQIRRKVGKTGK A0QSG4 50S ribosomal protein L9 Mycolicibacterium smegmatis LR222 C101A 0.015949253 1 LEVO MKLILTAEVEHLGAAGDTVEVKDGYGRNYLLPRGLAIVASRGAERQAEEIRRARESKVIRDIEHANELKTALEGLGDVTL SVNAAGDTGKLFGSVTAADVVNAIKKAGGPNLDKRTVQLAKAHIKSVGTHPVTVKLHTGVEAKVSLNVVAQ A0A653F9J9 Large ribosomal subunit protein uL10 Mycolicibacterium smegmatis LR222 C101A 0.017964657999999998 1 LEVO MAKADKATAVADIAEQFKASTATVVTEYRGLTVANLAELRRALGDSATYTVAKNTLVKRAASEAGIEGLDELFAGPTAIA FVKGEAVDAAKAIKKFAKDNKALVIKGGYMDGKALSVADVEKIADLESREVLLAKLAGAMKGNLSKAAGLFNAPASQVAR LAAALQEKKAGEEA A0QS62 Large ribosomal subunit protein uL11 Mycolicibacterium smegmatis LR222 C101A 0.015023373999999999 1 LEVO MAPKKKVAGLIKLQIQAGQANPAPPVGPALGQHGVNIMEFCKAYNAATESQRGNVIPVEITVYEDRSFTFALKTPPAAKL LLKAAGVQKGSGEPHKTKVAKVTWDQVREIAETKKADLNANDIDAAAKIIAGTARSMGITVE A0QS45 Large ribosomal subunit protein uL13 Mycolicibacterium smegmatis LR222 C101A 0.016146689 1 LEVO MPTYTPKAGDTTRSWYVIDASDVVLGRLASAAATLLRGKHKPTFTPNVDGGDFVIVINADKIAVSGDKLTKKFAYRHSGY PGGLRKRTIGELLEKHPTRVVENAIIGMLPHNKLGRQIQKKLKVYAGPDHPHAAQQPIPFEIKQVAQ A0QSP8 Large ribosomal subunit protein uL14 Mycolicibacterium smegmatis LR222 C101A 0.013400625 1 LEVO MIQQESRLKVADNTGAKEILCIRVLGGSSRRYAGIGDVIVATVKDAIPGGNVKRGDVVKAVVVRTVKERRRADGSYIKFD ENAAVIIKNDNDPRGTRIFGPVGRELREKKFMKIVSLAPEVL A0QSF9 Large ribosomal subunit protein uL15 Mycolicibacterium smegmatis LR222 C101A 0.015602244 1 LEVO MSVIKLHDLKPAPGEKKAKTRVGRGEGSKGKTAGRGTKGTKARKNVPVMFEGGQMPIHMRLPKLKGFKNRFRTEYQVVNV GDINKAFPQGGTVGVDELVAKGLVRKNSLVKVLGDGKLTVKVDVTANKFSGSAREAITAAGGSATEL A0QSG8 Large ribosomal subunit protein uL16 Mycolicibacterium smegmatis LR222 C101A 0.01577424 1 LEVO MLIPRKVKHRKQHHPEQRGIASGGTSVSFGDYGIQALEHAYITNRQIESARIAINRHIKRGGKVWINIFPDRPLTKKPAE TRMGSGKGSPEWWVANVKPGRVLFELSYPDEKTARDALTRAIHKLPIKARIVTREEQF A0QSD8 Large ribosomal subunit protein bL17 Mycolicibacterium smegmatis LR222 C101A 0.019210605 1 LEVO MPKPTKGPRLGGSSSHQSALLANLATSLFEHGRIKTTEPKARALRPYAEKLITHAKKGALHNRREVMKKIRDKDVVHTLF AEIGPFYADRNGGYTRIIKVENRKGDNAPMAVIELVREKTVTDEANRARRAAASQAKADERADEKADEKAEETVEETTEA PAEESTEAAAEETV A0QSL9 Large ribosomal subunit protein uL18 Mycolicibacterium smegmatis LR222 C101A 0.013711727999999998 1 LEVO MAHKPVGQNISEVRRNARLRRHARLRKKVAGTAEVPRLVVNRSARHIHVQLVNDLNGTTLAAASSIEADVRAIDGDKKAH SVRVGQLIAERAKAAGVETVVFDRGGYTYGGRIAALADAAREAGLKF A0QSG5 Large ribosomal subunit protein bL19 Mycolicibacterium smegmatis LR222 C101A 0.012892806 1 LEVO MNTLDFVDQASLRDDIPTFSPGDTVNVHVKVIEGSKERIQVFKGVVIRRQGGGISETFTVRKESYGVGVERTFPVHSPNI DHIDVLTRGDVRRAKLYYLRELRGKKAKIKEKR A0QV42 Large ribosomal subunit protein bL20 Mycolicibacterium smegmatis LR222 