2024-05-15 REL PDBe PDBe PDBe 2019-02-22 2019-04-10 2019-04-10 2024-05-15 Medical Research Council (United Kingdom) MR/N00065X/1 United Kingdom European Research Council 649053 United Kingdom Academy of Finland 255342 Finland Academy of Finland 256518 Finland De Colibus L Roine E Walter TS Ilca SL euryarcheal virus, SH1, VIRUS Colibus L Roine E Walter TS Ilca SL Wang X Wang N Roseman AM Bamford D Huiskonen JT Stuart DI Nat Commun UK 10 1456 1456 2019 30926810 doi:10.1038/s41467-019-09451-z 2041-1723 6qt9 FULLOVERLAP Haloarcula hispanica virus SH1 Haloarcula hispanica virus SH1 0 1 2 3 4 5 6 7 8 Haloarcula hispanica virus SH1 Haloarcula hispanica virus SH1 Capsid 1000.0 28 VIRION SPECIES false false ORF 25 Haloarcula hispanica virus SH1 0.025042206999999997 2 LEVO EYTISHTGGTLGSSKVTTAANQTSPQRETAIIGFECPRKFAEIEYVGQRDSTRFIPRTTESITGTAGDDTVVSLTANIQP VAGETAIEDQDYPVAVAYNVTQGVQVDIDAVDYAADEVTLADNPADGDTVKVWPIMGDGDVQFRLVNQFGQEEGRVYPWA TPLYRWHDFPQLKRGREINLHGSVTWEENETVEVLLDAPQAITWEDSDYPEGQYVSTFEQDVEITL Q4KPG2 ORF 25 Haloarcula hispanica virus SH1 0.024913094 10 LEVO YTISHTGGTLGSSKVTTAANQTSPQRETAIIGFECPRKFAEIEYVGQRDSTRFIPRTTESITGTAGDDTVVSLTANIQPV AGETAIEDQDYPVAVAYNVTQGVQVDIDAVDYAADEVTLADNPADGDTVKVWPIMGDGDVQFRLVNQFGQEEGRVYPWAT PLYRWHDFPQLKRGREINLHGSVTWEENETVEVLLDAPQAITWEDSDYPEGQYVSTFEQDVEITL Q4KPG2 ORF 24 Haloarcula hispanica virus SH1 0.018840627 11 LEVO GNIGNLSAEKQISVYDGQPFVDEQDVPADDPNTPALTIEGPDGYVIAVDAGTPIAPEFRDSNGNKLDPSTRVIVQKCDRQ GNPLGDGIVFNDTLGRFDYEQMRTDPDFMRKTAKSLMIDEREIVKVFVDIPAGANGYDADKSRLTLGDDTSDFGKAVEIV DHDELSDAETRAV Q4KPG3 ORF 24 Haloarcula hispanica virus SH1 0.018272 3 LEVO SAEKQISVYDGQPFVDEQDVPADDPNTPALTIEGPDGYVIAVDAGTPIAPEFRDSNGNKLDPSTRVIVQKCDRQGNPLGD GIVFNDTLGRFDYEQMRTDPDFMRKTAKSLMIDEREIVKVFVDIPAGANGYDADKSRLTLGDDTSDFGKAVEIVDHDELS DAETRAV Q4KPG3 ORF 24 Haloarcula hispanica virus SH1 0.019040887 1 LEVO GNIGNLSAEKQISVYDGQPFVDEQDVPADDPNTPALTIEGPDGYVIAVDAGTPIAPEFRDSNGNKLDPSTRVIVQKCDRQ GNPLGDGIVFNDTLGRFDYEQMRTDPDFMRKTAKSLMIDEREIVKVFVDIPAGANGYDADKSRLTLGDDTSDFGKAVEIV DHDELSDAETRAVKA Q4KPG3 ORF 31 Haloarcula hispanica virus SH1 0.014982345999999999 1 LEVO ERLGRLVDVLETKEFGDTTVERSVTQNIDRTRTDSPNNENQPIYFSTGPEAIAVENTEEWERLDFGIVAETVNIRTTDDI DIAFADPNKNGPVIRVREGESPFTIGGDAGIESAFIWLRQAETASNTPGIQIIAF Q4KPF6 VP12 Haloarcula hispanica virus SH1 0.002060531 1 LEVO (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) VP13 Haloarcula hispanica virus SH1 0.006826405999999999 1 LEVO (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) singleParticle particle 15 7.2

20mM Tris-HCl pH 7.2, 1M NaCl, 10 mM MnCl2

C-flat-2/1 COPPER 200 CARBON HOLEY ARRAY 20.0 GLOW DISCHARGE 15 AIR 0.027 ETHANE 100 4 FEI VITROBOT MARK IV FEI POLARA 300 FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 160000.0 37037.0 OTHER NITROGEN GIF Quantum LS 20 GATAN K2 SUMMIT (4k x 4k) COUNTING 4.4 1.0 1 16185

This number of particle was generated by merging the datasets of full particles with and without spikes.

EMDB-1353

C532 BACK PROJECTION 3.8 FSC 0.143 CUT-OFF cisTEM 16185 MAXIMUM LIKELIHOOD RELION 2.1 MAXIMUM LIKELIHOOD RELION 2.1 custom RELION 2.1 custom BACKBONE TRACE Cross-correlation coefficient REAL 144.281000000000006 emd_4633_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 107 147 158 594 238 343 158 147 107 213.3 198.45 144.45 90.0 90.0 90.0 Z Y X -13.619469 26.072016000000001 0.0003920611 0.97344065 1.35 1.35 1.35 AUTHOR ::::EMDATABANK.org::::D_1292100475:::: Sharpened and non-icosahedrally averaged map of VP7 protein emd_4633_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 114 138 146 598 245 355 146 138 114 197.1 186.3 153.90001 90.0 90.0 90.0 Z Y X -12.007503 18.213374999999999 0.00053689897 0.9714486 1.35 1.35 1.35 AUTHOR ::::EMDATABANK.org::::D_1292100475:::: Sharpened and non-icosahedrally averaged map of VP4 protein emd_4633_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 800 800 800 0 0 0 800 800 800 1080.0 1080.0 1080.0 90.0 90.0 90.0 X Y Z -4.7634196 7.4221334 0.0039586117 0.32565737 1.35 1.35 1.35 AUTHOR ::::EMDATABANK.org::::D_1292100475:::: Block-based reconstruction of SH1 capsid, halfmap 2 emd_4633_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 800 800 800 0 0 0 800 800 800 1080.0 1080.0 1080.0 90.0 90.0 90.0 X Y Z -5.226724 7.4847236 0.0043755933 0.3243908 1.35 1.35 1.35 AUTHOR ::::EMDATABANK.org::::D_1292100475:::: Block-based reconstruction of SH1 capsid. halfmap 1