2024-05-15 REL PDBe PDBe PDBe 2019-02-25 2019-07-24 2019-08-28 2024-05-15 European Union 665385 Austria Structure of ovine transhydrogenase in the presence of NADP+ in a "double face-down" conformation Kampjut D Sazanov LA mitochondrial, proton-translocating, nicotinamide nucleotide transhydrogenase, MEMBRANE PROTEIN Kampjut D Sazanov LA Structure and mechanism of mitochondrial proton-translocating transhydrogenase. Nature UK 573 291 295 2019 31462775 doi:10.1038/s41586-019-1519-2 1476-4687 0006 NATUAS 6qti FULLOVERLAP Nicotinamide nucleotide transhydrogenase in the presence of NADP+ Nicotinamide nucleotide transhydrogenase in the presence of NADP+ 0 1 Ovis aries 0.22 Nicotinamide nucleotide transhydrogenase Ovis aries 0.11401030499999999 2 LEVO MANLLKTVVTGCSCPFLSNLGSCKVLPGKKNFLRTFHTHRILWCKAPVKPGIPYKQLTVGVPKEIFQNEKRVALSPAGVQ ALVKQGFNVVVESGAGEASKFSDDHYRAAGAQIQGAKEVLASDLVVKVRAPMLNPTLGIHEADLLKTSGTLISFIYPAQN PDLLNKLSKRNTTVLAMDQVPRVTIAQGYDALSSMANIAGYKAVVLAANHFGRFFTGQITAAGKVPPAKILIVGGGVAGL ASAGAAKSMGAIVRGFDTRAAALEQFKSLGAEPLEVDLKESGEGQGGYAKEMSKEFIEAEMKLFAQQCKEVDILISTALI PGKKAPILFNKEMIESMKEGSVVVDLAAEAGGNFETTKPGELYVHKGITHIGYTDLPSRMATQASTLYSNNITKLLKAIS PDKDNFYFEVKDDFDFGTMGHVIRGTVVMKDGQVIFPAPTPKNIPQGAPVKQKTVAELEAEKAATITPFRKTMTSASVYT AGLTGILGLGIAAPNLAFSQMVTTFGLAGIVGYHTVWGVTPALHSPLMSVTNAISGLTAVGGLVLMGGHLYPSTTSQGLA ALATFISSVNIAGGFLVTQRMLDMFKRPTDPPEYNYLYLLPAGTFVGGYLASLYSGYNIEQIMYLGSGLCCVGALAGLST QGTARLGNALGMIGVAGGLAATLGGLKPCPELLAQMSGAMALGGTIGLTIAKRIQISDLPQLVAAFHSLVGLAAVLTCIA EYIIEYPHFATDAAANLTKIVAYLGTYIGGVTFSGSLVAYGKLQGILKSAPLLLPGRHLLNAGLLAASVGGIIPFMMDPS FTTGITCLGSVSALSAVMGVTLTAAIGGADMPVVITVLNSYSGWALCAEGFLLNNNLLTIVGALIGSSGAILSYIMCVAM NRSLANVILGGYGTTSTAGGKPMEISGTHTEINLDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKMLSEQGKKVRF GIHPVAGRMPGQLNVLLAEAGVPYDIVLEMDEINHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWKSKQVIV MKRSLGVGYAAVDNPIFYKPNTAMLLGDAKKTCDALQAKVRESYQK W5PFI3 NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE 0.0007434049999999999 2 NAP NICOTINAMIDE-ADENINE-DINUCLEOTIDE 0.0006634249999999999 2 NAD 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE 0.0007901449999999999 12 PC1 DODECANE 0.000170335 3 D12 singleParticle particle 5 7.4 20.0 HEPES 50.0 NaCl Sodium chloride 1.0 EDTA Quantifoil R0.6/1 COPPER 300 GLOW DISCHARGE AIR 0.0007 ETHANE 100 277 FEI VITROBOT MARK IV
4-6 s blotting time.
Sample was purified in LMNG (final conc. 0.06%) and contained 0.05% CHAPS as a secondary detergent as well as 5 mM NADP+.
 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K2 SUMMIT (4k x 4k) SUPER-RESOLUTION 1 2160 10.0 72.0 1 1076677
Reconstruction from a previous dataset
 C1 2.9 FSC 0.143 CUT-OFF RELION 3.0 98294 MAXIMUM LIKELIHOOD RELION 2.1 MAXIMUM LIKELIHOOD RELION 3.0 emd_4635.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 117 119 128 0 0 0 128 119 117 136.32 126.73501 124.605 90.0 90.0 90.0 Z Y X -0.096151374 0.19715394 0.0024106095 0.014039831 1.065 1.065 1.065 0.035 AUTHOR Combined map from focused refinement of two domains separately: (dII plus dIII) and (dI). 1D4O PDB experimental model AB INITIO MODEL Correlation coefficient, EMRinger score REAL 75.700000000000003