C101A 0.014494693 1 LEVO MARVKRALNAQKKRRTVLKASKGYRGQRSRLYRKAKEQQLHSLTYAYRDRRARKGEFRKLWISRINAAARANDITYNRLI QGLKAAGVEVDRKNLAELAVSDPAAFTALVDVARAALPEDVNAPSGEAA A0QYU6 Large ribosomal subunit protein bL21 Mycolicibacterium smegmatis LR222 C101A 0.011055894 1 LEVO MATYAIVKTGGKQYKVAAGDVVKVEKLDSEPGASVSLPVALVVDGANVTSKADDLAKVAVTAEVLEHTKGPKIRIHKFKN KTGYHKRQGHRQQLTVLKVTGIK A0R151 Large ribosomal subunit protein uL22 Mycolicibacterium smegmatis LR222 C101A 0.0163536 1 LEVO MSTVTEFPSATAKARYVRVSATKARRVIDLVRGKSVEEALDILRWAPQAASEPVAKVIASAAANAQNNEGLDPSTLVVAT VYADEGPTAKRIRPRAQGRAFRIRKRTSHITVIVESRPPKQKGASAASARSRRAQGSKAAATKKSAETKEGSE A0QSD6 Large ribosomal subunit protein uL23 Mycolicibacterium smegmatis LR222 C101A 0.011047835999999998 1 LEVO MATITDPRDIILAPVISEKSYGLIEDNVYTFVVHPDSNKTQIKIAIEKIFDVKVDSVNTANRQGKRKRTRTGFGKRKSTK RAIVKLAAGSKPIDLFGAPA A0QSD3 Large ribosomal subunit protein uL24 Mycolicibacterium smegmatis LR222 C101A 0.011228946 1 LEVO MKVHKGDTVLVISGKDKGAKGKVLVAYPDRNKVLVEGVNRIKKHTAVSANERGASSGGIVTQEAPIHVSNVMVVDSDGKP TRVGYRIDDETGKKVRIAKTNGKDI A0QSG0 Large ribosomal subunit protein bL25 Mycolicibacterium smegmatis LR222 C101A 0.022571078 1 LEVO MAKTANIPNKLTANVRTRTGKGASRQARRDGKVPAVLYGHGTDPQHLELNARDFAAVLRSHGTNAILTLDIEGTEQLALT KALDVHPIRRNIQHADLLVVQRGEKVTVEVTVLVEGDATPGTLVTQDANTIEIEAEALSIPEQLTVSVEGVEAGTQITAG QISLPEGVNLISDPELLVVNVVEAPSAEALEEEGAGETGAAEAPAEEAPAEEPAE A0R3D2 Large ribosomal subunit protein bL27 Mycolicibacterium smegmatis LR222 C101A 0.009249582 1 LEVO MAHKKGASSSRNGRDSAAQRLGVKRFGGQVVKAGEILVRQRGTHFHPGVNVGRGGDDTLFALAPGAVEFGAKRGRKTVNI VPVARPEA A0R150 Large ribosomal subunit protein bL28 Mycolicibacterium smegmatis LR222 C101A 0.006891015999999999 1 LEVO MAAVCDICGKGPGFGKSVSHSHRRTSRRWNPNIQPVRAVTRPGGNKQRINACTSCIKAGKVSRA A0QV03 Large ribosomal subunit protein uL29 Mycolicibacterium smegmatis LR222 C101A 0.008790895 1 LEVO MAVGTTPGELRELTDDELKDKLRESKEELFNLRFQMATGQLSNNRRLRTVRQEIARVYTVLRERELGLASGPAGEES A0QSD9 16S rRNA Mycolicibacterium smegmatis LR222 C101A 0.495373656 1 UUUUUGUUUGGAGAGUUUGAUCCUGGCUCAGGACGAACGCUGGCGGCGUGCUUAACACAUGCAAGUCGAACGGAAAGGCC CUUUCGGGGGUACUCGAGUGGCGAACGGGUGAGUAACACGUGGGUGAUCUGCCCUGCACUUUGGGAUAAGCCUGGGAAAC UGGGUCUAAUACCGAAUACACCCUGCUGGUCGCAUGGCCUGGUAGGGGAAAGCUUUUGCGGUGUGGGAUGGGCCCGCGGC CUAUCAGCUUGUUGGUGGGGUGAUGGCCUACCAAGGCGACGACGGGUAGCCGGCCUGAGAGGGUGACCGGCCACACUGGG ACUGAGAUACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGCAAGCCUGAUGCAGCGACGC CGCGUGAGGGAUGACGGCCUUCGGGUUGUAAACCUCUUUCAGCACAGACGAAGCGCAAGUGACGGUAUGUGCAGAAGAAG GACCGGCCAACUACGUGCCAGCAGCCGCGGUAAUACGUAGGGUCCGAGCGUUGUCCGGAAUUACUGGGCGUAAAGAGCUC GUAGGUGGUUUGUCGCGUUGUUCGUGAAAACUCACAGCUUAACUGUGGGCGUGCGGGCGAUACGGGCAGACUAGAGUACU