2024-10-23 REL PDBe PDBe PDBe 2019-03-15 2019-07-24 2019-09-04 2024-10-23 Spanish Ministry of Science, Innovation, and Universities BFU2014-54181 Spain Spanish Ministry of Science, Innovation, and Universities BFU2014-53550-P Spain Spanish Ministry of Science, Innovation, and Universities BFU2017-83720-P Spain Spanish Ministry of Science, Innovation, and Universities MDM-2014-0435 Spain Spanish Ministry of Science, Innovation, and Universities SEV-2013-0347 Spain Spanish Ministry of Science, Innovation, and Universities RYC-2011-09071 Spain European Commission 653706 Bacteriophage ejection complex Cuervo A Fabrega-Ferrer M viral complex, DNA ejection, VIRAL PROTEIN Cuervo A Fabrega-Ferrer M Machon C Conesa JJ Fernandez FJ Perez-Luque R Perez-Ruiz M Pous J Vega MC Carrascosa JL Coll M Structures of T7 bacteriophage portal and tail suggest a viral DNA retention and ejection mechanism. Nat Commun UK 10 3746 3746 2019 31431626 doi:10.1038/s41467-019-11705-9 2041-1723 EMD-4667 other EM volume
Cryo-EM structure of T7 bacteriophage portal protein, 13mer, closed valve
 EMD-4669 other EM volume
Cryo-EM structure of T7 bacteriophage portal protein, 12mer, open valve
 6r21 FULLOVERLAP Bacteriophage tail complex Bacteriophage tail complex 0 1 2 3 Enterobacteria phage T7 0.534 Portal protein 1 1 Enterobacteria phage T7 Adaptor protein 1 2 Enterobacteria phage T7 Nozzle protein 1 3 Enterobacteria phage T7 Portal protein Enterobacteria phage T7 0.05917398399999999 12 Escherichia coli LEVO MAEKRTGLAEDGAKSVYERLKNDRAPYETRAQNCAQYTIPSLFPKDSDNASTDYQTPWQAVGARGLNNLASKLMLALFPM QTWMRLTISEYEAKQLLSDPDGLAKVDEGLSMVERIIMNYIESNSYRVTLFEALKQLVVAGNVLLYLPEPEGSNYNPMKL YRLSSYVVQRDAFGNVLQMVTRDQIAFGALPEDIRKAVEGQGGEKKADETIDVYTHIYLDEDSGEYLRYEEVEGMEVQGS DGTYPKEACPYIPIRMVRLDGESYGRSYIEEYLGDLRSLENLQEAIVKMSMISSKVIGLVNPAGITQPRRLTKAQTGDFV TGRPEDISFLQLEKQADFTVAKAVSDAIEARLSFAFMLNSAVQRTGERVTAEEIRYVASELEDTLGGVYSILSQELQLPL VRVLLKQLQATQQIPELPKEAVEPTISTGLEAIGRGQDLDKLERCVTAWAALAPMRDDPDINLAMIKLRIANAIGIDTSG ILLTEEQKQQKMAQQSMQMGMDNGAAALAQGMAAQATASPEAMAAAADSVGLQPGI P03728 Tail tubular protein gp11 Enterobacteria phage T7 0.026202819999999998 12 Escherichia coli LEVO MRGSHHHHHHGMASMTGGNNMGRDLYDDDDKDPSSMRSYDMNVETAAELSAVNDILASIGEPPVSTLEGDANADAANARR ILNKINRQIQSRGWTFNIEEGITLLPDVYSNLIVYSDDYLSLMSTSGQSIYVNRGGYVYDRTSQSDRFDSGITVNIIRLR DYDEMPECFRYWIVTKASRQFNNRFFGAPEVEGVLQEEEDEARRLCMEYEMDYGGYNMLDGDAFTSGLLTR P03746 Tail tubular protein gp12 Enterobacteria phage T7 0.089480594 6 Escherichia coli LEVO MALISQSIKNLKGGISQQPDILRYPDQGSRQVNGWSSETEGLQKRPPLVFLNTLGDNGALGQAPYIHLINRDEHEQYYAV FTGSGIRVFDLSGNEKQVRYPNGSNYIKTANPRNDLRMVTVADYTFIVNRNVVAQKNTKSVNLPNYNPNQDGLINVRGGQ YGRELIVHINGKDVAKYKIPDGSQPEHVNNTDAQWLAEELAKQMRTNLSDWTVNVGQGFIHVTAPSGQQIDSFTTKDGYA DQLINPVTHYAQSFSKLPPNAPNGYMVKIVGDASKSADQYYVRYDAERKVWTETLGWNTEDQVLWETMPHALVRAADGNF DFKWLEWSPKSCGDVDTNPWPSFVGSSINDVFFFRNRLGFLSGENIILSRTAKYFNFYPASIANLSDDDPIDVAVSTNRI AILKYAVPFSEELLIWSDEAQFVLTASGTLTSKSVELNLTTQFDVQDRARPFGIGRNVYFASPRSSFTSIHRYYAVQDVS SVKNAEDITSHVPNYIPNGVFSICGSGTENFCSVLSHGDPSKIFMYKFLYLNEELRQQSWSHWDFGENVQVLACQSISSD MYVILRNEFNTFLARISFTKNAIDLQGEPYRAFMDMKIRYTIPSGTYNDDTFTTSIHIPTIYGANFGRGKITVLEPDGKI TVFEQPTAGWNSDPWLRLSGNLEGRMVYIGFNINFVYEFSKFLIKQTADDGSTSTEDIGRLQLRRAWVNYENSGTFDIYV ENQSSNWKYTMAGARLGSNTLRAGRLNLGTGQYRFPVVGNAKFNTVYILSDETTPLNIIGCGWEGNYLRRSSGI P03747 singleParticle particle 0.8 7.8 100.0 NaCl 10.0 MgCl2 50.0 Tris-HCl
50 mM Tris-HCl pH 7.8, 100 mM NaCl, 10 mM MgCl2
 Quantifoil R2/2 COPPER/RHODIUM 300 CARBON HOLEY
acetone and treated with 0.1% w/v poly-L-Lysine (Sigma) for 1 min in water
 ETHANE 95 295.15 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K2 SUMMIT (4k x 4k) COUNTING 0.84 1 C6 3.33 FSC 0.143 CUT-OFF RELION 92382 MAXIMUM LIKELIHOOD RELION MAXIMUM LIKELIHOOD RELION RELION emd_4706.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 350 350 350 0 0 0 350 350 350 366.8 366.8 366.8 90.0 90.0 90.0 X Y Z -0.002652 0.255892 0.00077379897 0.006800785 1.048 1.048 1.048 0.0113 AUTHOR Bacteriophage ejection complex 6QWP PDB experimental model RIGID BODY FIT REAL 5MU4 PDB experimental model RIGID BODY FIT AB INITIO MODEL