2024-11-06 REL PDBe PDBe PDBe 2019-02-11 2019-03-06 2019-07-10 2024-11-06 Swiss National Science Foundation 310030_153145 Switzerland Swiss National Science Foundation 310030B_173335 Switzerland Swiss National Science Foundation 160805 Switzerland Swiss Nanoscience Institute A13.12 NanoGhip Switzerland Swiss National Science Foundation NCCR TransCure Switzerland Rhodopsin-Gi protein complex Tsai C-J Marino J GPCR and G protein complex, SIGNALING PROTEIN Tsai CJ Marino J Adaixo R Pamula F Muehle J Maeda S Flock T Taylor NM Mohammed I Matile H Dawson RJ Deupi X Stahlberg H Schertler G Cryo-EM structure of the rhodopsin-G alpha i-beta gamma complex reveals binding of the rhodopsin C-terminal tail to the G beta subunit. Elife US 8 2019 31251171 doi:10.7554/eLife.46041 2050-084X 6qno FULLOVERLAP Rhodopsin-Gi complex bound with antibody fragment Fab16 Rhodopsin-Gi complex bound with antibody fragment Fab16 0 1 2 3 4 5 6 0.17 Guanine nucleotide-binding protein alpha subunit 1 1 Homo sapiens Guanine nucleotide-binding protein beta/gamma subunit 1 2 3 Bos taurus antibody FAB fragment Fab16 1 4 5 Mus musculus Rhodopsin 1 6 Bos taurus Guanine nucleotide-binding protein G(i) subunit alpha-1 Homo sapiens 0.043182078 1 Escherichia coli BL21 LEVO MKKHHHHHHHHHHENLYFQGGSMGCTLSAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHE AGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDSARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQA CFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGV TAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEE AAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF P63096 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 Bos taurus retina 0.03741693 1 LEVO MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLI IWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV TDDGMAVATGSWDSFLKIWN P62871 Guanine nucleotide-binding protein G(T) subunit gamma-T1 Bos taurus retina 0.008556917999999998 1 LEVO MPVINIEDLTEKDKLKMEVDQLKKEVTLERMLVSKCCEEFRDYVEERSGEDPLVKGIPEDKNPFKELKGGCVIS P02698 Fab antibody fragment light chain Mus musculus 0.026309550999999997 1 hybrid LEVO MRCLAEFLGLLVLWIPGAIGDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLA SGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCF LNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC Fab antibody fragment heavy chain Mus musculus 0.026558901999999995 1 hybrid LEVO MDSRLNLVFLVLTLKGVQCDVQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYA DTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSAKTTPPSVYPLAPGCGDTTG SSVTLGCLVKGYFPESVTVTWNSGSLSSSVHTFPALLQSGLYTMSSSVTVPSSTWPSQTVTCSVAHPASSTTVDKKLEPS GPISTINPC Rhodopsin Bos taurus retina 0.039040527
mutant N2C/M257Y/D282C
1 Homo sapiens LEVO MCGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLA VADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFT WVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQES ATTQKAEKEVTRMVIIYVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTT LCCGKNPLGDDEASTTVSKTETSQVAPA P02699 RETINAL 0.00028443599999999994 1 RET singleParticle particle 0.2 7.5 20.0 C8H18N2O4S HEPES 150.0 NaCl Sodium choloride
The detergent lauryl-maltose neopentyl glycol (LMNG) was used before the last purification step by gel filtration. In the gel filtration, detergent-free buffer was used.
 COPPER 300 CARBON LACEY GLOW DISCHARGE AIR ETHANE 90 295 FEI VITROBOT MARK IV
The sample was monodisperse.
 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 100.0 2.7 15.0 15.0 25.0 25.0 165000.0 165000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN 70.0 93.0 GIF Quantum LS 20 GATAN K2 SUMMIT (4k x 4k) SUPER-RESOLUTION 7676 7420 1-40 1 3200 10.0 60.0 1
super resolution mode
580000
Cryosparc v1 Ab Initio
 3 C1 FOURIER SPACE 4.38 FSC 0.143 CUT-OFF RELION 2.1 115000 MAXIMUM LIKELIHOOD RELION 2.1 MAXIMUM LIKELIHOOD RELION 2.1 4 RELION 2.1 emd_4598.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 338 338 338 0 0 0 338 338 338 280.54 280.54 280.54 90.0 90.0 90.0 X Y Z -0.050998867 0.12045996 0.00039033938 0.0034118635 0.83000004 0.83000004 0.83000004 0.03 AUTHOR 6FUF PDB experimental model 1GOT PDB experimental model 6QNK PDB experimental model RIGID BODY FIT REAL