GCAGGGGAGACUGGAAUUCCUGGUGUAGCGGUGGAAUGCGCAGAUAUCAGGAGGAACACCGGUGGCGAAGGCGGGUCUCU GGGCAGUAACUGACGCUGAGGAGCGAAAGCGUGGGGAGCGAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGGU GGGUACUAGGUGUGGGUUUCCUUCCUUGGGAUCCGUGCCGUAGCUAACGCAUUAAGUACCCCGCCUGGGGAGUACGGCCG CAAGGCUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGCGGAGCAUGUGGAUUAAUUCGAUGCAACGCGAAGAA CCUUACCUGGGUUUGACAUGCACAGGACGCCGGCAGAGAUGUCGGUUCCCUUGUGGCCUGUGUGCAGGUGGUGCAUGGCU GUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUGUCUCAUGUUGCCAGCACGUUAUG GUGGGGACUCGUGAGAGACUGCCGGGGUCAACUCGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGCCCCUUAUGUCCA GGGCUUCACACAUGCUACAAUGGCCGGUACAAAGGGCUGCGAUGCCGUGAGGUGGAGCGAAUCCUUUCAAAGCCGGUCUC AGUUCGGAUCGGGGUCUGCAACUCGACCCCGUGAAGUCGGAGUCGCUAGUAAUCGCAGAUCAGCAACGCUGCGGUGAAUA CGUUCCCGGGCCUUGUACACACCGCCCGUCACGUCAUGAAAGUCGGUAACACCCGAAGCCGGUGGCCUAACCCUUGUGGA GGGAGCCGUCGAAGGUGGGAUCGGCGAUUGGGACGAAGUCGUAACAAGGUAGCCGUACCGGAAGGUGCGGCUGGAUCACC UCCUUUCU CP082846.1 Small ribosomal subunit protein uS2 Mycolicibacterium smegmatis LR222 C101A 0.03014523 1 LEVO MAVVTMKQLLDSGAHFGHQTRRWNPKMKRFIFTDRNGIYIIDLQQTLTYIDKAYEFVKETVAHGGTVLFVGTKKQAQESI AEEATRVGMPYVNQRWLGGMLTNFSTVHKRLQRLKELEAMEQTGGFEGRTKKEILMLTREKNKLERSLGGIRDMQKVPSA VWVVDTNKEHIAVGEARKLGIPVIAILDTNCDPDVVDYPIPGNDDAIRSAALLTKVIASAVAEGLQARAGQGSGEKPAEG AEPLAEWEQELLAGATAGAADASAEGAAAPESSTDAS A0QVB8 Small ribosomal subunit protein uS3 Mycolicibacterium smegmatis LR222 C101A 0.030191226999999998 1 LEVO MGQKINPHGFRLGITTEWKSRWYADKQYKDYVKEDVAIRKLLATGLERAGIADVEIERTRDRVRVDIHTARPGIVIGRRG TEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVAEQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGA EMSRSEFYREGRVPLHTLRADIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPASDRPRRERPSGTRPRRSGSA GTTATSTEAGRAATSDAPAAGTAAAAEAPAESTES A0QSD7 Small ribosomal subunit protein uS4 Mycolicibacterium smegmatis LR222 C101A 0.023415787 1 LEVO MARYTGPATRKSRRLGVDLVGGDQSFEKRPYPPGQHGRARIKESEYRQQLQEKQKARFSYGVMEKQFRRYYEEANRQPGK TGDNLLRILESRLDNVVYRAGLARTRRMARQLVSHGHFLVNGVKVDIPSYRVSQYDIIDVKEKSLNTLPFQIARETAGER PIPSWLQVVGERQRILVHQLPERAQIDVPLTEQLIVELYSK A0QSL7 Small ribosomal subunit protein uS5 Mycolicibacterium smegmatis LR222 C101A 0.021946089999999998 1 LEVO MAEQAGAGSAQDNRGGRGRRDDRGGRGRDGGDKSNYIERVVSINRVSKVVKGGRRFSFTALVIVGDGKGMVGVGYGKAKE VPAAIAKGVEEARKNFFRVPLIGSTITHPVQGEAAAGVVMLRPASPGTGVIAGGAARAVLECAGVHDILAKSLGSDNAIN VVHATVAALKLLQRPEEVAARRGLPIEDVAPAGMLKARRESEALAAAAAREGSA A0QSG6 Small ribosomal subunit protein bS6 Mycolicibacterium smegmatis LR222 C101A 0.010991637 1 LEVO MRPYEIMVILDPTLDERTVAPSLETFLNVIRKDGGTVDKVDIWGRRRLAYEIAKHAEGIYAVIDVKAEPATVSELDRQLN