2025-04-30 REL RCSB INITIAL_RELEASE REPOSITORY DATABASE_REFERENCES citation citation_author em_admin _citation.page_first _citation.page_last _citation.pdbx_database_id_PubMed _citation.title _em_admin.last_update RCSB RCSB 2024-08-07 2025-04-16 2025-04-16 2025-04-30 Other private United States Cryo-EM structure of CDK2/CyclinE1 in complex with CRBN/DDB1 and Cpd 4 Kwiatkowski N Liang T Sha Z Collier PN Yang A Sathappa M Paul A Su L Zheng X Aversa R Li K Mehovic R Breitkopf SB Chen D Howarth CL Yuan K Jo H Growney JD Weiss M Williams J kinase, degrader, ternary complex, CDK2, CELL CYCLE Kwiatkowski N Liang T Sha Z Collier PN Yang A Sathappa M Paul A Su L Zheng X Aversa R Li K Mehovic R Kolodzy C Breitkopf SB Chen D Howarth CL Yuan K Jo H Growney JD Weiss M Williams J CDK2 heterobifunctional degraders co-degrade CDK2 and cyclin E resulting in efficacy in CCNE1-amplified and overexpressed cancers. Cell Chem Biol US 32 556 569.e24 2025 40250405 doi:10.1016/j.chembiol.2025.03.006 2451-9456 EMD-46465 focused EM volume
Cryo-EM structure of CDK2/CyclinE1 in complex with CRBN/DDB1 and Cpd 4 (local mask)
 9d0w FULLOVERLAP Cryo-EM structure of CDK2/CyclinE1 in complex with CRBN/DDB1 and Cpd 4 Cryo-EM structure of CDK2/CyclinE1 in complex with CRBN/DDB1 and Cpd 4 0 1 2 3 4 Homo sapiens DNA damage-binding protein 1 Homo sapiens 0.12813957799999998 1 Spodoptera frugiperda LEVO MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFIL TAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLE ELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNG VVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHA SIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS QEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGL WTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRT FRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES PRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFE VLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKL LASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLV TSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGM KREATADDLIKVVEELTRIHWSHPQFEK Q16531 Protein cereblon Homo sapiens 0.046465374999999996 1 Spodoptera frugiperda LEVO GSEAKKPNIINFDTSLPTSHTYLGADMEEFHGRTLHDDDSCQVIPVLPQVMMILIPGQTLPLQLFHPQEVSMVRNLIQKD RTFAVLAYSNVQEREAQFGTTAEIYAYREEQDFGIEIVKVKAIGRQRFKVLELRTQSDGIQQAKVQILPECVLPSTMSAV QLESLNKCQIFPSKPVSREDQCSYKWWQKYQKRKFHCANLTSWPRWLYSLYDAETLMDRIKKQLREWDENLKDDSLPSNP IDFSYRVAACLPIDDVLRIQLLKIGSAIQRLRCELDIMNKCTSLCCKQCQETEITTKNEIFSLSLCGPMAAYVNPHGYVH ETLTVYKACNLNLIGRPSTEHSWFPGYAWTVAQCKICASHIGWKFTATKKDMSPQKFWGLTRSALLPTIPDTEDEISPDK VILCL Q96SW2 Cyclin-dependent kinase 2 Homo sapiens 0.034056469 1 Spodoptera frugiperda LEVO MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVF EFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTY (TPO)HEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPD YKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKPVPHLRL P24941 2.7.11.22 G1/S-specific cyclin-E1 Homo sapiens 0.033140578 1 Spodoptera frugiperda LEVO SGSIIAPSRGSPLPVLSWANREEVWKIMLNKEKTYLRDQHFLEQHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDF FDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNV YMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFSSSELMQKVSGYQWCDIENCVKWMV PFAMVIRETGSSKLKHFRGVADEDAHNIQTHRDSLDLLDKARAKKA P24864 ZINC ION 6.5409e-05 1 ZN (3R)-3-(5-{4-[(2-{4-[(8-cyclopentyl-7-oxo-7,8-dihydropyrido[2,3-d]pyrimidin-2-yl)amino]-3-methylbenzene-1-sulfonyl}-7-azaspiro[3.5]nonan-7-yl)methyl]piperidin-1-yl}-4-fluoro-3-methyl-2-oxo-2,3-dihydro-1H-1,3-benzimidazol-1-yl)piperidine-2,6-dione 0.000880041 1 A1A1I singleParticle particle 7.4 ETHANE TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 0.5 2.0 GATAN K3 BIOCONTINUUM (6k x 4k) 48.0 1 C1 2.95 FSC 0.143 CUT-OFF cryoSPARC 4.4.1 537511 RANDOM ASSIGNMENT cryoSPARC 4.41 MAXIMUM LIKELIHOOD cryoSPARC 4.41 emd_46464.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 352 352 352 0 0 0 352 352 352 369.152 369.152 369.152 90.0 90.0 90.0 X Y Z -0.0058383564 1.9126251 0.00087967486 0.02214877 1.0487273 1.0487273 1.0487273 0.05 AUTHOR emd_46464_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 352 352 352 0 0 0 352 352 352 369.1424 369.1424 369.1424 90.0 90.0 90.0 X Y Z -0.45649043 0.9727224 0.00039746266 0.040916886 1.0487 1.0487 1.0487 AUTHOR emd_46464_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 352 352 352 0 0 0 352 352 352 369.1424 369.1424 369.1424 90.0 90.0 90.0 X Y Z -0.43803078 0.94414884 0.00040097753 0.04096825 1.0487 1.0487 1.0487 AUTHOR