2025-05-21 REL RCSB INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY EXPERIMENTAL_SUMMARY em_admin em_software _em_admin.last_update _em_software.name DATA_COLLECTION em_admin em_software _em_admin.last_update _em_software.name RCSB RCSB 2024-07-23 2025-04-23 2025-04-23 2025-05-21 National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) R01GM155152 United States The Ectodomains of SPRING and S1P with the inhibitor PF-429242 Kober DL protease, complex, inhibitor, MEMBRANE PROTEIN, MEMBRANE PROTEIN-INHIBITOR complex Bullington AV Micallo I Bajaj B Kumar P Schlamowitz N Silva A Hendrix S Zelcer N Kober DL Structural basis for substrate selectivity by site-one protease revealed by studies with a small-molecule inhibitor. Proc.Natl.Acad.Sci.USA US 122 e2426931122 e2426931122 2025 40299693 doi:10.1073/pnas.2426931122 1091-6490 0040 PNASA6 9csd FULLOVERLAP Complex of the ectodomains of S1P and SPRING in the presence of the small molecule PF-429242 Complex of the ectodomains of S1P and SPRING in the presence of the small molecule PF-429242 0 1 2 Homo sapiens 0.12 Membrane-bound transcription factor site-1 protease Homo sapiens 0.11504820299999999
Construct contains 1-998 of human site one protease followed by a 3xFLAG affinity tag
1 Homo sapiens LEVO MKLVNIWLLLLVVLLCGKKHLGDRLEKKSFEKAPCPGCSHLTLKVEFSSTVVEYEYIVAFNGYFTAKARNSFISSALKSS EVDNWRIIPRNNPSSDYPSDFEVIQIKEKQKAGLLTLEDHPNIKRVTPQRKVFRSLKYAESDPTVPCNETRWSQKWQSSR PLRRASLSLGSGFWHATGRHSSRRLLRAIPRQVAQTLQADVLWQMGYTGANVRVAVFDTGLSEKHPHFKNVKERTNWTNE RTLDDGLGHGTFVAGVIASMRECQGFAPDAELHIFRVFTNNQVSYTSWFLDAFNYAILKKIDVLNLSIGGPDFMDHPFVD KVWELTANNVIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDFEDNIARFSSRGMTTWELPGGYGRMKPDIVTYGAGVRG SGVKGGCRALSGTSVASPVVAGAVTLLVSTVQKRELVNPASMKQALIASARRLPGVNMFEQGHGKLDLLRAYQILNSYKP QASLSPSYIDLTECPYMWPYCSQPIYYGGMPTVVNVTILNGMGVTGRIVDKPDWQPYLPQNGDNIEVAFSYSSVLWPWSG YLAISISVTKKAASWEGIAQGHVMITVASPAETESKNGAEQTSTVKLPIKVKIIPTPPRSKRVLWDQYHNLRYPPGYFPR DNLRMKNDPLDWNGDHIHTNFRDMYQHLRSMGYFVEVLGAPFTCFDASQYGTLLMVDSEEEYFPEEIAKLRRDVDNGLSL VIFSDWYNTSVMRKVKFYDENTRQWWMPDTGGANIPALNELLSVWNMGFSDGLYEGEFTLANHDMYYASGCSIAKFPEDG VVITQTFKDQGLEVLKQETAVVENVPILGLYQIPAEGGGRIVLYGDSNCLDDSHRQKDCFWLLDALLQYTSYGVTPPSLS HSGNRQRPPSGAGSVTPERMEGNHLHRYSKVLEAHLGDPKPRPLPACPRLSWAKPQPLNETAPSNLWKHQKLLSIDLDKV VLPNFRSNRPQVRPLSPGESGAWDIPGGIMPGRYNQEVDYKDDDDKGSDYKDDDDKGSDYKDDDDK Q14703 SREBP regulating gene protein Homo sapiens 0.023200291
Construct contains an IgK leader peptide followed by human SPRING residues 35-205 followed by a 10-His tag
1 Homo sapiens LEVO METDTLLLWVLLLWVPGSTGDKQEERAVRDRNLLQVHDHNQPIPWKVQFNLGNSSRPSNQCRNSIQGKHLITDELGYVCE RKDLLVNGCCNVNVPSTKQYCCDGCWPNGCCSAYEYCVSCCLQPNKQLLLERFLNRAAVAFQNLFMAVEDHFELCLAKCR TSSQSVQHENTYRDPIAKYCYGESPPELFPAHHHHHHHHHH Q9H741 2-acetamido-2-deoxy-beta-D-glucopyranose 0.000221208 1 NAG 4-[(diethylamino)methyl]-N-[2-(2-methoxyphenyl)ethyl]-N-[(3R)-pyrrolidin-3-yl]benzamide 0.000409564 1 A1AZU CALCIUM ION 4.0078e-05 1 CA water 1.8015e-05 42 HOH singleParticle particle 0.5 7.5 Quantifoil R1.2/1.3 GOLD 400 CARBON GLOW DISCHARGE AIR 0.03 ETHANE TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 1.8 2.0 FEI FALCON III (4k x 4k) 64.0 1 PHASE FLIPPING AND AMPLITUDE CORRECTION 2.4 FSC 0.143 CUT-OFF cryoSPARC 4.4 122723 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD cryoSPARC 4.4 emd_45892.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 221.4 221.4 221.4 90.0 90.0 90.0 X Y Z -0.10373428 0.20659499 -0.000083232226 0.0040134257 0.738 0.738 0.738 0.03 AUTHOR map of SPRING/S1P/PF-429242 emd_45892_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 221.4 221.4 221.4 90.0 90.0 90.0 X Y Z -0.039987836 2.2019246 0.0011497599 0.023229182 0.738 0.738 0.738 AUTHOR deepemhancer map of SPRING/S1P/PF-429242 for model building and illustrations emd_45892_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 221.4 221.4 221.4 90.0 90.0 90.0 X Y Z -0.11382286 0.20247863 0.0000014224339 0.008643135 0.738 0.738 0.738 AUTHOR half map B for S1P/SPRING/PF-429242 emd_45892_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 221.4 221.4 221.4 90.0 90.0 90.0 X Y Z -0.11978065 0.22640146 0.0000012828846 0.00852855 0.738 0.738 0.738 AUTHOR half map A for S1P/SPRING/PF-429242