LNESVLRTKVLRTDKH A0A2U9Q0X2 Small ribosomal subunit protein uS7 Mycolicibacterium smegmatis LR222 C101A 0.017660375 1 LEVO MPRKGPAPKRPLVNDPVYGSQLVTQLVNKVLLEGKKSLAERIVYGALEQAREKTGTDPVVTLKRALDNVKPALEVRSRRV GGATYQVPVEVRPDRSTTLALRWLVNFSRQRREKTMVERLANEILDASNGLGASVKRREDTHKMAEANRAFAHYRW A0QS97 Small ribosomal subunit protein uS8 Mycolicibacterium smegmatis LR222 C101A 0.014492638 1 LEVO MTMTDPIADFLTRLRNANSAYHDEVTLPHSKLKANIAEILKREGYISDYRTEDARVGKSLVVQLKYGPSRERSIAGLRRV SKPGLRVYAKSTNLPRVLGGLGVAIISTSSGLLTDRQAARQGVGGEVLAYVW A0QSG3 Small ribosomal subunit protein uS9 Mycolicibacterium smegmatis LR222 C101A 0.016794365000000002 1 LEVO MTDVTETEVVTESAEPREPVIIDRPIQTVGRRKEAVVRVRLVPGTGQFNLDGRTLENYFPNKVHQQLIKAPLVTVDRVDQ FDIYAHLDGGGPSGQAGALRLAIARALILVQPEDRPALKKAGFLTRDPRAIERKKYGLKKARKAPQYSKR A0QSP9 Small ribosomal subunit protein uS10 Mycolicibacterium smegmatis LR222 C101A 0.011454312999999999 1 LEVO MAGQKIRIRLKAYDHEAIDASARKIVETVTRTGASVVGPVPLPTEKNVYCVIRSPHKYKDSREHFEMRTHKRLIDILDPT PKTVDALMRIDLPASVDVNIQ A0QSD0 Small ribosomal subunit protein uS11 Mycolicibacterium smegmatis LR222 C101A 0.014671762 1 LEVO MAQAKKGGTAAKKGQKTRRREKKNVPHGAAHIKSTFNNTIVSITDPQGNVIAWASSGHVGFKGSRKSTPFAAQLAAENAA RKAQEHGVKKVDVFVKGPGSGRETAIRSLQAAGLEVGTISDVTPQPHNGCRPPKRRRV A0QSL6 Small ribosomal subunit protein uS12 Mycolicibacterium smegmatis LR222 C101A 0.013896365999999999 1 LEVO MPTIQQLVRKGRRDKIAKVKTAALKGSPQRRGVCTRVYTTTPKKPNSALRKVARVKLTSQVEVTAYIPGEGHNLQEHSMV LVRGGRVKDLPGVRYKIIRGSLDTQGVKNRKQARSRYGAKKEKS A0QS96 Small ribosomal subunit protein uS13 Mycolicibacterium smegmatis LR222 C101A 0.014249619 1 LEVO MARLVGVDLPRDKRMEIALTYIYGIGRTRSNEILAATGIDKNMRTKDLTDDQVTVLRDYIEGNLKVEGDLRREVQADIRR KIEIGCYQGLRHRRGLPVRGQRTKTNARTRKGPKRTIAGKKKAR A0QSL5 Small ribosomal subunit protein uS14B Mycolicibacterium smegmatis LR222 C101A 0.006976408999999999 1 LEVO MAKKALVHKANKKPKFAVRAYTRCNKCGRPHSVYRKFGLCRICLREMAHAGELPGVQKSSW A0QSG2 Small ribosomal subunit protein uS15 Mycolicibacterium smegmatis LR222 C101A 0.010368097 1 LEVO MALTAEQKKEILGQYGLHDTDTGSPEAQVALLTKRIQDLTEHLKVHKHDHHSRRGLLLLVGRRRRLLKYVAQVDVARYRS LIERLGLRR A0QVQ3 Small ribosomal subunit protein bS16 Mycolicibacterium smegmatis LR222 C101A 0.016795206999999996 1 LEVO MAVKIKLTRLGKIRNPQYRIIVADARTRRDGRAIEVIGRYHPKEEPSLIQIDSERAQYWLGVGAQPTEPVLALLKITGDW QKFKGLPGAEGTLKVKEPKPSKLDLFNAALAEAESGTTAAATTPKKKKAPKKDEAAEAPAEAAEAPAEAADAASES A0QV37 Small ribosomal subunit protein uS17 Mycolicibacterium smegmatis LR222 C101A 0.011127002 1 LEVO MADQKGPKYTPAAEKPRGRRKTAIGYVVSDKMQKTIVVELEDRKSHPLYGKIIRTTKKVKAHDENGEAGIGDRVSLMETR PLSATKRWRLVEILEKAK A0QSE0 Small ribosomal subunit protein bS18B Mycolicibacterium smegmatis LR222 C101A 0.009524188 1 LEVO MAKSNKRRPAPEKPVKTRKCVFCSKKGQTIDYKDTALLRTYISERGKIRARRVTGNCVQHQRDIAVAVKNAREVALLPFG SSTR A0R7F7 Small ribosomal subunit protein uS19 Mycolicibacterium smegmatis LR222 C101A 0.010800602 1 LEVO MPRSLKKGPFVDDHLLKKVDVQNEKNTKQVIKTWSRRSTIIPDFIGHTFAVHDGRKHVPVFVTEAMVGHKLGEFAPTRTF KGHIKDDRKSKRR A0QSD5 Small ribosomal subunit protein bS20 Mycolicibacterium smegmatis LR222 C101A 0.009556104 1 LEVO MANIKSQIKRIRTNERRRLRNQSVKSSLRTAIRGFREAVDAGDKDKASELLHATSRKLDKAASKGVIHPNQAANKKSALA LALNKL A0R102 Conserved domain protein Mycolicibacterium smegmatis LR222 C101A 0.0041643 1 LEVO MGSVIKKRRKRMSKKKHRKLLRRTRVQRRKLGK A0QR10 MAGNESIUM ION 2.4305e-05 107 MG singleParticle particle 7.6 Quantifoil R1.2/1.3 COPPER 300 CARBON GLOW DISCHARGE 15 OTHER ETHANE 100 277.15 FEI VITROBOT MARK IV TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 0.6 2.1 GATAN K3 BIOQUANTUM (6k x 4k) 5760 4092 5060 2.0 52.51 1 CTFFIND 4.1 PHASE FLIPPING AND AMPLITUDE CORRECTION

RELION-3.1 3D initial reconstruction (stochastic gradient descent method)

3.24 FSC 0.143 CUT-OFF RELION 3.1 227969 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD RELION 3.1 5ZEB PDB experimental model FLEXIBLE FIT emd_47363_additional_11.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 427.6 427.6 427.6 90.0 90.0 90.0 X Y Z -0.004804473 1.9176397 0.0013528871 0.025821071 1.069 1.069 1.069 AUTHOR ::::EMDATABANK.org::::EMD-47363:::: DeepEMhancer-sharpened postprocessed map from the multibody refinement of the 30S subunit emd_47363_additional_10.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 427.6 427.6 427.6 90.0 90.0 90.0 X Y Z -0.002349771 2.037749 0.0028359035 0.03967021 1.069 1.069 1.069 AUTHOR ::::EMDATABANK.org::::EMD-47363:::: DeepEMhancer-sharpened postprocessed map from the multibody refinement of the 50S subunit emd_47363_additional_9.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 427.6 427.6 427.6 90.0 90.0 90.0 Z Y X -26.205991999999998 38.725955999999996 -0.0005233048 0.98473877 1.069 1.069 1.069 AUTHOR ::::EMDATABANK.org::::EMD-47363:::: PHENIX-sharpened postprocessed map from the multibody refinement of the 30S subunit emd_47363_additional_8.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 427.6 427.6 427.6 90.0 90.0 90.0 Z Y X -16.89836 28.489502000000002 -0.000931738 0.9761753 1.069 1.069 1.069 AUTHOR ::::EMDATABANK.org::::EMD-47363:::: PHENIX-sharpened postprocessed map from the multibody refinement of the 50S subunit emd_47363_additional_7.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 427.6 427.6 427.6 90.0 90.0 90.0 X Y Z -0.037104752 0.07051997 -0.00019997174 0.003975931 1.069 1.069 1.069 AUTHOR ::::EMDATABANK.org::::EMD-47363:::: Half-map from the multibody refinement of the unmethylated M. smegmatis 30S subunit emd_47363_additional_6.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 427.6 427.6 427.6 90.0 90.0 90.0 X Y Z -0.024161905 0.0645728 -0.00008956948 0.002701431 1.069 1.069 1.069 AUTHOR ::::EMDATABANK.org::::EMD-47363:::: Multibody refined map of the unmethylated M. smegmatis emd_47363_additional_5.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 427.6 427.6 427.6 90.0 90.0 90.0 X Y Z -0.02100195 0.053313967 -0.00006657941 0.0028041953 1.069 1.069 1.069 AUTHOR ::::EMDATABANK.org::::EMD-47363:::: Refine3D map of the unmethylated M. smegmatis 70S ribosome emd_47363_additional_4.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 427.6 427.6 427.6 90.0 90.0 90.0 X Y Z -0.039362244 0.07204613 -0.0001504229 0.004146497 1.069 1.069 1.069 AUTHOR ::::EMDATABANK.org::::EMD-47363:::: Half-map from the multibody refinement of the unmethylated M. smegmatis 30S subunit emd_47363_additional_3.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 427.6 427.6 427.6 90.0 90.0 90.0 X Y Z -0.039148744 0.08118487 -0.00013590425 0.005121145 1.069 1.069 1.069 AUTHOR ::::EMDATABANK.org::::EMD-47363:::: Half-map from the multibody refinement of the unmethylated M. smegmatis 50S subunit emd_47363_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 427.6 427.6 427.6 90.0 90.0 90.0 X Y Z -0.016350208 0.053185277 -0.00015621936 0.0018187946 1.069 1.069 1.069 AUTHOR ::::EMDATABANK.org::::EMD-47363:::: Multibody refined map of the unmethylated M. smegmatis 30S subunit emd_47363_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 427.6 427.6 427.6 90.0 90.0 90.0 X Y Z -0.042347535 0.08668647 -0.00008199141 0.0052742576 1.069 1.069 1.069 AUTHOR ::::EMDATABANK.org::::EMD-47363:::: Half-map from the multibody refinement of the unmethylated M. smegmatis 50S subunit emd_47363_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 427.6 427.6 427.6 90.0 90.0 90.0 X Y Z -0.03815353 0.0728858 -0.00008594027 0.005419085 1.069 1.069 1.069 AUTHOR ::::EMDATABANK.org::::EMD-47363:::: Half-map from the 3D refinement of the unmethylated M. smegmatis 70S ribosome emd_47363_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 427.6 427.6 427.6 90.0 90.0 90.0 X Y Z -0.041192748 0.07724492 -0.00004761313 0.0056146285 1.069 1.069 1.069 AUTHOR ::::EMDATABANK.org::::EMD-47363:::: Half-map from the 3D refinement of the unmethylated M. smegmatis 70S ribosome